BLASTX nr result
ID: Cinnamomum24_contig00010284
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum24_contig00010284
(3986 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010275353.1| PREDICTED: probable RNA-dependent RNA polyme... 1544 0.0
ref|XP_012072321.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1483 0.0
ref|XP_012072320.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1483 0.0
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 1481 0.0
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 1480 0.0
ref|XP_010917515.1| PREDICTED: probable RNA-dependent RNA polyme... 1479 0.0
ref|XP_011024314.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1476 0.0
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1475 0.0
ref|XP_011024307.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1475 0.0
ref|XP_008812977.1| PREDICTED: probable RNA-dependent RNA polyme... 1471 0.0
ref|XP_012072326.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1469 0.0
ref|XP_012072327.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1467 0.0
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1462 0.0
ref|XP_002284914.1| PREDICTED: probable RNA-dependent RNA polyme... 1458 0.0
gb|KHG26498.1| RNA-dependent RNA polymerase 1 -like protein [Gos... 1457 0.0
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1455 0.0
ref|XP_012463738.1| PREDICTED: RNA-dependent RNA polymerase 1 [G... 1451 0.0
ref|XP_002281315.1| PREDICTED: probable RNA-dependent RNA polyme... 1431 0.0
ref|XP_011075687.1| PREDICTED: probable RNA-dependent RNA polyme... 1428 0.0
ref|XP_010093320.1| RNA-dependent RNA polymerase 1 [Morus notabi... 1425 0.0
>ref|XP_010275353.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
gi|719962527|ref|XP_010275424.1| PREDICTED: probable
RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
gi|719962530|ref|XP_010275500.1| PREDICTED: probable
RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
gi|719962533|ref|XP_010275583.1| PREDICTED: probable
RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
gi|719962536|ref|XP_010275643.1| PREDICTED: probable
RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
gi|719962539|ref|XP_010275710.1| PREDICTED: probable
RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
Length = 1136
Score = 1544 bits (3997), Expect = 0.0
Identities = 777/1138 (68%), Positives = 913/1138 (80%), Gaps = 6/1138 (0%)
Frame = -2
Query: 3637 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3458
+TI + GFPA V+A+ VK LE + G+ GTV ALKVR KN G AFVIVQFTTS A
Sbjct: 3 KTIHLSGFPANVTAEAVKELLERYTGD-GTVYALKVRHHKNKGHARFAFVIVQFTTSGSA 61
Query: 3457 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3278
+ ITS ++L YYG YL V+D ERDI+ KPR +LL+LEHT LH GCQVS +KFS LW
Sbjct: 62 DVITSLVNRRL-YYGTHYLKVRDVERDIVAKPRMSLLSLEHTTLHFGCQVSPEKFSVLWK 120
Query: 3277 AADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3098
ADV V F FGLR+L FFLS ++YKL L YE+IWQIQLR PR ++KKFLLIQ+ PR
Sbjct: 121 GADVAVRFEFGLRRLHFFLSQFPIDYKLGLSYENIWQIQLRHPRGQNKKFLLIQMFGVPR 180
Query: 3097 IYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2918
I+KK S +N+F+ P LNYFR+ DDQW R DFTPLCCIGQSS LCL++PY LP+I
Sbjct: 181 IFKKVKISLENMFEDPILNYFREP-DDQWDRTTDFTPLCCIGQSSALCLELPYSYVLPNI 239
Query: 2917 HENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2738
E F YYKE+EG F+LE G++F R L LVPIV P Q +PY+ILFKV SLVQNG + GP
Sbjct: 240 REYFAYYKEDEGPFVLESGATFSRSLSLVPIVGPSQGSDIPYEILFKVCSLVQNGCLSGP 299
Query: 2737 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2558
TLD FF LV+P I DYIE+ALE L +LKE C+EP WL +QY Y R P+L +I
Sbjct: 300 TLDAAFFRLVDPNFISIDYIENALEKLYHLKECCYEPVNWLTKQYRAYCTLKRPPKLPSI 359
Query: 2557 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2378
SLD GLVY+ R+Q+TP K+YFCGPEV VSNRVLRE+S I+NFIRISFVDE+ DK+ S D
Sbjct: 360 SLDDGLVYVRRIQITPCKVYFCGPEVIVSNRVLREYSRYIDNFIRISFVDEDLDKIHSTD 419
Query: 2377 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2198
+ PR ++ + HT IY RILSTL+ GIVIG+KKF+FLAFSSSQLR+NSAWMFAS + T
Sbjct: 420 ISPRTSFANEKGHTEIYDRILSTLKNGIVIGDKKFDFLAFSSSQLRDNSAWMFASSNGYT 479
Query: 2197 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIETESR--KYNFS 2024
AA IR+WMGDFS+I+NVAKYAARLGQSF SS+ETL V +HE EII DI+ E R +Y FS
Sbjct: 480 AASIRQWMGDFSKIRNVAKYAARLGQSFSSSRETLNVYEHETEIIDDIKVEWRGIEYIFS 539
Query: 2023 DGIGKISANFARRVALKCDLS-STPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1847
DGIGKISA+FA++VA KC S PSAFQIRYGGYKGVVA+DP S KLSLR+SM KY+S
Sbjct: 540 DGIGKISADFAKQVAKKCGFKGSFPSAFQIRYGGYKGVVAVDPTSTKKLSLRRSMSKYES 599
Query: 1846 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQEA 1667
N KLDVLSWSKYQPC+LNRQ+ITLLSTLGV+D FE+KQ+EA+DQLD +LTDS++AQEA
Sbjct: 600 RNTKLDVLSWSKYQPCFLNRQIITLLSTLGVRDSIFEKKQKEAMDQLDAILTDSLKAQEA 659
Query: 1666 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1487
LE+MSPGEN +LKEMLLCGY+P+AEPFLSM LQTFRASKL ELRTKTRIF+P GRS++G
Sbjct: 660 LEIMSPGENTNILKEMLLCGYEPNAEPFLSMMLQTFRASKLLELRTKTRIFVPNGRSLLG 719
Query: 1486 CLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLV-GKVFVAKNPCLHPG 1310
CLDETRTL+YG+VFV +S GR+QF + L +F GN ++ +V GK+ VAKNPCLHPG
Sbjct: 720 CLDETRTLKYGEVFVQVSSIGRRQFHESSLFVFSGNEPEQQKFIVEGKIIVAKNPCLHPG 779
Query: 1309 DVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPP 1130
DVR+LQAVNVPALHHMVDCV+FPQ+G+RPHPNECSGSDLDGD+YFV WDPDLIP RQ+ P
Sbjct: 780 DVRLLQAVNVPALHHMVDCVVFPQEGKRPHPNECSGSDLDGDVYFVCWDPDLIPPRQIQP 839
Query: 1129 MEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELA 950
MEY+P + LDHDV IEE+EEYFTNY+VN+SLG+IANAHT FADKEP+ AESD+C +LA
Sbjct: 840 MEYLPEPSVNLDHDVTIEEIEEYFTNYIVNESLGIIANAHTAFADKEPKKAESDACLQLA 899
Query: 949 KLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTG 770
KLFSIAVDFPKTGVPAEIP HL+VKE PDFMEK DKP Y S+RVIGKLFRA+KD+AP T
Sbjct: 900 KLFSIAVDFPKTGVPAEIPQHLYVKEYPDFMEKLDKPTYVSERVIGKLFRAVKDIAPQTW 959
Query: 769 HIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGS 590
I+SFT+EVAR+SYDPDMEVDGFEDY+ DA ++K +YD KLGNLMDYYGIKTE E+LSG+
Sbjct: 960 SIRSFTQEVARRSYDPDMEVDGFEDYLSDAYYYKGEYDSKLGNLMDYYGIKTEAEILSGN 1019
Query: 589 ILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYH 410
I+K+SKSF+K+ DAEAISLAVRSL+KE R WFNEK S P+ DD YAKASAWYHVTYH
Sbjct: 1020 IMKLSKSFTKKRDAEAISLAVRSLRKEARAWFNEK-SGPGPEA-DDVYAKASAWYHVTYH 1077
Query: 409 PNYWGIYNEGMKRAHFLSFPWIVYDKLIHI--XXXXXXXXXXXXXASLQYSFGRSLRL 242
P+YWG YNEG+KR HFLSFPW VYDKLIHI +SL F RSLRL
Sbjct: 1078 PDYWGCYNEGLKRDHFLSFPWCVYDKLIHIKREKASIRRIRIIDESSLGLQFRRSLRL 1135
>ref|XP_012072321.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
curcas] gi|802596568|ref|XP_012072322.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
curcas] gi|802596570|ref|XP_012072324.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
curcas]
Length = 1127
Score = 1483 bits (3840), Expect = 0.0
Identities = 739/1134 (65%), Positives = 883/1134 (77%), Gaps = 3/1134 (0%)
Frame = -2
Query: 3637 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3458
+TI++ GFP+ V+ D+VK FLE+H GE GTV A+K+R KN G R + IVQF T+R A
Sbjct: 3 KTIQVYGFPSHVTVDEVKKFLESHSGE-GTVFAMKIRETKNRGRRK--YAIVQFQTARDA 59
Query: 3457 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3278
E I S ++L Y G +YL + + DI+PKPR+ L +++H LH GCQ+S +KFS LW
Sbjct: 60 ELIISLTNKRLRY-GTSYLKARPLDNDIVPKPRTFLHSMDHITLHFGCQISKEKFSVLWT 118
Query: 3277 AADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3098
+V VNFGFG+RKL FFLSH + YKLEL YE++WQ++L CPR RS K+LLIQ+ APR
Sbjct: 119 GTNVSVNFGFGMRKLQFFLSHGQMGYKLELSYENVWQMELHCPRGRSVKYLLIQLYGAPR 178
Query: 3097 IYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2918
I++K ++ N+F+ P N +DT D+QW+R +DFTP C IG SS LCL+ P +P
Sbjct: 179 IFEKEIATF-NVFEIPLFNDLKDTPDEQWVRTIDFTPFCLIGHSSGLCLEFPSSINVPKF 237
Query: 2917 HENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2738
ENF YYKE+EG F+LE G++F R LDLVPIV P + LP++ILF+VN LVQNG + G
Sbjct: 238 QENFSYYKESEGIFVLENGNAFSRNLDLVPIVGPPSGVDLPFEILFRVNLLVQNGCLPGS 297
Query: 2737 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2558
LD F+ LV+P +++ D IEHAL+ L +LKE C++P+RWL QY KY S PR +I
Sbjct: 298 ALDSSFYELVDPSTMNIDCIEHALKKLFHLKECCYDPSRWLDEQYRKYLKSKCHPRSPSI 357
Query: 2557 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2378
SL SGLVY+ RVQ+TP K+YFCGPEVNVSNRV+R +S DI NF+R+SFVDEE +K+ S D
Sbjct: 358 SLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRHYSKDINNFLRVSFVDEELEKIYSTD 417
Query: 2377 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2198
L PRA S +G++ T IYKRILSTL+ GIVIG K+FEFLAFSSSQLRENS WMFASR LT
Sbjct: 418 LCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFLAFSSSQLRENSCWMFASRDGLT 477
Query: 2197 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIETES--RKYNFS 2024
AADIR WMG+F +I+NVAKYAARLGQSFGSS ETL+V ++EIEI+PD+E E KY FS
Sbjct: 478 AADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVSRNEIEILPDVEVERGRTKYLFS 537
Query: 2023 DGIGKISANFARRVALKCDLSST-PSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1847
DGIGKISA FARRVALKC PSAFQIRYGGYKGVVA+DP S KLSLR+SMCKY+S
Sbjct: 538 DGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDPTSSKKLSLRESMCKYES 597
Query: 1846 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQEA 1667
EN KLDVL +SKYQPC+LNRQ+ITLLSTLGV DH FE+KQ+EAVDQLD +LT+S+RAQEA
Sbjct: 598 ENTKLDVLGYSKYQPCFLNRQMITLLSTLGVADHIFEKKQREAVDQLDAILTNSLRAQEA 657
Query: 1666 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1487
L++MSPGE +L EMLLCGY+PDAEPFLSM LQ FRASKL +LRTK+RIF+P GRSMMG
Sbjct: 658 LDLMSPGETTNILNEMLLCGYQPDAEPFLSMMLQMFRASKLLDLRTKSRIFVPNGRSMMG 717
Query: 1486 CLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1307
CLDETR LEYGQVFV S + KQ +D M G V+ G V VAKNPCLHPGD
Sbjct: 718 CLDETRNLEYGQVFVQFSGSKHKQVYDSST-MVGGIGSGNGFVIEGMVIVAKNPCLHPGD 776
Query: 1306 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1127
+RVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WDPDLIP +Q+PPM
Sbjct: 777 IRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPRQQLPPM 836
Query: 1126 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELAK 947
+Y P + LDHDV I+EV EYFTNY++NDSLG+I+NAHTVFAD+EP A S C ELA
Sbjct: 837 DYTPQPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFADREPEKAMSKPCLELAS 896
Query: 946 LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 767
FSIAVDFPKTGVPAEI SHL VKE PDFMEKPDKP YES+ VIGKLFRA++D+AP T
Sbjct: 897 KFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNVIGKLFRAVRDIAPHTSS 956
Query: 766 IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 587
I+SFT EVAR+ YDPDMEVDGFEDYI+DA ++K YD KLGN MDYYGI+TE E+L GSI
Sbjct: 957 IKSFTLEVARQCYDPDMEVDGFEDYIDDAFYYKTNYDYKLGNHMDYYGIRTEAEILGGSI 1016
Query: 586 LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 407
+KMSK+F+K+ DAEAI LAVRSL+KE R WF E+GS D + +DD YAKASAW++VTYHP
Sbjct: 1017 MKMSKAFTKKRDAEAIGLAVRSLRKEARSWFKERGSGLDSE-EDDVYAKASAWHYVTYHP 1075
Query: 406 NYWGIYNEGMKRAHFLSFPWIVYDKLIHIXXXXXXXXXXXXXASLQYSFGRSLR 245
+YWG YNEGM R HFLSFPW VYDKLI I +SL+ FG LR
Sbjct: 1076 SYWGRYNEGMNRDHFLSFPWCVYDKLIQI----KRKRRCQHLSSLERQFGLRLR 1125
>ref|XP_012072320.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha
curcas]
Length = 1144
Score = 1483 bits (3840), Expect = 0.0
Identities = 739/1134 (65%), Positives = 883/1134 (77%), Gaps = 3/1134 (0%)
Frame = -2
Query: 3637 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3458
+TI++ GFP+ V+ D+VK FLE+H GE GTV A+K+R KN G R + IVQF T+R A
Sbjct: 20 KTIQVYGFPSHVTVDEVKKFLESHSGE-GTVFAMKIRETKNRGRRK--YAIVQFQTARDA 76
Query: 3457 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3278
E I S ++L Y G +YL + + DI+PKPR+ L +++H LH GCQ+S +KFS LW
Sbjct: 77 ELIISLTNKRLRY-GTSYLKARPLDNDIVPKPRTFLHSMDHITLHFGCQISKEKFSVLWT 135
Query: 3277 AADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3098
+V VNFGFG+RKL FFLSH + YKLEL YE++WQ++L CPR RS K+LLIQ+ APR
Sbjct: 136 GTNVSVNFGFGMRKLQFFLSHGQMGYKLELSYENVWQMELHCPRGRSVKYLLIQLYGAPR 195
Query: 3097 IYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2918
I++K ++ N+F+ P N +DT D+QW+R +DFTP C IG SS LCL+ P +P
Sbjct: 196 IFEKEIATF-NVFEIPLFNDLKDTPDEQWVRTIDFTPFCLIGHSSGLCLEFPSSINVPKF 254
Query: 2917 HENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2738
ENF YYKE+EG F+LE G++F R LDLVPIV P + LP++ILF+VN LVQNG + G
Sbjct: 255 QENFSYYKESEGIFVLENGNAFSRNLDLVPIVGPPSGVDLPFEILFRVNLLVQNGCLPGS 314
Query: 2737 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2558
LD F+ LV+P +++ D IEHAL+ L +LKE C++P+RWL QY KY S PR +I
Sbjct: 315 ALDSSFYELVDPSTMNIDCIEHALKKLFHLKECCYDPSRWLDEQYRKYLKSKCHPRSPSI 374
Query: 2557 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2378
SL SGLVY+ RVQ+TP K+YFCGPEVNVSNRV+R +S DI NF+R+SFVDEE +K+ S D
Sbjct: 375 SLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRHYSKDINNFLRVSFVDEELEKIYSTD 434
Query: 2377 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2198
L PRA S +G++ T IYKRILSTL+ GIVIG K+FEFLAFSSSQLRENS WMFASR LT
Sbjct: 435 LCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFLAFSSSQLRENSCWMFASRDGLT 494
Query: 2197 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIETES--RKYNFS 2024
AADIR WMG+F +I+NVAKYAARLGQSFGSS ETL+V ++EIEI+PD+E E KY FS
Sbjct: 495 AADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVSRNEIEILPDVEVERGRTKYLFS 554
Query: 2023 DGIGKISANFARRVALKCDLSST-PSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1847
DGIGKISA FARRVALKC PSAFQIRYGGYKGVVA+DP S KLSLR+SMCKY+S
Sbjct: 555 DGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDPTSSKKLSLRESMCKYES 614
Query: 1846 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQEA 1667
EN KLDVL +SKYQPC+LNRQ+ITLLSTLGV DH FE+KQ+EAVDQLD +LT+S+RAQEA
Sbjct: 615 ENTKLDVLGYSKYQPCFLNRQMITLLSTLGVADHIFEKKQREAVDQLDAILTNSLRAQEA 674
Query: 1666 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1487
L++MSPGE +L EMLLCGY+PDAEPFLSM LQ FRASKL +LRTK+RIF+P GRSMMG
Sbjct: 675 LDLMSPGETTNILNEMLLCGYQPDAEPFLSMMLQMFRASKLLDLRTKSRIFVPNGRSMMG 734
Query: 1486 CLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1307
CLDETR LEYGQVFV S + KQ +D M G V+ G V VAKNPCLHPGD
Sbjct: 735 CLDETRNLEYGQVFVQFSGSKHKQVYDSST-MVGGIGSGNGFVIEGMVIVAKNPCLHPGD 793
Query: 1306 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1127
+RVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WDPDLIP +Q+PPM
Sbjct: 794 IRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPRQQLPPM 853
Query: 1126 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELAK 947
+Y P + LDHDV I+EV EYFTNY++NDSLG+I+NAHTVFAD+EP A S C ELA
Sbjct: 854 DYTPQPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFADREPEKAMSKPCLELAS 913
Query: 946 LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 767
FSIAVDFPKTGVPAEI SHL VKE PDFMEKPDKP YES+ VIGKLFRA++D+AP T
Sbjct: 914 KFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNVIGKLFRAVRDIAPHTSS 973
Query: 766 IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 587
I+SFT EVAR+ YDPDMEVDGFEDYI+DA ++K YD KLGN MDYYGI+TE E+L GSI
Sbjct: 974 IKSFTLEVARQCYDPDMEVDGFEDYIDDAFYYKTNYDYKLGNHMDYYGIRTEAEILGGSI 1033
Query: 586 LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 407
+KMSK+F+K+ DAEAI LAVRSL+KE R WF E+GS D + +DD YAKASAW++VTYHP
Sbjct: 1034 MKMSKAFTKKRDAEAIGLAVRSLRKEARSWFKERGSGLDSE-EDDVYAKASAWHYVTYHP 1092
Query: 406 NYWGIYNEGMKRAHFLSFPWIVYDKLIHIXXXXXXXXXXXXXASLQYSFGRSLR 245
+YWG YNEGM R HFLSFPW VYDKLI I +SL+ FG LR
Sbjct: 1093 SYWGRYNEGMNRDHFLSFPWCVYDKLIQI----KRKRRCQHLSSLERQFGLRLR 1142
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 1481 bits (3834), Expect = 0.0
Identities = 738/1110 (66%), Positives = 872/1110 (78%), Gaps = 3/1110 (0%)
Frame = -2
Query: 3640 SRTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRF 3461
S+T+K+ GFP++ +A V+ FLE+H G GTV ALK+R + G +R + IVQFTT+R
Sbjct: 2 SKTVKVSGFPSSTTAGAVQVFLESHTGG-GTVEALKIREIRTGG--ARKYAIVQFTTTRA 58
Query: 3460 AEEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLW 3281
AE+I S A +L +YG +YL + +RDIIP+PRS L +E LH G Q S +KFS +W
Sbjct: 59 AEQIISLANPRL-WYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVW 117
Query: 3280 NAADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAP 3101
+ +V VNFG G+RKL FFLSH+ EYKL L +E+IWQI+L PR ++ K+LLIQ+ AP
Sbjct: 118 SGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAP 177
Query: 3100 RIYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPD 2921
RIY++ PS N+F+ P LNYFRD D+QW+R DFTP C IG SS+LCL++P H +LP+
Sbjct: 178 RIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPN 237
Query: 2920 IHENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMG 2741
+ENF YYKENEG F+LE G +F R DLVPIV P + LPY ILF+VN LVQNG + G
Sbjct: 238 FNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAG 297
Query: 2740 PTLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLST 2561
LDD F+ LV+P + IE+ALE L +LKE C+EP++W QY KY S PR
Sbjct: 298 SMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPV 357
Query: 2560 ISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSM 2381
+SLD+GLVY+++VQ+TP K++FCGPEVNVSNRVLR++ +DI+NF+R+SFVDEE +K+ S
Sbjct: 358 LSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHST 417
Query: 2380 DLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSEL 2201
D+ PR S + + T IY RILSTL+ GIVIG+KKFEFLAFSSSQLRENS WMFASR L
Sbjct: 418 DVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477
Query: 2200 TAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIETE--SRKYNF 2027
TAADIR WMG F +I+NVA+YAARLGQSFGSS ETL+V HEIEIIPDIE +Y F
Sbjct: 478 TAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLF 537
Query: 2026 SDGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYK 1850
SDGIGKISA FAR+VA+KC TPSAFQIRY GYKGVVA+DP S KLSLR+SM KY+
Sbjct: 538 SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYE 597
Query: 1849 SENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQE 1670
SEN KLDVL+ SKYQPC+LNRQLITLLSTLGV DH FERKQ+EAVDQLD MLTD +RAQE
Sbjct: 598 SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQE 657
Query: 1669 ALEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMM 1490
ALE+MSPGEN +LKEMLLCGY+PDAEPFLSM LQTFRASKL ELRTKTRIFIP GRSMM
Sbjct: 658 ALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 717
Query: 1489 GCLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPG 1310
GCLDETRTLE+GQVFV S + + +D DMF + ++ G V VAKNPCLHPG
Sbjct: 718 GCLDETRTLEHGQVFVKFSGSRFRNLYDSS-DMFSERGRGQCYLIKGSVVVAKNPCLHPG 776
Query: 1309 DVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPP 1130
D+R+L+AV+VPALHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WDP+LIPS+Q+ P
Sbjct: 777 DLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISP 836
Query: 1129 MEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELA 950
M+Y P LDHDV IEEVEEYFTNY+VNDSLGVIANAHT ADKE A S+ C ELA
Sbjct: 837 MDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELA 896
Query: 949 KLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTG 770
+ FSIAVDFPKTGVPAEIPS+L +E PDFMEKPDKP+YES+ VIGKLFR +KD+AP T
Sbjct: 897 RKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTS 956
Query: 769 HIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGS 590
I+SFT +VAR+ YDPDMEVDGFEDYI+DA ++K YD KLGNLM+YYGIKTE E+LSGS
Sbjct: 957 SIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGS 1016
Query: 589 ILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYH 410
+KMSKSF+K+ DAEAI +AVRSLKKE R WFNEKGS D DD AKASAWYHVTYH
Sbjct: 1017 FMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQA-DDVDAKASAWYHVTYH 1075
Query: 409 PNYWGIYNEGMKRAHFLSFPWIVYDKLIHI 320
NYWG YNEGM R HFLSFPW VYDKLI I
Sbjct: 1076 HNYWGCYNEGMNRDHFLSFPWCVYDKLIQI 1105
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 1480 bits (3831), Expect = 0.0
Identities = 744/1135 (65%), Positives = 878/1135 (77%), Gaps = 3/1135 (0%)
Frame = -2
Query: 3637 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3458
+TI++ FP+ V A++VK FLE + G+E TV ALK+R KN G RA+ IVQFT S A
Sbjct: 3 KTIQVSRFPSNVHAEEVKTFLELYTGKE-TVYALKIRQQKNGG---RAYAIVQFTKSTDA 58
Query: 3457 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3278
E I Q+L YYG +YL ++ E DI+PKPR+ L +E LH GCQVS++KF LW
Sbjct: 59 ELIIRLTNQRL-YYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE 117
Query: 3277 AADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3098
DV VNFG G+RKL F LSHH +EY+L+LFYE+IWQI+L PR ++ K+LLIQ+ APR
Sbjct: 118 EVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPR 177
Query: 3097 IYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2918
IY+K S +F++P LNYF D DDQW+R DFT CIGQSS LCL++PY+ +LP+
Sbjct: 178 IYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNF 237
Query: 2917 HENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2738
ENF YYKE+EG+F+LE GSS+ R L+LVPIV P I LPY+ILFK+N LVQNG I GP
Sbjct: 238 RENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGP 297
Query: 2737 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2558
LD F+ LVNPC ID YI+HALE L LKE CFEP++WL QY Y S + P I
Sbjct: 298 ALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVI 357
Query: 2557 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2378
SLD GLV + RVQ+TP+++YFCGPE+NVSNRVLR F DDI+NF+RI+FVDEE +K+ S D
Sbjct: 358 SLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTD 417
Query: 2377 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2198
L+ R R ++ IY RILSTL+ GIVIG+K+FEFLAFSSSQLRENSAWMFASR LT
Sbjct: 418 LLTRNRITE------IYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLT 471
Query: 2197 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIET--ESRKYNFS 2024
AADIR WMG+FS+I+NVAKYAARLGQSF SS ETL+V K EIEII D+E + Y FS
Sbjct: 472 AADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFS 531
Query: 2023 DGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1847
DGIGKISA FA++VA KC L+ TPSAFQIR GG+KGVVA+DP S KLSLR SM KY+S
Sbjct: 532 DGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYES 591
Query: 1846 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQEA 1667
EN KLDVL+WSKYQPC+LNRQLITLLSTLGV DHAFE KQ+E VDQL+ +LTD ++AQEA
Sbjct: 592 ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEA 651
Query: 1666 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1487
LE+MSPGEN +LKEMLLCGY+PDAEPFLSM LQTFRASKL ELRTK+RIF+ GRSMMG
Sbjct: 652 LELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMG 711
Query: 1486 CLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1307
CLDETRTL+YGQVFV +S G+R ++ ++ GKV VAKNPCLHPGD
Sbjct: 712 CLDETRTLDYGQVFVQVS----------------GSRSEQRFIVQGKVVVAKNPCLHPGD 755
Query: 1306 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1127
VRVL AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WDP+LIPS+Q+PPM
Sbjct: 756 VRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPM 815
Query: 1126 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELAK 947
+Y PA + L+H+V IEEVEEYFTNY+VNDSLG+IANAHTVFAD+EPR A S C LAK
Sbjct: 816 DYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAK 875
Query: 946 LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 767
LFSIAVDFPKTGVPAEIP L VKE PDFMEKPDKP Y+S VIGKLFR +KD+AP
Sbjct: 876 LFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECF 935
Query: 766 IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 587
I+S TRE + YDPDMEVDG+EDY++DA + K YD KLGNLM+YYGIKTE E+LSG I
Sbjct: 936 IRSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGI 995
Query: 586 LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 407
+KMS+SF+K+ DAEAI +AVRSL+KE R WFNEKG+ D + DD YAKASAWYHVTYHP
Sbjct: 996 MKMSRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEA-DDLYAKASAWYHVTYHP 1054
Query: 406 NYWGIYNEGMKRAHFLSFPWIVYDKLIHIXXXXXXXXXXXXXASLQYSFGRSLRL 242
+YWG+YNEGM R HFLSFPW VYDKLI + +SL+ F R LRL
Sbjct: 1055 SYWGLYNEGMNRNHFLSFPWCVYDKLI-LIKKKVTSRRNSRLSSLESLFARGLRL 1108
>ref|XP_010917515.1| PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X1 [Elaeis
guineensis] gi|743774329|ref|XP_010917516.1| PREDICTED:
probable RNA-dependent RNA polymerase 1 isoform X1
[Elaeis guineensis]
Length = 1129
Score = 1479 bits (3830), Expect = 0.0
Identities = 750/1136 (66%), Positives = 887/1136 (78%), Gaps = 3/1136 (0%)
Frame = -2
Query: 3640 SRTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRF 3461
S+T I GFP T +A VK FLE H GE GT+ ALK R PK V +SRA+ IVQFTT+R
Sbjct: 3 SKTTNIHGFPTTATAPSVKAFLEVHTGE-GTIFALKFRLPKYVTAKSRAYAIVQFTTNRH 61
Query: 3460 AEEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLW 3281
AE I A + L++Y L V+D ERDI+PKPR++L LE+ LH G VS +KFS LW
Sbjct: 62 AESI---AHKHLVWYDGFVLKVRDVERDIVPKPRTSLFILENATLHFGSPVSQNKFSVLW 118
Query: 3280 NAADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAP 3101
+A DV+VNFGF LRK+ FFLS G YK EL YESIW+IQL + +FLLIQV AAP
Sbjct: 119 SAMDVKVNFGFNLRKIYFFLSRGGHSYKFELAYESIWEIQLHRSSTQHLQFLLIQVVAAP 178
Query: 3100 RIYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPD 2921
+IY+ + + + P NYF+D DDQW+R DF+PLC IGQSS LCLQ+ Y LP+
Sbjct: 179 KIYELFPRNSGLLLEDPIYNYFKDPPDDQWVRTTDFSPLCSIGQSSALCLQLSYDCDLPN 238
Query: 2920 IHENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMG 2741
I + F++YKE+EG F LE G S+ LDLVPIVEP RI +PYKILFK+N +VQNG + G
Sbjct: 239 IRDYFVFYKESEGHFDLERGISYSCSLDLVPIVEPRPRIEVPYKILFKINHMVQNGTLFG 298
Query: 2740 PTLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLST 2561
PTLD++FF LV+P + DYIE A+E + K + F PA WL +Y+K+ S R P+ +
Sbjct: 299 PTLDEKFFRLVSPQYVRIDYIECAIEEMYFSKSSFFNPANWLTEKYSKFKRSTRLPKSPS 358
Query: 2560 ISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSM 2381
ISLDSGLVY++RVQVTP+K+YF GPEVNVSNRVLR FS+DIENFIR+SFVDE+W+KM S
Sbjct: 359 ISLDSGLVYVYRVQVTPSKVYFYGPEVNVSNRVLRHFSEDIENFIRVSFVDEDWEKMHST 418
Query: 2380 DLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSEL 2201
DL R+ S+ EKHT +Y+R LS LR GI IG K F+FLAFSSSQLRENS+WMFAS L
Sbjct: 419 DLSSRSGSAGNEKHTALYRRTLSVLRNGITIGGKNFKFLAFSSSQLRENSSWMFASNGRL 478
Query: 2200 TAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIETESRKYNFSD 2021
TAA IR+WMGDF EI+NVAKYAARLGQSF SS ETLTV KH+++ IPD+ KY FSD
Sbjct: 479 TAAAIRKWMGDFHEIRNVAKYAARLGQSFSSSTETLTVDKHDVDDIPDV--RDGKYVFSD 536
Query: 2020 GIGKISANFARRVALKCDL-SSTPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKSE 1844
GIGKISA F+RRVA+KC L SSTPSAFQIRYGGYKGVVA+DP S KLSLR+SM KYKS+
Sbjct: 537 GIGKISAEFSRRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSSKKLSLRESMRKYKSD 596
Query: 1843 NMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQEAL 1664
N KLDVL++SKYQPC+LNRQLITLLSTLGV D FE KQ+EAV++LD MLTD RA EA+
Sbjct: 597 NTKLDVLAYSKYQPCFLNRQLITLLSTLGVGDWIFEMKQEEAVNELDKMLTDPDRAWEAI 656
Query: 1663 EMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMGC 1484
E+MSPGE VLKE+LLCGYKPD+EPF+SM LQTFRA++L EL+ K+RIFI KGR+MMGC
Sbjct: 657 ELMSPGETTSVLKELLLCGYKPDSEPFISMLLQTFRAARLLELKNKSRIFIQKGRAMMGC 716
Query: 1483 LDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLD-ESVVLVGKVFVAKNPCLHPGD 1307
LDETRTLEYGQVFV +S GR QF ++GL M+ G+ D + VL GKV +AKNPCLHPGD
Sbjct: 717 LDETRTLEYGQVFVQVSCTGRMQFHNNGLFMYGGSESDHHTAVLKGKVVIAKNPCLHPGD 776
Query: 1306 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1127
+RVL AV+VP LHHMVDCV+FPQKG+RPHPNECSGSDLDGDIYFVSWD DLIP R V PM
Sbjct: 777 IRVLSAVDVPELHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDADLIPPRVVTPM 836
Query: 1126 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELAK 947
+Y A +EILDHDV IEEV EYFTNY+VNDSLG+IANAHTVFADK+P AES+ CTELA+
Sbjct: 837 DYTSAPSEILDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKKPLKAESEECTELAR 896
Query: 946 LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 767
LFSIAVDFPKTGVPAEIP+HLHVKE PDFMEK DK YESK VIGKL+RAIKD T G
Sbjct: 897 LFSIAVDFPKTGVPAEIPTHLHVKEYPDFMEKLDKVTYESKGVIGKLYRAIKD--HTWGQ 954
Query: 766 IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 587
I++FT+E+ARKSYDPDMEVDGFE+Y+++A FK +YD KLGNL+++YGIKTE E+LSGSI
Sbjct: 955 IKAFTKEMARKSYDPDMEVDGFEEYLDEAFLFKGEYDFKLGNLLEHYGIKTEAEILSGSI 1014
Query: 586 LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 407
+KMSK+F+K D EAI LAVRSL+KE R WFNEK + D + +DD YAKASAWYHVTYHP
Sbjct: 1015 MKMSKNFTKYKDGEAIGLAVRSLRKEARAWFNEK--RIDCEDEDDVYAKASAWYHVTYHP 1072
Query: 406 NYWGIYNEGMKRAHFLSFPWIVYDKLIHI-XXXXXXXXXXXXXASLQYSFGRSLRL 242
+YWG YNEG+ R HFLSFPW VYDKL I SLQ+ SLR+
Sbjct: 1073 DYWGCYNEGLNRPHFLSFPWCVYDKLTIIKKKTMSMRKAKTILFSLQHKMETSLRM 1128
>ref|XP_011024314.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Populus
euphratica]
Length = 1132
Score = 1476 bits (3821), Expect = 0.0
Identities = 736/1136 (64%), Positives = 880/1136 (77%), Gaps = 3/1136 (0%)
Frame = -2
Query: 3640 SRTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRF 3461
S+T+++ GFP++ +A V+ FLE++ G GTV ALK+R + G +R + IVQFTT+R
Sbjct: 2 SKTVQVSGFPSSATAGAVQVFLESYTGG-GTVEALKIRETRTRG--ARKYAIVQFTTTRA 58
Query: 3460 AEEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLW 3281
E+I S A Q+L +YG +YL + +RDIIP+PRS+L +E LH G Q S +KFS +W
Sbjct: 59 TEQIISLANQRL-WYGRSYLNARPMDRDIIPQPRSSLHTMESVTLHFGYQTSKEKFSAVW 117
Query: 3280 NAADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAP 3101
+ +V VNFG G+RKL FFLSH+ EYKL L +E+IWQI+L PR ++ K+LLIQ+ AP
Sbjct: 118 SGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAP 177
Query: 3100 RIYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPD 2921
RIY++ PS N+F+ P LNYFRD D+QW+R DFTP C IG SS+LCL++P H +LP+
Sbjct: 178 RIYEREVPSSLNLFEDPLLNYFRDIPDEQWVRTTDFTPSCSIGHSSSLCLELPSHLQLPN 237
Query: 2920 IHENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMG 2741
+ENF YYKENEG F+LE GS+F R DLVPIV P + LPY ILF+VN LVQNG + G
Sbjct: 238 FNENFFYYKENEGTFVLESGSTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAG 297
Query: 2740 PTLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLST 2561
LDD F+ LV+P + IEHALE L +LKE C+EP++W QY KY S PR
Sbjct: 298 SMLDDIFYRLVDPNRMPVRCIEHALEKLYHLKECCYEPSKWFNEQYRKYLTSGNPPRSPV 357
Query: 2560 ISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSM 2381
+SLD+GLVY+++VQ+TP K++FCGPEVN+SNRVLR++ ++I+NF+R+SFVDEE +K+ S
Sbjct: 358 LSLDAGLVYVYKVQITPCKVFFCGPEVNISNRVLRQYLEEIDNFLRVSFVDEELEKIHST 417
Query: 2380 DLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSEL 2201
D+ PR S + + T IY RILSTLR GIVIG+KKFEFLAFSSSQLRENS WMFASR L
Sbjct: 418 DVSPRTSSRNELRRTAIYNRILSTLRNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477
Query: 2200 TAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIETE--SRKYNF 2027
TAADIRRWMG F +I+NVA+YAARLGQSF SS ETL+V +HEIEII DIE +Y F
Sbjct: 478 TAADIRRWMGSFHQIRNVARYAARLGQSFSSSTETLSVSRHEIEIISDIEVSRGGTRYLF 537
Query: 2026 SDGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYK 1850
SDGIGKISA FAR+VA+KC TPSAFQIRY GYKGVVA+DP S KLSLR SM KY+
Sbjct: 538 SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSTKKLSLRMSMFKYE 597
Query: 1849 SENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQE 1670
SEN KLDVL+ SKYQPC+LNRQLITLLSTLGV DH FERKQ+EAVDQLD +LTD +RAQE
Sbjct: 598 SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAILTDPLRAQE 657
Query: 1669 ALEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMM 1490
AL +MSPGEN +LKEMLLCGY+PDAEPFLSM LQTFRASKL ELRTKTRIFIP GR MM
Sbjct: 658 ALVLMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRLMM 717
Query: 1489 GCLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPG 1310
GCLDETRTLE+GQVFV S + + +D D+F + ++ G V VAKNPCLHPG
Sbjct: 718 GCLDETRTLEHGQVFVQFSGSRFRNLYDSS-DVFSERGRGQCYLIEGSVVVAKNPCLHPG 776
Query: 1309 DVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPP 1130
DVR+L+AV+VPALHHMVDCV+FPQKG RPHPN+CSGSDLDGDIYFV WDP+LIPS+Q+ P
Sbjct: 777 DVRILKAVDVPALHHMVDCVVFPQKGPRPHPNQCSGSDLDGDIYFVCWDPELIPSQQISP 836
Query: 1129 MEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELA 950
M+Y P LDHDV IEEVEEYFTNY+VNDSLG+IANAHT FADKE A S+ C ELA
Sbjct: 837 MDYTPEPTLQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKESLKAMSEPCLELA 896
Query: 949 KLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTG 770
+ FSIAVDFPKTGVPAEIPS+L V+E PDFMEKPDKP+YES+ VIGKLFR +KD+AP T
Sbjct: 897 RKFSIAVDFPKTGVPAEIPSNLRVREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTS 956
Query: 769 HIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGS 590
I+SFT +VAR+ YDPDMEVDGFEDYI+DA ++K YD KLGNLM+YYGIKTE E+LSGS
Sbjct: 957 SIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGS 1016
Query: 589 ILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYH 410
+KMSKSF+K+ DAEAI +AVRSL+KE R WFNEKGS D DD AKASAWYHVTYH
Sbjct: 1017 FMKMSKSFTKKRDAEAIGMAVRSLRKEARSWFNEKGSGLDSQA-DDVDAKASAWYHVTYH 1075
Query: 409 PNYWGIYNEGMKRAHFLSFPWIVYDKLIHIXXXXXXXXXXXXXASLQYSFGRSLRL 242
NYWG YNEGM R HFLSFPW +YDKLI I S++ F R L L
Sbjct: 1076 HNYWGCYNEGMNRDHFLSFPWCLYDKLIQIKKNSARIRRSRILHSVERQFSRGLHL 1131
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 1475 bits (3819), Expect = 0.0
Identities = 733/1113 (65%), Positives = 878/1113 (78%), Gaps = 7/1113 (0%)
Frame = -2
Query: 3637 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKN-VGPRSRAFVIVQFTTSRF 3461
+TI++ GFPA V+A+ VK FLE+ G GTV ALK+R PK VG R + IVQFTT
Sbjct: 3 KTIQVFGFPAGVTAEAVKDFLESKTGG-GTVYALKLRTPKKGVG---RLYAIVQFTTKEA 58
Query: 3460 AEEITSKA-EQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTL 3284
A+ I S A + L+YG +YL + E+D +P+PR+ + +EH LH GC++S++KF+ L
Sbjct: 59 ADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVL 118
Query: 3283 WNAADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAA 3104
W +V VNFGFG+RK++F LSH G EY+LEL YE+IW+I+L CPR + K+LLIQ+ A
Sbjct: 119 WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGA 178
Query: 3103 PRIYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLP 2924
PRI++K S D +++SP N+F++ DDQW+R DFTP IGQS+ LC+++PY +LP
Sbjct: 179 PRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELP 238
Query: 2923 DIHENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIM 2744
D ENF YYKE+E +F+LE GS++ R LDLVPIV P I LPY+ILFK+N LVQNG +
Sbjct: 239 DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVA 298
Query: 2743 GPTLDDEFFNLVNP--CSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPR 2570
GP LD F+ LV+P + IEHAL+ L +LKE C+EP+RWL QY KY S +P
Sbjct: 299 GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPS 358
Query: 2569 LSTISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKM 2390
ISLD GLVY+HRVQVTP+++YFCGPE+NVSNRVLR F DI+NF+RISF+DE+ DK+
Sbjct: 359 SPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI 418
Query: 2389 RSMDLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASR 2210
S DL PR S+ T IY RILSTLR GI+IG++KFEFLAFSSSQLRE+SAWMFASR
Sbjct: 419 HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR 478
Query: 2209 SELTAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIETE--SRK 2036
LTAA+IR WMG+F EI+NVAKYAARLGQSF SSKETL+V EIEIIPD++ E K
Sbjct: 479 YGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 538
Query: 2035 YNFSDGIGKISANFARRVALKCDLSSTP-SAFQIRYGGYKGVVAIDPESRFKLSLRKSMC 1859
Y FSDGIGK+SA FAR+VA KC L P SAFQIRYGGYKGVVA DP S KLSLR SM
Sbjct: 539 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMR 598
Query: 1858 KYKSENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIR 1679
KY+SE KLDVL+WSKYQPC+LNRQLI+LLSTLG+ D FE+KQ+EAV QLD +LTD ++
Sbjct: 599 KYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 658
Query: 1678 AQEALEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGR 1499
AQEALE+MSPGEN +LKE+L+CGYKPDAEPFLSM LQTFRASKL ELRTKTRIFIP GR
Sbjct: 659 AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 718
Query: 1498 SMMGCLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCL 1319
SMMGCLDETRTL YGQVFV IS AG +Q + +F +R + ++ G V VAKNPCL
Sbjct: 719 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGES-SLFSSSRSRQRFIVQGLVVVAKNPCL 777
Query: 1318 HPGDVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQ 1139
HPGDVRVL+AVNVPALHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WD +LIP +Q
Sbjct: 778 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 837
Query: 1138 VPPMEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCT 959
PPM+Y PA + LDHDV+IE+VEEYFTNY+VNDSLG+IANAHTVFAD+EP A S+ C
Sbjct: 838 DPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCL 897
Query: 958 ELAKLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAP 779
+LA+ FSIAVDFPKTGVPAEIP HL+VKE PDFMEKPDKP YES+ VIGKLFRA+KD+AP
Sbjct: 898 QLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAP 957
Query: 778 TTGHIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVL 599
T I+ FT+EVAR+SYDPDMEVDGFED+I+DA++ K YD KLGNLMDYYGIKTE E+L
Sbjct: 958 HTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEIL 1017
Query: 598 SGSILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHV 419
+GSI+KMSKSF+KR DAEAI +AVR+L+KE R WF EK D +DDAYAKASAWYHV
Sbjct: 1018 TGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGS---DTEDDAYAKASAWYHV 1074
Query: 418 TYHPNYWGIYNEGMKRAHFLSFPWIVYDKLIHI 320
TYHP+YWG YN GM R HFLSFPW VYD+L+ I
Sbjct: 1075 TYHPDYWGCYNHGMNRDHFLSFPWCVYDRLVEI 1107
>ref|XP_011024307.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Populus
euphratica]
Length = 1132
Score = 1475 bits (3818), Expect = 0.0
Identities = 736/1136 (64%), Positives = 879/1136 (77%), Gaps = 3/1136 (0%)
Frame = -2
Query: 3640 SRTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRF 3461
S+T+++ GFP++ +A V+ FLE++ G GTV ALK+R + G +R + IVQFTT+R
Sbjct: 2 SKTVQVSGFPSSATAGAVQVFLESYTGG-GTVEALKIRETRTRG--ARKYAIVQFTTTRA 58
Query: 3460 AEEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLW 3281
E+I S A Q+L +YG +YL + +RDIIP+PRS+L +E LH G Q S +KFS +W
Sbjct: 59 TEQIISLANQRL-WYGRSYLNARPMDRDIIPQPRSSLHTMESVTLHFGYQTSKEKFSAVW 117
Query: 3280 NAADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAP 3101
+ +V VNFG G+RKL FFLSH+ EYKL L +E+IWQI+L PR ++ K+LLIQ+ AP
Sbjct: 118 SGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAP 177
Query: 3100 RIYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPD 2921
RIY++ PS N+F+ P LNYFRD D+QW+R DFTP C IG SS+LCL++P H +LP+
Sbjct: 178 RIYEREVPSSLNLFEDPLLNYFRDIPDEQWVRTTDFTPSCSIGHSSSLCLELPSHLQLPN 237
Query: 2920 IHENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMG 2741
+ENF YYKENEG F+LE GS+F R DLVPIV P + LPY ILF+VN LVQNG + G
Sbjct: 238 FNENFFYYKENEGTFVLESGSTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAG 297
Query: 2740 PTLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLST 2561
LDD F+ LV+P + IEHALE L +LKE C+EP++W QY KY S PR
Sbjct: 298 SMLDDIFYRLVDPNRMPVRCIEHALEKLYHLKECCYEPSKWFNEQYRKYLTSGNPPRSPV 357
Query: 2560 ISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSM 2381
+SLD+GLVY+++VQ+TP K++FCGPEVN+SNRVLR++ ++I+NF+R+SFVDEE +K+ S
Sbjct: 358 LSLDAGLVYVYKVQITPCKVFFCGPEVNISNRVLRQYLEEIDNFLRVSFVDEELEKIHST 417
Query: 2380 DLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSEL 2201
D+ PR S + + T IY RILSTLR GIVIG+KKFEFLAFSSSQLRENS WMFASR L
Sbjct: 418 DVSPRTSSRNELRRTAIYNRILSTLRNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477
Query: 2200 TAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIETE--SRKYNF 2027
TAADIRRWMG F +I+NVA+YAARLGQSF SS ETL+V +HEIEII DIE +Y F
Sbjct: 478 TAADIRRWMGSFHQIRNVARYAARLGQSFSSSTETLSVSRHEIEIISDIEVSRGGTRYLF 537
Query: 2026 SDGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYK 1850
SDGIGKISA FAR+VA+KC TPSAFQIRY GYKGVVA+DP S KLSLR SM KY+
Sbjct: 538 SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSTKKLSLRMSMFKYE 597
Query: 1849 SENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQE 1670
SEN KLDVL+ SKYQPC+LNRQLITLLSTLGV DH FERKQ+EAVDQLD +LTD +RAQE
Sbjct: 598 SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAILTDPLRAQE 657
Query: 1669 ALEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMM 1490
AL +MSPGEN +LKEMLLCGY+PDAEPFLSM LQTFRASKL ELRTKTRIFIP GR MM
Sbjct: 658 ALVLMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRLMM 717
Query: 1489 GCLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPG 1310
GCLDETRTLE+GQVFV S + + +D D+F + ++ G V VAKNPCLHPG
Sbjct: 718 GCLDETRTLEHGQVFVQFSGSRFRNLYDSS-DVFSERGRGQCYLIEGSVVVAKNPCLHPG 776
Query: 1309 DVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPP 1130
DVR+L+AV+VPALHHMVDCV+FPQKG RPHP ECSGSDLDGDIYFV WDP+LIPS+Q+ P
Sbjct: 777 DVRILKAVDVPALHHMVDCVVFPQKGPRPHPKECSGSDLDGDIYFVCWDPELIPSQQISP 836
Query: 1129 MEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELA 950
M+Y P LDHDV IEEVEEYFTNY+VNDSLG+IANAHT FADKE A S+ C ELA
Sbjct: 837 MDYTPEPTLQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKESLKAMSEPCLELA 896
Query: 949 KLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTG 770
+ FSIAVDFPKTGVPAEIPS+L V+E PDFMEKPDKP+YES+ VIGKLFR +KD+AP T
Sbjct: 897 RKFSIAVDFPKTGVPAEIPSNLRVREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTS 956
Query: 769 HIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGS 590
I+SFT +VAR+ YDPDMEVDGFEDYI+DA ++K YD KLGNLM+YYGIKTE E+LSGS
Sbjct: 957 SIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGS 1016
Query: 589 ILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYH 410
+KMSKSF+K+ DAEAI +AVRSL+KE R WFNEKGS D DD AKASAWYHVTYH
Sbjct: 1017 FMKMSKSFTKKRDAEAIGMAVRSLRKEARSWFNEKGSGLDSQA-DDVDAKASAWYHVTYH 1075
Query: 409 PNYWGIYNEGMKRAHFLSFPWIVYDKLIHIXXXXXXXXXXXXXASLQYSFGRSLRL 242
NYWG YNEGM R HFLSFPW +YDKLI I S++ F R L L
Sbjct: 1076 HNYWGCYNEGMNRDHFLSFPWCLYDKLIQIKKNSARIRRSRILHSVERQFSRGLHL 1131
>ref|XP_008812977.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Phoenix
dactylifera] gi|672186025|ref|XP_008812978.1| PREDICTED:
probable RNA-dependent RNA polymerase 1 [Phoenix
dactylifera]
Length = 1131
Score = 1471 bits (3808), Expect = 0.0
Identities = 741/1136 (65%), Positives = 889/1136 (78%), Gaps = 3/1136 (0%)
Frame = -2
Query: 3640 SRTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRF 3461
S+TI I GFP T +A VK FLE H G+ GT+ ALK R PK V +SRA+ IVQF ++
Sbjct: 3 SKTINIHGFPTTATAPSVKEFLEVHTGK-GTIYALKFRLPKYVTAKSRAYAIVQFIANKH 61
Query: 3460 AEEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLW 3281
AE I K +L++ L V+ ERDI+PKPR++L LE+T +H G VS +KFS LW
Sbjct: 62 AESIACK---RLVWVDGFVLKVRHMERDIVPKPRTSLFVLENTTVHFGSPVSQNKFSVLW 118
Query: 3280 NAADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAP 3101
+ DV VNFGF +RK+ FFL YK EL YESIW+IQL + +FLLIQV AAP
Sbjct: 119 SPKDVRVNFGFSMRKIYFFLVQGSHSYKFELAYESIWEIQLHHSSTKYLQFLLIQVVAAP 178
Query: 3100 RIYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPD 2921
++Y+ + + + + P NYF+D DDQW+R DF+PLC IGQSS LCLQ+ Y LP+
Sbjct: 179 KVYELSLRNSGLLHEDPEYNYFKDLPDDQWVRTTDFSPLCSIGQSSALCLQLSYDCDLPN 238
Query: 2920 IHENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMG 2741
I + F +YKE EG+F LE GSS+ R LDLVPIVEP RI +PYKILFK+N +VQNG + G
Sbjct: 239 IRDYFPFYKEFEGRFDLERGSSYSRSLDLVPIVEPRPRIEVPYKILFKINHMVQNGTLFG 298
Query: 2740 PTLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLST 2561
PTLD +FF LV+P I DYIE A+E + + K + F+PA WL ++Y K SLR P+ +
Sbjct: 299 PTLDGKFFGLVSPQFIRIDYIECAIEEMYHSKSSFFDPANWLTKKYLKLKRSLRLPKSPS 358
Query: 2560 ISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSM 2381
ISLD+GLVY++RVQVTP+K+YF GPEVNVSNRV+R FS+DIENF+R+SFVDE+W+KM S
Sbjct: 359 ISLDAGLVYVYRVQVTPSKVYFYGPEVNVSNRVVRHFSEDIENFVRVSFVDEDWEKMHST 418
Query: 2380 DLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSEL 2201
DL R+ S+ E HT +Y+RILS LR GI IG+KKFEFLAFSSSQLRENSAWMFAS L
Sbjct: 419 DLSSRSGSAGNEMHTALYRRILSVLRNGITIGDKKFEFLAFSSSQLRENSAWMFASNERL 478
Query: 2200 TAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIETESRKYNFSD 2021
TAA IR+WMGDF EI+NVAKYAARLGQSF SS ETLTV KH+++ IPD+ KY FSD
Sbjct: 479 TAAAIRKWMGDFHEIRNVAKYAARLGQSFSSSTETLTVDKHDVDDIPDV--RYGKYVFSD 536
Query: 2020 GIGKISANFARRVALKCDL-SSTPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKSE 1844
GIGKISA FA+RVA+KC L SSTPSAFQIRYGGYKGVVA+DP S KLSLR+SM KYKS+
Sbjct: 537 GIGKISAEFAKRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSSKKLSLRESMRKYKSD 596
Query: 1843 NMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQEAL 1664
N KLDVL++SK+QPC+LNRQLITLLSTLGV+D FE KQ+EAV+QLD +LTD +RAQEA+
Sbjct: 597 NTKLDVLAYSKHQPCFLNRQLITLLSTLGVRDWIFEMKQEEAVNQLDKILTDPVRAQEAI 656
Query: 1663 EMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMGC 1484
E+M GE VLKE+LLCGYKPD+EPFLSM LQTFRAS+L EL+TK+RIFIPKGR+MMGC
Sbjct: 657 ELMPSGETTSVLKELLLCGYKPDSEPFLSMVLQTFRASRLLELKTKSRIFIPKGRAMMGC 716
Query: 1483 LDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLD-ESVVLVGKVFVAKNPCLHPGD 1307
LDET+ LEYG+VFV +S GR QF ++GL ++ G+ D + VL GKV VAKNPCLHPGD
Sbjct: 717 LDETKILEYGEVFVQVSCTGRMQFHNNGLFVYGGSESDHHTAVLKGKVVVAKNPCLHPGD 776
Query: 1306 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1127
+RVL AV+VP LHHMVDCV+FPQKG+RPHPNECSGSDLDGDIYFVSWD DLIP R+V PM
Sbjct: 777 IRVLSAVDVPDLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDADLIPPREVTPM 836
Query: 1126 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELAK 947
+Y A +EILDHDV IEEV EYFT+Y+VNDSLG+IANAHTVFADKEPR AES+SC ELA+
Sbjct: 837 DYTSAPSEILDHDVTIEEVMEYFTDYIVNDSLGIIANAHTVFADKEPRKAESESCIELAR 896
Query: 946 LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 767
LFSIAVDFPKTGVPAEIP+HLHVKE PDFMEK DK YESK VIGKLFRAIKD G
Sbjct: 897 LFSIAVDFPKTGVPAEIPTHLHVKEYPDFMEKLDKVTYESKGVIGKLFRAIKDHTSHLGQ 956
Query: 766 IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 587
I++FT+E+A KSYDPDMEVDGF++Y+++A WFK +YD KLGNL+++YGIKTE E+LSGSI
Sbjct: 957 IKAFTKEMAMKSYDPDMEVDGFKEYLDEAFWFKGEYDFKLGNLLEHYGIKTEAEILSGSI 1016
Query: 586 LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 407
+KMSK+F+K D EAI LA+RSL+KE R WF+EK + D + +DD YAKASAWYHVTYHP
Sbjct: 1017 MKMSKTFTKYKDGEAIGLALRSLRKEARAWFDEK--RIDCEDEDDVYAKASAWYHVTYHP 1074
Query: 406 NYWGIYNEGMKRAHFLSFPWIVYDKLIHI-XXXXXXXXXXXXXASLQYSFGRSLRL 242
+YWG YNEG+ R HFLSFPW VYDKL I SL + RSLR+
Sbjct: 1075 DYWGCYNEGLNRPHFLSFPWCVYDKLTLIKKKKISMRKYETELFSLHHQVKRSLRM 1130
>ref|XP_012072326.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha
curcas]
Length = 1150
Score = 1469 bits (3802), Expect = 0.0
Identities = 733/1126 (65%), Positives = 870/1126 (77%), Gaps = 3/1126 (0%)
Frame = -2
Query: 3688 SSYQFV*IYSGSMAGRSRTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVG 3509
SSY+ + +A +TI + GFP V+ D+VK LE+H G+ GTV A+K+R KN G
Sbjct: 10 SSYRVIFGSLWGIALMGKTIHVYGFPPDVTVDEVKKCLESHSGD-GTVFAMKIRETKNGG 68
Query: 3508 PRSRAFVIVQFTTSRFAEEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTV 3329
R + IVQF T+R AE I S K + YG +YL + +DI+P PR+ L +++H
Sbjct: 69 QRK--YAIVQFQTARDAELIISL--NKRIRYGTSYLKARTLAKDIVPNPRTFLHSMDHIT 124
Query: 3328 LHIGCQVSDDKFSTLWNAADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCP 3149
LH GC++S +KFS LW +V VNFGFGLRKL FFLSH ++YKL+L YE++WQI+L CP
Sbjct: 125 LHFGCRISKEKFSVLWTGTNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCP 184
Query: 3148 RKRSKKFLLIQVQAAPRIYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQ 2969
R RS K+LLIQ+ APRI++K S N+F+SP NYF+DT D+QW+R +DFTP C IG
Sbjct: 185 RGRSVKYLLIQLYGAPRIFEKEIAS-SNVFESPLFNYFKDTPDEQWVRTIDFTPFCLIGH 243
Query: 2968 SSTLCLQVPYHQKLPDIHENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYK 2789
SS LCL+ P +P ENF YYKE+E F+LE G++F LDLVPIV P + LP++
Sbjct: 244 SSGLCLEFPSSINVPKFQENFSYYKESEAIFVLENGNAFSCNLDLVPIVGPPSGVDLPFE 303
Query: 2788 ILFKVNSLVQNGIIMGPTLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRR 2609
ILF+VN LVQ+G + G LD F+ LV+P ++ D IEHALE L +LKE C+EP+ WL
Sbjct: 304 ILFRVNLLVQHGCLPGSALDSSFYKLVDPSRMNIDCIEHALEKLFHLKECCYEPSMWLNE 363
Query: 2608 QYNKYAMSLRRPRLSTISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENF 2429
QY KY S PR +ISLD+GL Y+ R Q+TP K YFCGPEVNVSNRV+R +S DI NF
Sbjct: 364 QYRKYLTSKYLPRSPSISLDTGLEYVRRGQITPCKAYFCGPEVNVSNRVIRRYSKDINNF 423
Query: 2428 IRISFVDEEWDKMRSMDLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSS 2249
+R+SFVDEE K+ S DL PRA S +G++ T IY RILSTL+ GIVIG K+FEFLAFSSS
Sbjct: 424 LRVSFVDEELGKIHSTDLSPRASSGNGDRRTAIYNRILSTLQNGIVIGNKRFEFLAFSSS 483
Query: 2248 QLRENSAWMFASRSELTAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIE 2069
QLRENS WMFASR LTAADIR WMG+F +I+NVAKYAARLGQSFGSS ETL+V++++IE
Sbjct: 484 QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVRRNQIE 543
Query: 2068 IIPDIETES--RKYNFSDGIGKISANFARRVALKCDLSST-PSAFQIRYGGYKGVVAIDP 1898
I+PDIE E KY FSDGIGKISA FARRVALKC PSAFQIRYGGYKGVVA+DP
Sbjct: 544 ILPDIEAERGRTKYLFSDGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDP 603
Query: 1897 ESRFKLSLRKSMCKYKSENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEA 1718
S KLSLRKSMCKY+SEN KLDVL +SKYQPC+LNRQ+ITLLSTLGV DH FE+KQ+EA
Sbjct: 604 TSSKKLSLRKSMCKYESENTKLDVLGYSKYQPCFLNRQMITLLSTLGVPDHIFEKKQREA 663
Query: 1717 VDQLDMMLTDSIRAQEALEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFE 1538
VDQLD +LT+S+RAQEAL++MSPGE +L EMLLCGY+PDAEPFL+M LQ FRASKL +
Sbjct: 664 VDQLDAILTNSLRAQEALDLMSPGETTNILNEMLLCGYQPDAEPFLAMMLQMFRASKLLD 723
Query: 1537 LRTKTRIFIPKGRSMMGCLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVV 1358
+RTK+RIF+P GRSMMGCLDETR LEYGQVFV S + KQ +D MF G V
Sbjct: 724 VRTKSRIFVPNGRSMMGCLDETRNLEYGQVFVQFSGSKHKQVYDSST-MFGGIGSGNRFV 782
Query: 1357 LVGKVFVAKNPCLHPGDVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIY 1178
+ G+V VAKNPCLHPGD+RVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGDIY
Sbjct: 783 IEGQVIVAKNPCLHPGDIRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIY 842
Query: 1177 FVSWDPDLIPSRQVPPMEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFA 998
FV WDPDLIP Q+PPM+Y P + LDHDV I+EV EYFTNY++NDSLG+I+NAHTVFA
Sbjct: 843 FVCWDPDLIPRLQIPPMDYTPEPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFA 902
Query: 997 DKEPRMAESDSCTELAKLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRV 818
D+EP A S C ELA FSIAVDFPKTGVPAEI SHL VKE PDFMEKPDKP YES+ V
Sbjct: 903 DREPAKAMSKPCLELASKFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNV 962
Query: 817 IGKLFRAIKDMAPTTGHIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNL 638
IGKLFRA++D+AP T I+SFT EVAR+ YDPDMEVDGF+DYI+DA +K YD KLGN
Sbjct: 963 IGKLFRAVRDIAPHTSSIKSFTLEVARQCYDPDMEVDGFKDYIDDAFDYKSNYDYKLGNH 1022
Query: 637 MDYYGIKTEPEVLSGSILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDID 458
MDYYGI+TE E+L GSI+KMSK+F+K+ DAEAI LAV SL KE R WFNE GS D + +
Sbjct: 1023 MDYYGIRTEAEILGGSIMKMSKAFTKKRDAEAIGLAVSSLIKEARSWFNENGSGLDSE-E 1081
Query: 457 DDAYAKASAWYHVTYHPNYWGIYNEGMKRAHFLSFPWIVYDKLIHI 320
DD YAKASAWY+VTYHP YWG YNEGM R HFLSFPW VYDKLI I
Sbjct: 1082 DDVYAKASAWYYVTYHPTYWGRYNEGMNRDHFLSFPWCVYDKLIQI 1127
>ref|XP_012072327.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
curcas] gi|802596581|ref|XP_012072328.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
curcas]
Length = 1126
Score = 1467 bits (3798), Expect = 0.0
Identities = 729/1109 (65%), Positives = 863/1109 (77%), Gaps = 3/1109 (0%)
Frame = -2
Query: 3637 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3458
+TI + GFP V+ D+VK LE+H G+ GTV A+K+R KN G R + IVQF T+R A
Sbjct: 3 KTIHVYGFPPDVTVDEVKKCLESHSGD-GTVFAMKIRETKNGGQRK--YAIVQFQTARDA 59
Query: 3457 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3278
E I S K + YG +YL + +DI+P PR+ L +++H LH GC++S +KFS LW
Sbjct: 60 ELIISL--NKRIRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWT 117
Query: 3277 AADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3098
+V VNFGFGLRKL FFLSH ++YKL+L YE++WQI+L CPR RS K+LLIQ+ APR
Sbjct: 118 GTNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRSVKYLLIQLYGAPR 177
Query: 3097 IYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2918
I++K S N+F+SP NYF+DT D+QW+R +DFTP C IG SS LCL+ P +P
Sbjct: 178 IFEKEIAS-SNVFESPLFNYFKDTPDEQWVRTIDFTPFCLIGHSSGLCLEFPSSINVPKF 236
Query: 2917 HENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2738
ENF YYKE+E F+LE G++F LDLVPIV P + LP++ILF+VN LVQ+G + G
Sbjct: 237 QENFSYYKESEAIFVLENGNAFSCNLDLVPIVGPPSGVDLPFEILFRVNLLVQHGCLPGS 296
Query: 2737 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2558
LD F+ LV+P ++ D IEHALE L +LKE C+EP+ WL QY KY S PR +I
Sbjct: 297 ALDSSFYKLVDPSRMNIDCIEHALEKLFHLKECCYEPSMWLNEQYRKYLTSKYLPRSPSI 356
Query: 2557 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2378
SLD+GL Y+ R Q+TP K YFCGPEVNVSNRV+R +S DI NF+R+SFVDEE K+ S D
Sbjct: 357 SLDTGLEYVRRGQITPCKAYFCGPEVNVSNRVIRRYSKDINNFLRVSFVDEELGKIHSTD 416
Query: 2377 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2198
L PRA S +G++ T IY RILSTL+ GIVIG K+FEFLAFSSSQLRENS WMFASR LT
Sbjct: 417 LSPRASSGNGDRRTAIYNRILSTLQNGIVIGNKRFEFLAFSSSQLRENSCWMFASRDGLT 476
Query: 2197 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIETES--RKYNFS 2024
AADIR WMG+F +I+NVAKYAARLGQSFGSS ETL+V++++IEI+PDIE E KY FS
Sbjct: 477 AADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVRRNQIEILPDIEAERGRTKYLFS 536
Query: 2023 DGIGKISANFARRVALKCDLSST-PSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1847
DGIGKISA FARRVALKC PSAFQIRYGGYKGVVA+DP S KLSLRKSMCKY+S
Sbjct: 537 DGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDPTSSKKLSLRKSMCKYES 596
Query: 1846 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQEA 1667
EN KLDVL +SKYQPC+LNRQ+ITLLSTLGV DH FE+KQ+EAVDQLD +LT+S+RAQEA
Sbjct: 597 ENTKLDVLGYSKYQPCFLNRQMITLLSTLGVPDHIFEKKQREAVDQLDAILTNSLRAQEA 656
Query: 1666 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1487
L++MSPGE +L EMLLCGY+PDAEPFL+M LQ FRASKL ++RTK+RIF+P GRSMMG
Sbjct: 657 LDLMSPGETTNILNEMLLCGYQPDAEPFLAMMLQMFRASKLLDVRTKSRIFVPNGRSMMG 716
Query: 1486 CLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1307
CLDETR LEYGQVFV S + KQ +D MF G V+ G+V VAKNPCLHPGD
Sbjct: 717 CLDETRNLEYGQVFVQFSGSKHKQVYDSST-MFGGIGSGNRFVIEGQVIVAKNPCLHPGD 775
Query: 1306 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1127
+RVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WDPDLIP Q+PPM
Sbjct: 776 IRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPRLQIPPM 835
Query: 1126 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELAK 947
+Y P + LDHDV I+EV EYFTNY++NDSLG+I+NAHTVFAD+EP A S C ELA
Sbjct: 836 DYTPEPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFADREPAKAMSKPCLELAS 895
Query: 946 LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 767
FSIAVDFPKTGVPAEI SHL VKE PDFMEKPDKP YES+ VIGKLFRA++D+AP T
Sbjct: 896 KFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNVIGKLFRAVRDIAPHTSS 955
Query: 766 IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 587
I+SFT EVAR+ YDPDMEVDGF+DYI+DA +K YD KLGN MDYYGI+TE E+L GSI
Sbjct: 956 IKSFTLEVARQCYDPDMEVDGFKDYIDDAFDYKSNYDYKLGNHMDYYGIRTEAEILGGSI 1015
Query: 586 LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 407
+KMSK+F+K+ DAEAI LAV SL KE R WFNE GS D + +DD YAKASAWY+VTYHP
Sbjct: 1016 MKMSKAFTKKRDAEAIGLAVSSLIKEARSWFNENGSGLDSE-EDDVYAKASAWYYVTYHP 1074
Query: 406 NYWGIYNEGMKRAHFLSFPWIVYDKLIHI 320
YWG YNEGM R HFLSFPW VYDKLI I
Sbjct: 1075 TYWGRYNEGMNRDHFLSFPWCVYDKLIQI 1103
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1462 bits (3785), Expect = 0.0
Identities = 737/1135 (64%), Positives = 875/1135 (77%), Gaps = 3/1135 (0%)
Frame = -2
Query: 3637 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3458
+TI++ GF + VSA +VK FLE + G E TV ALK+R K G RAF IVQFT S A
Sbjct: 3 KTIQVYGFLSDVSAGEVKTFLEGYTGRE-TVYALKIRQHKKSG---RAFAIVQFTRSSDA 58
Query: 3457 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3278
I A Q+L YYG +YL ++ E DI+PKPR L +E ++ GCQVS++KF LW
Sbjct: 59 GLIIRLANQRL-YYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117
Query: 3277 AADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3098
A +V +NFG G+RKL F LS+ +YKLELFYE+IWQI+LRCP ++ K LLIQ+ APR
Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177
Query: 3097 IYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2918
IY+K P+ + +FD P LNYF+D DDQW+R DFT CIGQSS L L++P++ +LP+
Sbjct: 178 IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNF 237
Query: 2917 HENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2738
ENF YYKENEG+ +LE GSS+ L LVPIV P + I LP++ILFKVN LVQNG I GP
Sbjct: 238 RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297
Query: 2737 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2558
LDD F+ LV+PC + YI+HALE L L+E C+EP+RWL +Y ++ S + TI
Sbjct: 298 ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357
Query: 2557 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2378
SLD GLVY+ RVQ+TP+++YFCGPE+NVSNRVLR+F +DI+NF+RISFVDEE +K+ S +
Sbjct: 358 SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417
Query: 2377 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2198
+ R R TGIYKRILSTLR GIVIG K+FEFLAFSSSQLRENSAWMFASR LT
Sbjct: 418 VQARGR------RTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLT 471
Query: 2197 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIET--ESRKYNFS 2024
AADIR WMG+FS+I+NVAKYAARLGQSF SS ETL+V K EI +IPDIE + KY FS
Sbjct: 472 AADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFS 531
Query: 2023 DGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1847
DGIGKISA FA++VA KC L TPSAFQIR GG+KGVVAIDP S +KLSLRKSM KY+S
Sbjct: 532 DGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYES 591
Query: 1846 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQEA 1667
EN KLDVL+WSKYQPC+LNRQLITLLSTLGV D AFE+KQ+E VDQL+ +LTD + AQEA
Sbjct: 592 ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEA 651
Query: 1666 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1487
LE+MSPGEN +LKEMLLCGYKPDAEPFLSM L+TFRASKL ELRTK RIF+ KGRSMMG
Sbjct: 652 LELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMG 711
Query: 1486 CLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1307
CLDETRTL YGQVFV F G+R + ++ GKV VAKNPCLHPGD
Sbjct: 712 CLDETRTLNYGQVFVQ----------------FSGSRSERRFIVQGKVIVAKNPCLHPGD 755
Query: 1306 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1127
VRVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGD+YFV WDP+LIP +Q+ PM
Sbjct: 756 VRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPM 815
Query: 1126 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELAK 947
+Y PA+ LDH+V IEE+EEYFTNY+VNDSLG+I+NAHT FAD+EP A S C ELAK
Sbjct: 816 DYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAK 875
Query: 946 LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 767
LFSIAVDFPKTGVPAEIP L VKE PDFMEKPDKP+Y+S VIGKLFR +K++AP
Sbjct: 876 LFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECS 935
Query: 766 IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 587
I+ TRE ++ YDPDMEV+GFEDYI+DA + K +YD KLGNLMDYYG+KTE E+L G I
Sbjct: 936 IKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGI 995
Query: 586 LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 407
+KMS+SF+K+ DAEAIS+AVRSL+KE R WFNEKGS+ D +I DDAYAKASAWY+VTYHP
Sbjct: 996 MKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEI-DDAYAKASAWYYVTYHP 1054
Query: 406 NYWGIYNEGMKRAHFLSFPWIVYDKLIHIXXXXXXXXXXXXXASLQYSFGRSLRL 242
+YWG YNEGM R HFLSFPW VYDKLI I +SL++ F R L L
Sbjct: 1055 SYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109
>ref|XP_002284914.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 1458 bits (3774), Expect = 0.0
Identities = 735/1112 (66%), Positives = 874/1112 (78%), Gaps = 6/1112 (0%)
Frame = -2
Query: 3640 SRTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRF 3461
S+TI++ GFP+ VSAD++K FLE + GE GT+ AL+++ P++ + A V QFT+
Sbjct: 2 SKTIQVYGFPSIVSADEIKEFLEKYTGE-GTIEALEIKQPRSGASMTHAKV--QFTSFEL 58
Query: 3460 AEEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLW 3281
AE I + ++K+ +YG YL ++ + DIIPKPR+ L +++ LH GCQ+SD++F LW
Sbjct: 59 AEFIITLCKKKV-WYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLW 117
Query: 3280 NAADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAP 3101
A +V V FG GLRK FFLSH EYKLEL YE+IWQIQL+ PR + KFLLIQ+ AP
Sbjct: 118 KAINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAP 177
Query: 3100 RIYKKAAPSYDNIFDSPFLNY-FRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLP 2924
+IY+K D P L+Y F++ DDQW+R +DFTP C IGQS LCL++PY +LP
Sbjct: 178 QIYEK---------DVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLP 228
Query: 2923 DIHENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIM 2744
+ ENF YYKEN+G+FILE GSS+ L LVPI+ P Q LP++ILFK+N+LVQNG +
Sbjct: 229 NFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLS 288
Query: 2743 GPTLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLS 2564
GPTLD FF LV+P +IEHALE L +LKE C+EP RWL QY Y +++P
Sbjct: 289 GPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTY---VKKPVAG 345
Query: 2563 T--ISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKM 2390
+ ISLD+GLVY+ RVQ+TP K+YFCGPEVNVSNRVLR + +DI+NF+R+SF+DE +K+
Sbjct: 346 SPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKI 405
Query: 2389 RSMDLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASR 2210
S + PR S +G + TG+Y+RILS L+ GIVIG+KKF+FLAFSSSQLR+NSAWMFASR
Sbjct: 406 HSTVISPRM-SKEGRR-TGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASR 463
Query: 2209 SELTAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIETESRK-- 2036
LTAA+IR WMGDFS+I+NVAKYAARLGQSF SSKETL V K EIE IPDIE +
Sbjct: 464 PGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTT 523
Query: 2035 YNFSDGIGKISANFARRVALKCDL-SSTPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMC 1859
Y FSDGIGKIS A RVA+KC SSTPSAFQIRYGGYKGVVA+DP S KLSLRKSM
Sbjct: 524 YVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMF 583
Query: 1858 KYKSENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIR 1679
KY+S+N LDVL+WSKYQP +LNRQLITLLSTLGVKDH FE+KQ+ AVDQLD +L D +
Sbjct: 584 KYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVA 643
Query: 1678 AQEALEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGR 1499
AQEALE+MSPGEN VLKEML+CGYKPDAEPFLSM LQTFRA+KL ELRTKTRIF+P GR
Sbjct: 644 AQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGR 703
Query: 1498 SMMGCLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCL 1319
SMMGCLDETRTLEYG+VFV IS G +Q F D L ++ +L GK+ VAKNPCL
Sbjct: 704 SMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCL 763
Query: 1318 HPGDVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQ 1139
HPGDVRVL AVNVP LHHMVDCV+FPQKG+RPHPNECSGSDLDGDIYFV WD DLIP +Q
Sbjct: 764 HPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQ 823
Query: 1138 VPPMEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCT 959
+ PM+Y PA ++LDHDV IEEVEEYFTNY+VNDSLG+IANAHTVFADKE A D CT
Sbjct: 824 INPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCT 883
Query: 958 ELAKLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAP 779
ELAKLFSIAVDFPKTGVPAEIP +L VKE PDFMEK DKP YES+ VIGKLFR +KD+AP
Sbjct: 884 ELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAP 943
Query: 778 TTGHIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVL 599
+I+SFTR+VAR+SYDPDMEV GFEDY+ DA ++K +YD KLGNLMDYYGIKTE E+L
Sbjct: 944 HNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEIL 1003
Query: 598 SGSILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHV 419
SGSI++MSKSF +R DAEAI LAV+SL+KE R WFN+ GS+TD + DD YAKASAWYHV
Sbjct: 1004 SGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEA-DDVYAKASAWYHV 1062
Query: 418 TYHPNYWGIYNEGMKRAHFLSFPWIVYDKLIH 323
TYHP+YWG YNEGM R HFLSFPW VYDKLIH
Sbjct: 1063 TYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIH 1094
>gb|KHG26498.1| RNA-dependent RNA polymerase 1 -like protein [Gossypium arboreum]
gi|728850182|gb|KHG29625.1| RNA-dependent RNA polymerase
1 -like protein [Gossypium arboreum]
Length = 1110
Score = 1457 bits (3771), Expect = 0.0
Identities = 733/1135 (64%), Positives = 874/1135 (77%), Gaps = 3/1135 (0%)
Frame = -2
Query: 3637 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3458
+TI++ GF + VSA +VK FLE + G E TV ALK+R K G RA+ IVQFT S A
Sbjct: 3 KTIQVYGFLSDVSAGEVKTFLEGYTGRE-TVYALKIRQHKKSG---RAYAIVQFTRSSDA 58
Query: 3457 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3278
I A Q+L YYG +YL ++ E DI+PKPR L +E ++ GCQVS++KF LW
Sbjct: 59 GLIIRLANQRL-YYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117
Query: 3277 AADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3098
A +V +NFG G+RKL F LS+ +YKLELFYE+IWQI+LRCP ++ K LLIQ+ APR
Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177
Query: 3097 IYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2918
IY+ + + +FD P LNYF+D DDQW+R DFT CIGQSS LCL++P++ +LP+
Sbjct: 178 IYETEVRASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNF 237
Query: 2917 HENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2738
ENF YYKENEG+ +LE GSS+ L LVPIV P + I LP++ILFKVN LVQNG I GP
Sbjct: 238 RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297
Query: 2737 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2558
LDD F+ LV+PC + YI+HALE L L+E C+EP+RWL +Y ++ S + TI
Sbjct: 298 ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357
Query: 2557 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2378
SLD GLVY+ RVQ+TP+++YFCGPE+NVSNRVLR+F +DI+NF+RISFVDEE +K+ S +
Sbjct: 358 SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417
Query: 2377 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2198
+ R R TGIYKRILSTLR GIVIG K+FEFLAFSSSQLRENSAWMFASR LT
Sbjct: 418 VQARGR------RTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLT 471
Query: 2197 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIET--ESRKYNFS 2024
AADIR WMG+FS+I+NVAKYAARLGQSF SS ETL+V K EI +IPDIE + KY FS
Sbjct: 472 AADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFS 531
Query: 2023 DGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1847
DGIGKISA FA++VA KC L TPSAFQIR GG+KGVVAIDP S +KLSLRKSM KY+S
Sbjct: 532 DGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYES 591
Query: 1846 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQEA 1667
EN KLDVL+WSKYQPC+LNRQLITLLSTLGV D+AFE+KQ+E VDQL+ +LTD + AQEA
Sbjct: 592 ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEA 651
Query: 1666 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1487
LE+MSPGEN +LKEMLLCGYKPDAEPFLSM L+TFRASKL ELRTK RIF+ KGRSMMG
Sbjct: 652 LELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMG 711
Query: 1486 CLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1307
CLDETRTL YGQVFV F G+R + ++ GKV VAKNPCLHPGD
Sbjct: 712 CLDETRTLNYGQVFVQ----------------FSGSRSERRFIVQGKVIVAKNPCLHPGD 755
Query: 1306 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1127
VRVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGD+YFV WDP+LIP +Q+ PM
Sbjct: 756 VRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPM 815
Query: 1126 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELAK 947
+Y PA+ LDH+V IEE+EEYFTNY+VNDSLG+I+NAHT FAD+EP A S C ELAK
Sbjct: 816 DYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAK 875
Query: 946 LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 767
LFSIAVDFPKTGVPAEIP L VKE PDFMEKPDKP+Y+S VIGKLFR +K++AP
Sbjct: 876 LFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECS 935
Query: 766 IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 587
I+ TRE ++ YDPDMEV+GFEDYI+DA ++K +YD KLGNLMDYYG+KTE E+LSG I
Sbjct: 936 IKLLTREKMKRFYDPDMEVEGFEDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGI 995
Query: 586 LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 407
+KMS+SF+K+ DAE IS+AVRSL+KE R WFNEKGS+ D +I DDAYAKASAWY+VTYH
Sbjct: 996 MKMSRSFTKKRDAEVISMAVRSLRKEARSWFNEKGSELDEEI-DDAYAKASAWYYVTYHH 1054
Query: 406 NYWGIYNEGMKRAHFLSFPWIVYDKLIHIXXXXXXXXXXXXXASLQYSFGRSLRL 242
+YWG YNEGM R HFLSFPW VYDKLI I +SL++ F R L
Sbjct: 1055 SYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHCFQRGFHL 1109
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1455 bits (3766), Expect = 0.0
Identities = 732/1135 (64%), Positives = 873/1135 (76%), Gaps = 3/1135 (0%)
Frame = -2
Query: 3637 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3458
+TI++ GF + VSA +VK FLE + G E TV ALK+R K G RAF IVQFT S A
Sbjct: 3 KTIQVYGFLSDVSAGEVKTFLEGYTGRE-TVYALKIRQHKKSG---RAFAIVQFTRSSDA 58
Query: 3457 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3278
I A Q+L YYG +YL ++ E DI+PKPR L +E ++ C VS++KF LW
Sbjct: 59 GLIIRLANQRL-YYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117
Query: 3277 AADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3098
A +V +NFG G+RKL F LS+ +YKLELFYE+IWQI+LRCP ++ K LLIQ+ APR
Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177
Query: 3097 IYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2918
IY+K P+ + +FD P LNYF+D DDQW+R DFT CIGQSS LCL++P++ +LP+
Sbjct: 178 IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNF 237
Query: 2917 HENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2738
ENF YYKENEG+ +LE GSS+ L LVPIV P + I LP++ILFKVN LVQNG I GP
Sbjct: 238 RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297
Query: 2737 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2558
LDD F+ LV+PC + YI+HALE L L+E C+EP+RWL +Y ++ S + TI
Sbjct: 298 ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357
Query: 2557 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2378
SLD GLVY+ RVQ+TP+++YFCGPE+NVSNRVLR+F +DI+NF+RISFVDEE +K+ S +
Sbjct: 358 SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417
Query: 2377 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2198
+ R R TGIYKRILSTLR GIVIG K+FEFLAFSSSQLRENSAWMFASR LT
Sbjct: 418 VQARGR------RTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLT 471
Query: 2197 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIET--ESRKYNFS 2024
AADIR WMG+FS+I+NVAKYAARLGQSF SS ETL+V K EI +IPDIE + KY F
Sbjct: 472 AADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFP 531
Query: 2023 DGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1847
DGIGKISA FA++VA KC L TPSAFQIR GG+KGVVAIDP S +KLSLRKSM KY+S
Sbjct: 532 DGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYES 591
Query: 1846 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQEA 1667
EN KLDVL+WSKYQPC+LNRQLITLLSTLGV D+AFE+KQ+E VDQL+ +LTD + AQEA
Sbjct: 592 ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEA 651
Query: 1666 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1487
LE+MSPGEN +LKEMLLCGYKPDAEPFLSM L+TFRASKL ELRTK RIF+ KGRSMMG
Sbjct: 652 LELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMG 711
Query: 1486 CLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1307
CLDETRTL YGQVFV F G+R + ++ GKV VAKNPCLHPGD
Sbjct: 712 CLDETRTLNYGQVFVQ----------------FSGSRSERRFIVQGKVIVAKNPCLHPGD 755
Query: 1306 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1127
VRVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGD+YFV WDP+LIP +Q+ PM
Sbjct: 756 VRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPM 815
Query: 1126 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELAK 947
+Y PA+ LDH+V IEE+EEYFTNY+VNDSLG+I+NAHT FAD+EP A S C ELAK
Sbjct: 816 DYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAK 875
Query: 946 LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 767
LFSIAVDFPKTGVPAEIP L VKE PDFMEKPDKP+Y+S VIGKLFR +K++AP
Sbjct: 876 LFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECS 935
Query: 766 IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 587
I+ TRE ++ YDPDMEV+GF DYI+DA ++K +YD KLGNLMDYYG+KTE E+LSG I
Sbjct: 936 IKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGI 995
Query: 586 LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 407
+KMS+SF+K+ DAE+IS+AVRSL+KE R WFNEKGS+ D +I DDAYAKASAWY+VTYH
Sbjct: 996 MKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEI-DDAYAKASAWYYVTYHH 1054
Query: 406 NYWGIYNEGMKRAHFLSFPWIVYDKLIHIXXXXXXXXXXXXXASLQYSFGRSLRL 242
+YWG YNEGM R HFLSFPW VYDKLI I +SL++ F R L
Sbjct: 1055 SYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109
>ref|XP_012463738.1| PREDICTED: RNA-dependent RNA polymerase 1 [Gossypium raimondii]
gi|763812161|gb|KJB79013.1| hypothetical protein
B456_013G029000 [Gossypium raimondii]
Length = 1110
Score = 1451 bits (3757), Expect = 0.0
Identities = 729/1135 (64%), Positives = 875/1135 (77%), Gaps = 3/1135 (0%)
Frame = -2
Query: 3637 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3458
+TI++ GF + VSA +VK FLE + G E TV ALK+R K G RA+ IVQFT S A
Sbjct: 3 KTIQVYGFLSNVSAGEVKTFLEGYTGRE-TVYALKIRQHKKGG---RAYAIVQFTRSSAA 58
Query: 3457 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3278
E I A Q+L YYG +YL ++ E DI+PKPR+ L +E ++ GCQVS +KF LW
Sbjct: 59 ELIIRLANQRL-YYGRSYLKAREMETDIVPKPRAFLHTMERVTVNFGCQVSVEKFYVLWK 117
Query: 3277 AADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3098
A +V +NFG G+RKL F +S+ +YKLELFYE+IWQI+LRCP ++ K LLIQ+ APR
Sbjct: 118 AENVTLNFGTGMRKLEFLVSYCRSKYKLELFYENIWQIELRCPDSQTSKHLLIQLFGAPR 177
Query: 3097 IYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2918
IY+K + + +FD P LNYF+D DDQW+R DFT CIGQSS LCL++P++ +LP+
Sbjct: 178 IYEKEVRASELVFDDPLLNYFKDVPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLRLPNF 237
Query: 2917 HENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2738
ENF YYKENE + +LE GSS+ L LVPIV P + I LP++ILFKVN LVQNG I GP
Sbjct: 238 RENFAYYKENESRLVLESGSSYSCNLSLVPIVCPLRVIDLPFEILFKVNLLVQNGCIPGP 297
Query: 2737 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2558
LDD F+ LV+PC +D YI+HALE L L+E C+EP+RWL +Y ++ S + I
Sbjct: 298 ALDDTFYRLVDPCRMDKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPAI 357
Query: 2557 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2378
SLD GLVY+ RVQ+TP+++YFCGPE+NVSNRVLR+F +DI+NF+RISFVDEE +K+ S++
Sbjct: 358 SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSIN 417
Query: 2377 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2198
+ R R T IY+RILSTLR G++IG+K+FEFLAFSSSQLRENSAWMFASR LT
Sbjct: 418 VQARGR------RTSIYERILSTLRNGVLIGDKRFEFLAFSSSQLRENSAWMFASRKGLT 471
Query: 2197 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIET--ESRKYNFS 2024
AADIR WMG+FS+I+NVAKYAARLGQSF SS ETL+V K EI +IPDIE + KY FS
Sbjct: 472 AADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFS 531
Query: 2023 DGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1847
DGIGKISA FA++VA KC L TPSAFQIR GG+KGVVAIDP S +KLSLRKSM KY+S
Sbjct: 532 DGIGKISAKFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYES 591
Query: 1846 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQEA 1667
EN KLDVL+WSKYQPC+LNRQLITLLSTLGV D AFE+KQ+E ++QL+ +LTD + AQEA
Sbjct: 592 ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVIEQLNALLTDPLEAQEA 651
Query: 1666 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1487
LE+MSPGEN +LKEMLLCGYKPDAEPFLSM L+ FRASKL ELRTK RIF+ KGRSMMG
Sbjct: 652 LELMSPGENTNILKEMLLCGYKPDAEPFLSMMLEAFRASKLLELRTKARIFVQKGRSMMG 711
Query: 1486 CLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1307
CLDETRTL YGQVFV F G+R ++ ++ GKV VAKNPCLHPGD
Sbjct: 712 CLDETRTLNYGQVFVQ----------------FSGSRSEQRCIVQGKVIVAKNPCLHPGD 755
Query: 1306 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1127
VRVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WDP+LIP +Q+ PM
Sbjct: 756 VRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDIYFVCWDPELIPYKQMDPM 815
Query: 1126 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELAK 947
+Y PA ILDH+V IEE+EEYFTNY+VNDSLG+I+NAHT FAD+EP A C ELAK
Sbjct: 816 DYSPAPTTILDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMCHPCLELAK 875
Query: 946 LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 767
LFSIAVDFPKTGVPAEIP L VKE PDFMEKPDKP+Y+S VIGKLFR +K++AP
Sbjct: 876 LFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECS 935
Query: 766 IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 587
I+ TRE ++ YDPDMEV+GFEDYI+DA + K +YD KLGNLMDYYG+KTE E+LSG I
Sbjct: 936 IKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILSGGI 995
Query: 586 LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 407
LKMS+SF+K+ DAEAIS+AVRSL+KE R WFNE+ S+ D +I DDAYAKASAWY+VTYHP
Sbjct: 996 LKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEERSELDEEI-DDAYAKASAWYYVTYHP 1054
Query: 406 NYWGIYNEGMKRAHFLSFPWIVYDKLIHIXXXXXXXXXXXXXASLQYSFGRSLRL 242
+YWG YNEGM R HFLSFPW VYDKLI I +SL++ F R L L
Sbjct: 1055 SYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRRLHL 1109
>ref|XP_002281315.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Vitis vinifera]
gi|731369199|ref|XP_010650995.1| PREDICTED: probable
RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1109
Score = 1431 bits (3703), Expect = 0.0
Identities = 730/1109 (65%), Positives = 865/1109 (77%), Gaps = 3/1109 (0%)
Frame = -2
Query: 3637 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3458
+TI++ G P+ VSA+++K FLE + GE GT+ AL+++ PK+ + A V QFT+ R A
Sbjct: 3 KTIQVYGVPSNVSANEIKEFLEKYTGE-GTIEALEIKQPKSGVSMTHAKV--QFTSLRLA 59
Query: 3457 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3278
E I S A+Q L+YG YL ++ + DIIPKPR+ L +++ LH G Q+S+++F LW
Sbjct: 60 ELIISLAKQ--LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWK 117
Query: 3277 AADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3098
A +V V FGFGLRK FFLSH EYKLEL E+IWQIQLR PR ++ KFLLIQ+ AP+
Sbjct: 118 AINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQ 177
Query: 3097 IYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2918
IY+K D L+YF++T DDQW+R +DFTP C IGQSS LCL++P+ +LP+
Sbjct: 178 IYEK---------DVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNF 228
Query: 2917 HENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2738
ENF YKEN+ +FILE G+SF L LVPIV P Q LP+KILFK+N+LVQNG + GP
Sbjct: 229 CENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGP 288
Query: 2737 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2558
TLD FF V+P I+ +IEHALE L L+E C+EP RWL QY Y +S + I
Sbjct: 289 TLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTY-ISKQVAGSPAI 347
Query: 2557 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2378
SLD+GLVY+ RVQ+TP K+YFCGPEVNVSNRVLR + +DI+NF+R+SF+DE +K+ S
Sbjct: 348 SLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTV 407
Query: 2377 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2198
+ PR S++G + TG+Y+RILS L+ GIVIG+KKF+FLA SSSQLR+NSAWMFASR LT
Sbjct: 408 ISPRM-SNEGRR-TGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLT 465
Query: 2197 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIET--ESRKYNFS 2024
AADIR MGDFS+I+NVAKYAARLGQSF SSKETL V KHEIEIIPDIET + Y FS
Sbjct: 466 AADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFS 525
Query: 2023 DGIGKISANFARRVALKCDL-SSTPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1847
DGIGKISA A RVA+KC +STPSAFQIRYGGYKGVVA+DP S KLSLRKSM KY+S
Sbjct: 526 DGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYES 585
Query: 1846 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQEA 1667
EN LDVLSWSKY+PC+LNRQLITLLSTLGVKDH FE+KQ+EAVDQLD +L D +RAQEA
Sbjct: 586 ENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEA 645
Query: 1666 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1487
LE+MSPGEN +LKEML+CGYKPDAEPFLSM LQTFRA+KL ELRTKTRIF+P GRSMMG
Sbjct: 646 LELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMG 705
Query: 1486 CLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1307
CLDETRTLEYG+VFV IS G +Q F D L + ++ +L GKV VAKNPCLHPGD
Sbjct: 706 CLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGD 765
Query: 1306 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1127
VR+L AV+VPALHHMVDCV+FPQKG RPHP+ECSGSDLDGDIYFV WD DLIP RQ+ PM
Sbjct: 766 VRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPM 825
Query: 1126 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELAK 947
+Y PA ++LDHDV IEEVEEYFTNY+ ND LG+IANAHTVFADKE A C ELAK
Sbjct: 826 DYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAK 885
Query: 946 LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 767
LFSIA++FPKTGVPAEIP HLHVKE PDFMEK +KP YES+ VIGKLFR +KD+AP
Sbjct: 886 LFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYD 945
Query: 766 IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 587
++SFTR+VA +SYD DMEVDGFEDY+ DA ++K QYD KLG+LMD GI+TE E+LSGSI
Sbjct: 946 VRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSI 1005
Query: 586 LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 407
+KMSKSF KR DAEAI+LAVRSL+KE R WFN+ GS T DD YA ASAWYHVTYHP
Sbjct: 1006 MKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGA-DDVYAIASAWYHVTYHP 1064
Query: 406 NYWGIYNEGMKRAHFLSFPWIVYDKLIHI 320
YWG YNEGM HFLSFPW VYDKLI I
Sbjct: 1065 YYWGCYNEGMYHDHFLSFPWCVYDKLIQI 1093
>ref|XP_011075687.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Sesamum indicum]
gi|747058682|ref|XP_011075688.1| PREDICTED: probable
RNA-dependent RNA polymerase 1 [Sesamum indicum]
gi|747058684|ref|XP_011075689.1| PREDICTED: probable
RNA-dependent RNA polymerase 1 [Sesamum indicum]
Length = 1115
Score = 1428 bits (3696), Expect = 0.0
Identities = 726/1134 (64%), Positives = 866/1134 (76%), Gaps = 3/1134 (0%)
Frame = -2
Query: 3637 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3458
+TI++ GFP ++AD VK FLE G+ GT++AL+V+P K GPR A+ VQFT SR+A
Sbjct: 3 KTIQVYGFPYLIAADVVKNFLEQQTGQ-GTIVALEVKPSKK-GPR--AYAKVQFTHSRYA 58
Query: 3457 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3278
E I + A +L YYG +YL V + + DI+ PR+ + +E L+ GCQ S +KFS LW
Sbjct: 59 EMIQNLASTRL-YYGTSYLRVWESDSDIVHNPRTYVHEMEQVTLNFGCQTSREKFSVLWK 117
Query: 3277 AADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3098
A V V FG G++K+ F L H+ +EYKL+L YE+IWQI L P ++ K LLIQ+ APR
Sbjct: 118 VASVSVKFGTGMKKMHFLLCHNSVEYKLQLSYENIWQIVLYHPHGQTAKLLLIQLFGAPR 177
Query: 3097 IYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2918
IYKK + S +YF +TQDDQWIR DFTP CIGQ+S LCL++PY +LP+
Sbjct: 178 IYKKVSES--------IYSYFSETQDDQWIRTTDFTP-SCIGQASGLCLELPYGMRLPNF 228
Query: 2917 HENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2738
++F+YY ++E F LE G+ F LDLVPI+ P + LPY+ILFKV SLVQ G + GP
Sbjct: 229 QDHFVYYSKSENPFHLERGAPFSHNLDLVPILHPPRGFELPYRILFKVCSLVQTGCLPGP 288
Query: 2737 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2558
LD FF LVNP I+ Y+EHALE L LKE C++P WL QY KY + +P I
Sbjct: 289 KLDARFFQLVNPQRINTKYVEHALEKLYYLKECCYDPTTWLMEQYEKYRTAKEQPTSPVI 348
Query: 2557 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2378
SL GLVY+HRVQVTPTK+YF GPEVNVSNRVLR +SD I+NF+R+SFVDEEWDKM S D
Sbjct: 349 SLGDGLVYVHRVQVTPTKVYFSGPEVNVSNRVLRHYSDYIDNFLRVSFVDEEWDKMYSTD 408
Query: 2377 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2198
L PR S+D T +Y+RIL TLR GI IG K FEFLAFSSSQLR+NS WMFA + L
Sbjct: 409 LSPRVASADENGKTKLYERILKTLREGIRIGNKNFEFLAFSSSQLRDNSLWMFAPTNNLN 468
Query: 2197 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIETE--SRKYNFS 2024
A IR+WMGDF I+NVAKYAARLGQSFGSS ETL+V +HEIE IPDIE KY FS
Sbjct: 469 AHYIRQWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGQHEIERIPDIEAVRGGTKYIFS 528
Query: 2023 DGIGKISANFARRVALKCDL-SSTPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1847
DGIGKISA FARRVA++C + +STPSAFQIRYGGYKGVVA+DP S KLSLR SM KY+S
Sbjct: 529 DGIGKISAEFARRVAVRCGVKNSTPSAFQIRYGGYKGVVAVDPTSSVKLSLRSSMLKYQS 588
Query: 1846 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQEA 1667
EN KLDVL+WSKYQPC+LNRQ+ITLLSTLGVKDHAFERKQ+EAV QLD +L D +RAQEA
Sbjct: 589 ENTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHAFERKQREAVAQLDDILVDPLRAQEA 648
Query: 1666 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1487
L++M+PGEN +LKEML CGYKPD EPFLSM LQTFRASKL +LR K RIF+P+GR MMG
Sbjct: 649 LDLMAPGENTNILKEMLKCGYKPDGEPFLSMMLQTFRASKLLDLRLKARIFVPQGRQMMG 708
Query: 1486 CLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1307
CLDET TLEYG+VFV S A R+QF ++ + MF + + ++ GKV VAKNPCLHPGD
Sbjct: 709 CLDETGTLEYGEVFVQFSGALRRQFNEESI-MFNDYMSEYNYIVKGKVVVAKNPCLHPGD 767
Query: 1306 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1127
VRVL+AV+V ALHHMVDCV+FP+KG RPHPNECSGSDLDGDIYFV WDPDLIP RQV PM
Sbjct: 768 VRVLKAVDVEALHHMVDCVVFPKKGMRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVSPM 827
Query: 1126 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELAK 947
+Y PA LDHDV IEEVEEYFTNY+VNDSLG+I+NAHTVFADKE MA S+SC ELA+
Sbjct: 828 DYDPAPTTGLDHDVTIEEVEEYFTNYIVNDSLGIISNAHTVFADKEESMALSESCLELAR 887
Query: 946 LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 767
LFSIAVDFPKTGVPAEIPSHL VKE PDFM+KPDK YESKRVIGKL+R +KD+AP T
Sbjct: 888 LFSIAVDFPKTGVPAEIPSHLRVKEYPDFMDKPDKTAYESKRVIGKLYREVKDIAPHTTS 947
Query: 766 IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 587
+SFT+EVAR+SYDPDMEVDGF+DYI++A +K +YD KLGNLM+YYGIKTE E+LSG I
Sbjct: 948 SKSFTKEVARRSYDPDMEVDGFKDYIDEAFDYKTEYDYKLGNLMEYYGIKTEAEILSGGI 1007
Query: 586 LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 407
+K SK+F +R DAEAI +AVRSL+ E R WF +KGS++ DD YAKASAWYHVTYHP
Sbjct: 1008 MKTSKTFDRRKDAEAIGVAVRSLRNEARSWF-KKGSES-----DDPYAKASAWYHVTYHP 1061
Query: 406 NYWGIYNEGMKRAHFLSFPWIVYDKLIHIXXXXXXXXXXXXXASLQYSFGRSLR 245
++WG YNEG+KR H++SFPW VYDKLI I +SL++ G LR
Sbjct: 1062 DFWGSYNEGLKRDHYISFPWCVYDKLIKI--KEDNSRRAPGISSLEWQLGNRLR 1113
>ref|XP_010093320.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
gi|587864166|gb|EXB53859.1| RNA-dependent RNA polymerase
1 [Morus notabilis]
Length = 1133
Score = 1425 bits (3689), Expect = 0.0
Identities = 716/1136 (63%), Positives = 873/1136 (76%), Gaps = 4/1136 (0%)
Frame = -2
Query: 3637 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3458
+TI++ GFP+ VSA+ VK FLE H G GTV A+K+RP KN G SR++ IVQF T A
Sbjct: 3 KTIQLSGFPSHVSAESVKEFLEGHTGR-GTVYAIKIRPTKNGG--SRSYAIVQFMTVETA 59
Query: 3457 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3278
E I A +L +YG +YL + ERDI+PKPR+TL +L++ LH GCQ+S +KFS LW
Sbjct: 60 ELIIRLANPRL-WYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWR 118
Query: 3277 AADVEVNFGFGLRKLSFFLSHHGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3098
+V V+FG GLR+L+F+L++ +EY+L+L YE++WQI+L PR ++ K+LLIQ+ APR
Sbjct: 119 VGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPR 178
Query: 3097 IYKKAAPSYDNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2918
+Y+K +I ++P NYF+DT DDQW+RA DFT CCIG SS L L++PY LPD+
Sbjct: 179 VYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDL 238
Query: 2917 HENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2738
ENF+YYKE+E +FILE GSSF R LDLVPIV P I LP++ +FK+N L+QNG + GP
Sbjct: 239 RENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGP 298
Query: 2737 TLDDEFFNLVNPCSIDN-DYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLST 2561
TLD +F+ LV+P I N D I +ALE L NLKE +EPA WL QY KY + R P+
Sbjct: 299 TLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPA 358
Query: 2560 ISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSM 2381
I+LDSGLVY+ RVQVTP+K+YFCGPE+NVSNRVLRE+ D I+ F+R+SFVDEE +K+ S
Sbjct: 359 IALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFST 418
Query: 2380 DLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSEL 2201
DL PR +++ ++ TGIY+RILS LR GI IG++KFEFLAFSSSQLR+NS WMFA+
Sbjct: 419 DLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGH 478
Query: 2200 TAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIEIIPDIETE--SRKYNF 2027
+A IR+W+GDF I+NVAKYAARLGQSFGSS ETLTV + E E+I DIE E + KY F
Sbjct: 479 SADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVF 538
Query: 2026 SDGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYK 1850
SDGIGKIS+ FA+RVA KC L PSAFQIRY GYKGVVA+DP S KLSLRKSM KY+
Sbjct: 539 SDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYE 598
Query: 1849 SENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDHAFERKQQEAVDQLDMMLTDSIRAQE 1670
SE KLDVL++SK Q CYLNRQLITLLSTLGV D FE+KQ+EAV QL+ +L D +RA+E
Sbjct: 599 SELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRARE 658
Query: 1669 ALEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMM 1490
AL++MS GE +LKE+L CGY+P+AEPFLSM LQ FRASKL ELRTKTRI IP GR+MM
Sbjct: 659 ALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMM 718
Query: 1489 GCLDETRTLEYGQVFVNISFAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPG 1310
GCLDE RTLEYG+VFV S + FF+D M G ++ ++VG+V VAKNPCLHPG
Sbjct: 719 GCLDEMRTLEYGEVFVQFSGITHRPFFEDSF-MLGGTGSGQNYIVVGRVVVAKNPCLHPG 777
Query: 1309 DVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPP 1130
DVRVL+AVNVPALHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WD +LIP +Q P
Sbjct: 778 DVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEP 837
Query: 1129 MEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDSCTELA 950
M+Y PA LDHDVRIEEV+EYFTNY+VNDSLG+IANAHT FADKEP A S SC ELA
Sbjct: 838 MDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELA 897
Query: 949 KLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTG 770
+LFSIAVDFPKTGVPA IP L+VKE PDFMEK +KP YES+ VIGKLFR +KD+AP G
Sbjct: 898 RLFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVG 957
Query: 769 HIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGS 590
+ FT+EVA +SYDPDME DGFEDYI+DA ++K YD KLGNL+DYYGIK+E E++ GS
Sbjct: 958 SLHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGS 1017
Query: 589 ILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYH 410
I++MSKSF+KR DAE+I++AVR+L+KE R WFNEKGS D DD YAKASAWY+VTYH
Sbjct: 1018 IMRMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLD-SAADDVYAKASAWYYVTYH 1076
Query: 409 PNYWGIYNEGMKRAHFLSFPWIVYDKLIHIXXXXXXXXXXXXXASLQYSFGRSLRL 242
+YWG YNEGM R H+LSFPW VYDKL+ I +SL+ +F R L L
Sbjct: 1077 HSYWGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLHL 1132