BLASTX nr result
ID: Cinnamomum24_contig00007909
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum24_contig00007909
(4399 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010242918.1| PREDICTED: DNA-directed RNA polymerase II su... 2264 0.0
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 2254 0.0
ref|XP_010920288.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 2227 0.0
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 2222 0.0
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta... 2221 0.0
ref|XP_006859038.1| PREDICTED: DNA-directed RNA polymerase II su... 2219 0.0
ref|XP_012091599.1| PREDICTED: DNA-directed RNA polymerase II su... 2216 0.0
ref|XP_007025631.1| DNA-directed RNA polymerase family protein i... 2216 0.0
ref|XP_010108197.1| DNA-directed RNA polymerase II subunit [Moru... 2215 0.0
ref|XP_008801262.1| PREDICTED: DNA-directed RNA polymerase II su... 2215 0.0
ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II su... 2214 0.0
ref|XP_009605280.1| PREDICTED: DNA-directed RNA polymerase II su... 2212 0.0
ref|XP_011027835.1| PREDICTED: DNA-directed RNA polymerase II su... 2211 0.0
ref|XP_009765275.1| PREDICTED: DNA-directed RNA polymerase II su... 2210 0.0
ref|XP_011096303.1| PREDICTED: DNA-directed RNA polymerase II su... 2207 0.0
gb|AES59623.2| DNA-directed RNA polymerase subunit beta [Medicag... 2207 0.0
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ... 2207 0.0
ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II su... 2205 0.0
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su... 2204 0.0
ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citr... 2204 0.0
>ref|XP_010242918.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nelumbo
nucifera]
Length = 1189
Score = 2264 bits (5868), Expect = 0.0
Identities = 1127/1190 (94%), Positives = 1151/1190 (96%), Gaps = 4/1190 (0%)
Frame = -2
Query: 4176 MYGGEEYDPA--DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 4003
MYGG+EYDP+ DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA
Sbjct: 1 MYGGDEYDPSMNDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 60
Query: 4002 DIEIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 3823
DIEIRPESQHNPGRQSDF ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS
Sbjct: 61 DIEIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 120
Query: 3822 APLYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 3643
APLYVDVTKR+IKKGHDCEEVTETQ+F KVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC
Sbjct: 121 APLYVDVTKRVIKKGHDCEEVTETQEFAKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 180
Query: 3642 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMF 3463
PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPSSMF
Sbjct: 181 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMF 240
Query: 3462 VRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMM 3283
VRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMM
Sbjct: 241 VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMM 300
Query: 3282 ELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CE 3106
ELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG+ CE
Sbjct: 301 ELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCE 360
Query: 3105 TKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 2926
TKKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY
Sbjct: 361 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 420
Query: 2925 VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTL 2746
VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTL
Sbjct: 421 VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTL 480
Query: 2745 SHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAH 2566
SHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+
Sbjct: 481 SHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAN 540
Query: 2565 PILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTE 2386
PILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNP+ VDVNTE
Sbjct: 541 PILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTE 600
Query: 2385 VGVIRDIRLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAK 2209
VGVIRDIRL+ELRLYTDYGRCSRPLFIVEK+RLLIKKKDI+ALQQRE+ EE GWHDLVAK
Sbjct: 601 VGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESSEEGGWHDLVAK 660
Query: 2208 GFIEYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPD 2029
GFIEYVD +DLV ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPD
Sbjct: 661 GFIEYVDTEEEETTMISMTINDLVTARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPD 720
Query: 2028 HNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 1849
HNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG
Sbjct: 721 HNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 780
Query: 1848 INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRE 1669
INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+RE
Sbjct: 781 INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPSRE 840
Query: 1668 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSL 1489
NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QD++ QGQ+SRYTRRDHSTSL
Sbjct: 841 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDS-QGQSSRYTRRDHSTSL 899
Query: 1488 RHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 1309
RHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW
Sbjct: 900 RHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 959
Query: 1308 TLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHR 1129
T+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+
Sbjct: 960 TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1019
Query: 1128 CGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 949
CGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG
Sbjct: 1020 CGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1079
Query: 948 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFEC 769
RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFEC
Sbjct: 1080 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFEC 1139
Query: 768 RGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
RGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKP KDQKKKGA
Sbjct: 1140 RGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPSKDQKKKGA 1189
>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera] gi|147841183|emb|CAN72948.1| hypothetical
protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product
[Vitis vinifera]
Length = 1193
Score = 2254 bits (5840), Expect = 0.0
Identities = 1122/1194 (93%), Positives = 1149/1194 (96%), Gaps = 8/1194 (0%)
Frame = -2
Query: 4176 MYGGEEYDPA------DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 4015
MYG +EYDP D+DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1 MYGEDEYDPTVVEEEEDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 60
Query: 4014 DESADIEIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 3835
DESADIEIRPESQHNPGRQSDF ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN
Sbjct: 61 DESADIEIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 120
Query: 3834 LTYSAPLYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 3655
LTYSAPLYVDVTKRIIKKGHD EEVTETQ+FTKVFIGKVPIMLRSSYCT+YQNSEKDLTE
Sbjct: 121 LTYSAPLYVDVTKRIIKKGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTE 180
Query: 3654 LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPP 3475
LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPP
Sbjct: 181 LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPP 240
Query: 3474 SSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD 3295
SSMFVRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD
Sbjct: 241 SSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD 300
Query: 3294 TQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG 3115
TQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG
Sbjct: 301 TQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG 360
Query: 3114 D-CETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 2938
+ CETKKAYYFGYIIHRLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD
Sbjct: 361 EYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 420
Query: 2937 VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 2758
VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY
Sbjct: 421 VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 480
Query: 2757 ASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVG 2578
ASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVG
Sbjct: 481 ASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVG 540
Query: 2577 SAAHPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVD 2398
SAA+PILEFLEEWSTENFEEISPAVIPQ+TKIFVNGCWVGIHRNPD VD
Sbjct: 541 SAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVD 600
Query: 2397 VNTEVGVIRDIRLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHD 2221
VNTEVGVIRDIRL+ELRLYTDYGRCSRPLFIVEK+RLLIKK+DI+ALQ RE+ E+ GWHD
Sbjct: 601 VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHD 660
Query: 2220 LVAKGFIEYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASII 2041
LV+KGFIEYVD +DL++ARLNP++AYSETYTHCEIHPSLILGVCASII
Sbjct: 661 LVSKGFIEYVDTEEEETTMISMTINDLISARLNPEEAYSETYTHCEIHPSLILGVCASII 720
Query: 2040 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 1861
PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
Sbjct: 721 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 780
Query: 1860 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 1681
LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR
Sbjct: 781 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 840
Query: 1680 PNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDH 1501
PNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QD++ QGQ SRYTRRDH
Sbjct: 841 PNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDS-QGQASRYTRRDH 899
Query: 1500 STSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 1321
STSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
Sbjct: 900 STSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 959
Query: 1320 DMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1141
DMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK
Sbjct: 960 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1019
Query: 1140 ALHRCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 961
ALH+CGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
Sbjct: 1020 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1079
Query: 960 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 781
PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN
Sbjct: 1080 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 1139
Query: 780 SFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
SFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTKEVKP KDQKKKGA
Sbjct: 1140 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEVKPPKDQKKKGA 1193
>ref|XP_010920288.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Elaeis guineensis]
Length = 1187
Score = 2227 bits (5772), Expect = 0.0
Identities = 1100/1177 (93%), Positives = 1134/1177 (96%), Gaps = 1/1177 (0%)
Frame = -2
Query: 4146 DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 3967
+EDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA+IEIRPESQHNP
Sbjct: 12 EEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESANIEIRPESQHNP 71
Query: 3966 GRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRII 3787
GRQSDF ETIYKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK++I
Sbjct: 72 GRQSDFVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKVI 131
Query: 3786 KKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 3607
KKGHDCEEVTETQ+F KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING
Sbjct: 132 KKGHDCEEVTETQEFPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 191
Query: 3606 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSRASAKGG 3427
SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+Q+RP S+MFVRMLSR SAKGG
Sbjct: 192 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMPESQSRPASTMFVRMLSRTSAKGG 251
Query: 3426 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 3247
SSGQYIRATLPYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV
Sbjct: 252 SSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 311
Query: 3246 IQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYYFGYIIH 3070
IQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAYYFGYIIH
Sbjct: 312 IQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIH 371
Query: 3069 RLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 2890
RLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVN
Sbjct: 372 RLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVN 431
Query: 2889 LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 2710
LQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR
Sbjct: 432 LQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 491
Query: 2709 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTE 2530
EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEW TE
Sbjct: 492 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWGTE 551
Query: 2529 NFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRDIRLREL 2350
NFEEISPAVIPQA+KIFVNG WVGIHRNPD +DVNTEVGV+RDIRL+EL
Sbjct: 552 NFEEISPAVIPQASKIFVNGSWVGIHRNPDLLVRTLRRLRRQIDVNTEVGVVRDIRLKEL 611
Query: 2349 RLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEEGWHDLVAKGFIEYVDXXXXXX 2170
RLYTDYGRCSRPLFIVE +RLLIKKKDIQALQQRE+ EEGWHDLVAKGFIEY+D
Sbjct: 612 RLYTDYGRCSRPLFIVENQRLLIKKKDIQALQQRESPEEGWHDLVAKGFIEYIDTEEEET 671
Query: 2169 XXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 1990
+DLVNAR NP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM
Sbjct: 672 TMIAMTINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 731
Query: 1989 GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 1810
GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY
Sbjct: 732 GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 791
Query: 1809 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKL 1630
NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKL
Sbjct: 792 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKL 851
Query: 1629 DDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESGMVDQVLL 1450
DDDGLAPPGTRVSGEDVIIGKT+PI QD++ QGQ SRYTRRDHSTS+RHSESGMVDQVLL
Sbjct: 852 DDDGLAPPGTRVSGEDVIIGKTSPIPQDDS-QGQASRYTRRDHSTSVRHSESGMVDQVLL 910
Query: 1449 TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNP 1270
TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNP
Sbjct: 911 TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 970
Query: 1269 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRGFETMYN 1090
HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRGFETMYN
Sbjct: 971 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1030
Query: 1089 GHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 910
GHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME
Sbjct: 1031 GHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1090
Query: 909 RDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVH 730
RDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVH
Sbjct: 1091 RDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVH 1150
Query: 729 IPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
IPYACKLLFQELM+MAIAPRM TKE+KP KDQKKKGA
Sbjct: 1151 IPYACKLLFQELMAMAIAPRMFTKEMKPAKDQKKKGA 1187
>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1191
Score = 2222 bits (5758), Expect = 0.0
Identities = 1102/1186 (92%), Positives = 1137/1186 (95%), Gaps = 4/1186 (0%)
Frame = -2
Query: 4164 EEYDPA--DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 3991
EEYDP DE+EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI
Sbjct: 7 EEYDPTMEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 66
Query: 3990 RPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 3811
RPESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY
Sbjct: 67 RPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 126
Query: 3810 VDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ 3631
VDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ
Sbjct: 127 VDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ 186
Query: 3630 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRML 3451
GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+MFVRML
Sbjct: 187 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML 246
Query: 3450 SRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLR 3271
SR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLR
Sbjct: 247 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLR 306
Query: 3270 PSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKA 3094
PSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVG+ CETKKA
Sbjct: 307 PSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKA 366
Query: 3093 YYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC 2914
YYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKC
Sbjct: 367 YYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKC 426
Query: 2913 VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR 2734
VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR
Sbjct: 427 VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR 486
Query: 2733 RLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILE 2554
RLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILE
Sbjct: 487 RLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILE 546
Query: 2553 FLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVI 2374
FLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PD VDVNTEVGV+
Sbjct: 547 FLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVV 606
Query: 2373 RDIRLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIE 2197
RDIRL+ELR+YTDYGRCSRPLFIVEK+RLLIK+KDIQALQQRET E+ GWHDLVAKGFIE
Sbjct: 607 RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIE 666
Query: 2196 YVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQS 2017
Y+D +DLV+ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQS
Sbjct: 667 YIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQS 726
Query: 2016 PRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 1837
PRNTYQSAMGKQAMGIYVTNYQ RMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI
Sbjct: 727 PRNTYQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 786
Query: 1836 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMG 1657
VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMG
Sbjct: 787 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMG 846
Query: 1656 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSE 1477
MRHGSYDKLDDDGLAPPGTRVSGEDV+IGKTTPI QDE QG +RYTRRDHSTSLRHSE
Sbjct: 847 MRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEA-QGPAARYTRRDHSTSLRHSE 905
Query: 1476 SGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEG 1297
+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EG
Sbjct: 906 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEG 965
Query: 1296 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQ 1117
ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQ
Sbjct: 966 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1025
Query: 1116 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 937
MRGFETMYNGHTGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1026 MRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1085
Query: 936 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 757
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCK
Sbjct: 1086 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCK 1145
Query: 756 NKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
NKTDIVQVHIPYACKLLFQELMSMAIAPRMLTK+VK KD+KKK A
Sbjct: 1146 NKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDVKQAKDKKKKQA 1191
>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 1194
Score = 2221 bits (5755), Expect = 0.0
Identities = 1102/1184 (93%), Positives = 1136/1184 (95%), Gaps = 2/1184 (0%)
Frame = -2
Query: 4164 EEYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 3985
E+Y+ DEDE ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP
Sbjct: 13 EDYEDEDEDE-ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 71
Query: 3984 ESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 3805
ESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD
Sbjct: 72 ESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 131
Query: 3804 VTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 3625
VTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG
Sbjct: 132 VTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 191
Query: 3624 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSR 3445
YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+MFVRMLSR
Sbjct: 192 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR 251
Query: 3444 ASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPS 3265
SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPS
Sbjct: 252 TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPS 311
Query: 3264 LEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYY 3088
LEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVG+ CETKKAYY
Sbjct: 312 LEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYY 371
Query: 3087 FGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 2908
FGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVD
Sbjct: 372 FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD 431
Query: 2907 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 2728
NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL
Sbjct: 432 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 491
Query: 2727 NSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFL 2548
NSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFL
Sbjct: 492 NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 551
Query: 2547 EEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRD 2368
EEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PD VDVNTEVGV+RD
Sbjct: 552 EEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRD 611
Query: 2367 IRLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEYV 2191
IRL+ELR+YTDYGRCSRPLFIVEK+RLLIKKKDI ALQQRE+ EE GWHDLVAKGFIEY+
Sbjct: 612 IRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYI 671
Query: 2190 DXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 2011
D DLV AR+NP++AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPR
Sbjct: 672 DTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
Query: 2010 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 1831
NTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA
Sbjct: 732 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
Query: 1830 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMR 1651
IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMR
Sbjct: 792 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMR 851
Query: 1650 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESG 1471
HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI Q+E QGQ++RYTRRDHS SLRHSE+G
Sbjct: 852 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEA-QGQSARYTRRDHSISLRHSETG 910
Query: 1470 MVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGIT 1291
+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGIT
Sbjct: 911 IVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
Query: 1290 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMR 1111
PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMR
Sbjct: 971 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
Query: 1110 GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 931
GFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG
Sbjct: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1090
Query: 930 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 751
LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK
Sbjct: 1091 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 1150
Query: 750 TDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
TDIVQVHIPYACKLLFQELM+MAIAPRMLTK+VKP KDQKKKGA
Sbjct: 1151 TDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKPTKDQKKKGA 1194
>ref|XP_006859038.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amborella
trichopoda] gi|548863150|gb|ERN20505.1| hypothetical
protein AMTR_s00068p00181410 [Amborella trichopoda]
Length = 1190
Score = 2219 bits (5751), Expect = 0.0
Identities = 1100/1187 (92%), Positives = 1136/1187 (95%), Gaps = 1/1187 (0%)
Frame = -2
Query: 4176 MYGGEEYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 3997
M GGE+ D +EDEEITQEDAWAVISAYF+EKGLVRQQLDSFDEFIQNTMQEIVDESADI
Sbjct: 1 MSGGEDDDYVNEDEEITQEDAWAVISAYFDEKGLVRQQLDSFDEFIQNTMQEIVDESADI 60
Query: 3996 EIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 3817
EIRPESQHNPGRQ+DF ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP
Sbjct: 61 EIRPESQHNPGRQADFVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 120
Query: 3816 LYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY 3637
LYVDVTKR+IKKGHD EE+ E Q+ TKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPY
Sbjct: 121 LYVDVTKRVIKKGHDHEELAEQQELTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPY 180
Query: 3636 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVR 3457
DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QN+PPSSMFVR
Sbjct: 181 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNKPPSSMFVR 240
Query: 3456 MLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMEL 3277
MLSR S+KGGSSGQYIRATLPYIR EIPIIIVFRALGFVADKDILEHICYDFSDTQMMEL
Sbjct: 241 MLSRTSSKGGSSGQYIRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQMMEL 300
Query: 3276 LRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETK 3100
LRPSLEEAFVIQNQQVALDYIGKRGSTVGVT+EKRIKYAKEILQKEMLPHVGVG+ CETK
Sbjct: 301 LRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETK 360
Query: 3099 KAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2920
KAYYFGYIIHRLL+CA+GRRPEDDRDHYGNKRLDLAGPLLG LFR +FRKLTRDVR+YVQ
Sbjct: 361 KAYYFGYIIHRLLVCALGRRPEDDRDHYGNKRLDLAGPLLGSLFRTMFRKLTRDVRSYVQ 420
Query: 2919 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2740
KCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT+ASTLSH
Sbjct: 421 KCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSH 480
Query: 2739 LRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPI 2560
LRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PI
Sbjct: 481 LRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPI 540
Query: 2559 LEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVG 2380
LEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNP+ VDVNTEVG
Sbjct: 541 LEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVG 600
Query: 2379 VIRDIRLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEEGWHDLVAKGFI 2200
VIRDIRL+ELRLYTDYGRCSRPLFIVEK+RLLIKK DI+ALQQRE+ +EGWHDLVAKGFI
Sbjct: 601 VIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQRESPDEGWHDLVAKGFI 660
Query: 2199 EYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 2020
EYVD SDLV+ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 661 EYVDTEEEETTMISMTISDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 720
Query: 2019 SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 1840
SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 721 SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 780
Query: 1839 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 1660
IVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM
Sbjct: 781 IVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 840
Query: 1659 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHS 1480
GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI Q+E QGQ SRYTRRDHSTSLRHS
Sbjct: 841 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITQEE-MQGQASRYTRRDHSTSLRHS 899
Query: 1479 ESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLE 1300
ESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+E
Sbjct: 900 ESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 959
Query: 1299 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGY 1120
GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGY
Sbjct: 960 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1019
Query: 1119 QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 940
QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1020 QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1079
Query: 939 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 760
DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGC
Sbjct: 1080 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEQCGLIAIANLKKNSFECRGC 1139
Query: 759 KNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
KNKTDI+QVHIPYACKLLFQELM+MAIAPRM TKE K KD KKKGA
Sbjct: 1140 KNKTDIIQVHIPYACKLLFQELMAMAIAPRMFTKEEKKPKDHKKKGA 1186
>ref|XP_012091599.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha
curcas]
Length = 1193
Score = 2216 bits (5741), Expect = 0.0
Identities = 1097/1178 (93%), Positives = 1131/1178 (96%), Gaps = 2/1178 (0%)
Frame = -2
Query: 4146 DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 3967
D +EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP
Sbjct: 17 DGEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 76
Query: 3966 GRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRII 3787
G Q DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR+I
Sbjct: 77 GHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 136
Query: 3786 KKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 3607
KKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING
Sbjct: 137 KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 196
Query: 3606 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSRASAKGG 3427
SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPSSMFVRMLSR SAKGG
Sbjct: 197 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGG 256
Query: 3426 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 3247
SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV
Sbjct: 257 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 316
Query: 3246 IQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYYFGYIIH 3070
IQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAYYFGYIIH
Sbjct: 317 IQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIH 376
Query: 3069 RLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 2890
RLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT+DVR+YVQKCVDNGKDVN
Sbjct: 377 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRSYVQKCVDNGKDVN 436
Query: 2889 LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 2710
LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR
Sbjct: 437 LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 496
Query: 2709 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTE 2530
EGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TE
Sbjct: 497 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 556
Query: 2529 NFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRDIRLREL 2350
NFEEISPAVIPQATKIFVNGCWVGIHR+PD VDVNTEVGV+RDIRL+EL
Sbjct: 557 NFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 616
Query: 2349 RLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEYVDXXXXX 2173
R+YTDYGRCSRPLFIVEK+RLLIKKKDI ALQQRE+ EE GWHDLVAKGFIEY+D
Sbjct: 617 RIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEE 676
Query: 2172 XXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 1993
DLV AR+NP++AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 677 TTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 736
Query: 1992 MGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 1813
MGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG
Sbjct: 737 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 796
Query: 1812 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDK 1633
YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDK
Sbjct: 797 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDK 856
Query: 1632 LDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESGMVDQVL 1453
LDDDGLAPPGTRVSGEDVIIGKTTPI Q+E QGQ++RYTRRDHS SLRHSE+G+VDQVL
Sbjct: 857 LDDDGLAPPGTRVSGEDVIIGKTTPIAQEEA-QGQSARYTRRDHSISLRHSETGIVDQVL 915
Query: 1452 LTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVN 1273
LTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVN
Sbjct: 916 LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 975
Query: 1272 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRGFETMY 1093
PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRGFETMY
Sbjct: 976 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1035
Query: 1092 NGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 913
NGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM
Sbjct: 1036 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1095
Query: 912 ERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQV 733
ERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQV
Sbjct: 1096 ERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQV 1155
Query: 732 HIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
HIPYACKLLFQELM+MAIAPRMLTK++KP+KD KKKGA
Sbjct: 1156 HIPYACKLLFQELMAMAIAPRMLTKDIKPVKDHKKKGA 1193
>ref|XP_007025631.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
cacao] gi|508780997|gb|EOY28253.1| DNA-directed RNA
polymerase family protein isoform 1 [Theobroma cacao]
Length = 1189
Score = 2216 bits (5741), Expect = 0.0
Identities = 1104/1192 (92%), Positives = 1136/1192 (95%), Gaps = 6/1192 (0%)
Frame = -2
Query: 4176 MYGGEEYDPA----DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 4009
M EYDP ++DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
Sbjct: 1 MEDDSEYDPQLMDDEDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 60
Query: 4008 SADIEIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 3829
SADIEIRPESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT
Sbjct: 61 SADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 120
Query: 3828 YSAPLYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 3649
YSAPLYVDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
Sbjct: 121 YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 180
Query: 3648 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSS 3469
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+
Sbjct: 181 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 240
Query: 3468 MFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ 3289
MFVRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ
Sbjct: 241 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ 300
Query: 3288 MMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD- 3112
MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVGD
Sbjct: 301 MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGDF 360
Query: 3111 CETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 2932
CETKKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
Sbjct: 361 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 420
Query: 2931 AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 2752
+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
Sbjct: 421 SYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 480
Query: 2751 TLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSA 2572
TLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSA
Sbjct: 481 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 540
Query: 2571 AHPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVN 2392
A+PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVG+HRNPD VDVN
Sbjct: 541 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVN 600
Query: 2391 TEVGVIRDIRLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLV 2215
TEVGV+RDIRL+ELR+YTDYGRCSRPLFIVEK+RLLIKKKDI ALQQRE+ E+ GWHDLV
Sbjct: 601 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLV 660
Query: 2214 AKGFIEYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPF 2035
AKGFIEY+D +DLV AR+NP++AYSETYTHCEIHPSLILGVCASIIPF
Sbjct: 661 AKGFIEYIDTEEEETTMISMTINDLVQARVNPEEAYSETYTHCEIHPSLILGVCASIIPF 720
Query: 2034 PDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 1855
PDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
Sbjct: 721 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 780
Query: 1854 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPN 1675
AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+
Sbjct: 781 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 840
Query: 1674 RENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHST 1495
R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI Q+E QGQ SRY+RRDHS
Sbjct: 841 RANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEA-QGQASRYSRRDHSI 899
Query: 1494 SLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 1315
SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
Sbjct: 900 SLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 959
Query: 1314 PWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1135
PWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct: 960 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL 1019
Query: 1134 HRCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 955
H+CGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
Sbjct: 1020 HKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1079
Query: 954 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF 775
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF
Sbjct: 1080 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF 1139
Query: 774 ECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
ECRGCKNKTDIVQV+IPYACKLLFQELM+MAIAPRMLTKE P KDQKKKGA
Sbjct: 1140 ECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKE--PPKDQKKKGA 1189
>ref|XP_010108197.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
gi|587931023|gb|EXC18122.1| DNA-directed RNA polymerase
II subunit [Morus notabilis]
Length = 1193
Score = 2215 bits (5740), Expect = 0.0
Identities = 1096/1187 (92%), Positives = 1130/1187 (95%), Gaps = 2/1187 (0%)
Frame = -2
Query: 4173 YGGEEYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE 3994
Y + D D+DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE
Sbjct: 7 YDQQYNDDDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE 66
Query: 3993 IRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 3814
IRPESQHNPG QSDF ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL
Sbjct: 67 IRPESQHNPGHQSDFVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 126
Query: 3813 YVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 3634
YVDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD
Sbjct: 127 YVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 186
Query: 3633 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRM 3454
QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+MFVRM
Sbjct: 187 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 246
Query: 3453 LSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELL 3274
LSR S+KGGSSGQYIRATLPYIR EIPIIIVFRALGFVADKDILEHICYDFSDTQMMELL
Sbjct: 247 LSRTSSKGGSSGQYIRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELL 306
Query: 3273 RPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKK 3097
RPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVG G+ CETKK
Sbjct: 307 RPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGTGEFCETKK 366
Query: 3096 AYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 2917
AYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQK
Sbjct: 367 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 426
Query: 2916 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 2737
CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL
Sbjct: 427 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 486
Query: 2736 RRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPIL 2557
RRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PIL
Sbjct: 487 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 546
Query: 2556 EFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGV 2377
EFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PD VDVNTEVGV
Sbjct: 547 EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGV 606
Query: 2376 IRDIRLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFI 2200
+RDIRL+ELR+YTDYGRCSRPLFIVEK+RLLIKK+DI+ALQQRET EE GWHDLV+ GFI
Sbjct: 607 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIRALQQRETPEEAGWHDLVSNGFI 666
Query: 2199 EYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 2020
EY+D +DLV ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 667 EYIDTEEEETTMISMTINDLVQARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 726
Query: 2019 SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 1840
SPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 727 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 786
Query: 1839 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 1660
IVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTM
Sbjct: 787 IVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 846
Query: 1659 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHS 1480
GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QDE Q SRYTRRDHS SLRHS
Sbjct: 847 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAQGQAASRYTRRDHSISLRHS 906
Query: 1479 ESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLE 1300
E+G+VDQVLLTTNADGLRFVKVR+RS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+E
Sbjct: 907 ENGIVDQVLLTTNADGLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 966
Query: 1299 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGY 1120
GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGY
Sbjct: 967 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1026
Query: 1119 QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 940
QMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1027 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1086
Query: 939 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 760
DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC
Sbjct: 1087 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 1146
Query: 759 KNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
KNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTK+VKPL DQKKKGA
Sbjct: 1147 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKPLNDQKKKGA 1193
>ref|XP_008801262.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Phoenix
dactylifera]
Length = 1187
Score = 2215 bits (5740), Expect = 0.0
Identities = 1093/1177 (92%), Positives = 1131/1177 (96%), Gaps = 1/1177 (0%)
Frame = -2
Query: 4146 DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 3967
++DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA+IEIRPESQHNP
Sbjct: 12 EDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESANIEIRPESQHNP 71
Query: 3966 GRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRII 3787
GRQSDF ETIYKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK++I
Sbjct: 72 GRQSDFVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKVI 131
Query: 3786 KKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 3607
KKGHDCEEVTETQ+F KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING
Sbjct: 132 KKGHDCEEVTETQEFPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 191
Query: 3606 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSRASAKGG 3427
SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+Q+RP S+MFVRMLSR SAKGG
Sbjct: 192 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMPESQSRPASTMFVRMLSRTSAKGG 251
Query: 3426 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 3247
SSGQYIRATLPYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV
Sbjct: 252 SSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 311
Query: 3246 IQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYYFGYIIH 3070
IQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAYYFGYIIH
Sbjct: 312 IQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIH 371
Query: 3069 RLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 2890
RLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVN
Sbjct: 372 RLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVN 431
Query: 2889 LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 2710
LQFAIKAKTITSGLKYSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGR
Sbjct: 432 LQFAIKAKTITSGLKYSLATGNWGQANQAGARAGVSQVLNRLTYASTLSHLRRLNSPIGR 491
Query: 2709 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTE 2530
EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEW TE
Sbjct: 492 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWGTE 551
Query: 2529 NFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRDIRLREL 2350
NFEEISPAVIPQA+KIFVNG WVGIHRNPD +DVNTEVGV+RDIRL+EL
Sbjct: 552 NFEEISPAVIPQASKIFVNGSWVGIHRNPDLLVRTLRRLRRQIDVNTEVGVVRDIRLKEL 611
Query: 2349 RLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEEGWHDLVAKGFIEYVDXXXXXX 2170
RLYTDYGRCSRPLFIVE +RLLIKK+ IQALQQRE+ EEGWHDLVAKGFIEY+D
Sbjct: 612 RLYTDYGRCSRPLFIVENQRLLIKKRHIQALQQRESPEEGWHDLVAKGFIEYIDTEEEET 671
Query: 2169 XXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 1990
+DLVNAR NP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM
Sbjct: 672 TMIAMTINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 731
Query: 1989 GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 1810
GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY
Sbjct: 732 GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 791
Query: 1809 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKL 1630
NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKL
Sbjct: 792 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKL 851
Query: 1629 DDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESGMVDQVLL 1450
DDDGLAPPGTRVSGEDVIIGKT+PI QD++ QGQ SRYTRRDHSTS+RHSESGMVDQVLL
Sbjct: 852 DDDGLAPPGTRVSGEDVIIGKTSPIPQDDS-QGQASRYTRRDHSTSVRHSESGMVDQVLL 910
Query: 1449 TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNP 1270
TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNP
Sbjct: 911 TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 970
Query: 1269 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRGFETMYN 1090
HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRGFETMYN
Sbjct: 971 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1030
Query: 1089 GHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 910
GHTGR+L+AMIF+GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME
Sbjct: 1031 GHTGRKLTAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1090
Query: 909 RDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVH 730
RDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVH
Sbjct: 1091 RDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVH 1150
Query: 729 IPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
IPYACKLLFQELM+MAIAPRM +KEVK KDQKK+GA
Sbjct: 1151 IPYACKLLFQELMAMAIAPRMFSKEVKAAKDQKKRGA 1187
>ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gossypium
raimondii] gi|823234175|ref|XP_012449723.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB2 [Gossypium
raimondii] gi|728847618|gb|KHG27061.1| DNA-directed RNA
polymerase II subunit RPB2 [Gossypium arboreum]
gi|763801668|gb|KJB68623.1| hypothetical protein
B456_010G255400 [Gossypium raimondii]
gi|763801669|gb|KJB68624.1| hypothetical protein
B456_010G255400 [Gossypium raimondii]
Length = 1189
Score = 2214 bits (5736), Expect = 0.0
Identities = 1102/1192 (92%), Positives = 1135/1192 (95%), Gaps = 6/1192 (0%)
Frame = -2
Query: 4176 MYGGEEYDPA----DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 4009
M EYDP ++DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
Sbjct: 1 MEDDSEYDPQLMEDEDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 60
Query: 4008 SADIEIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 3829
SADIEIRPESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT
Sbjct: 61 SADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 120
Query: 3828 YSAPLYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 3649
YSAPLYVDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
Sbjct: 121 YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 180
Query: 3648 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSS 3469
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+
Sbjct: 181 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 240
Query: 3468 MFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ 3289
MFVRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ
Sbjct: 241 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ 300
Query: 3288 MMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD- 3112
MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+
Sbjct: 301 MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEF 360
Query: 3111 CETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 2932
CETKKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
Sbjct: 361 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 420
Query: 2931 AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 2752
+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
Sbjct: 421 SYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 480
Query: 2751 TLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSA 2572
TLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSA
Sbjct: 481 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 540
Query: 2571 AHPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVN 2392
A+PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVG+HRNPD VDVN
Sbjct: 541 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVN 600
Query: 2391 TEVGVIRDIRLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLV 2215
TEVGV+RDIRL+ELR+YTDYGRCSRPLFIVEK+RLLIKKKDI ALQQRET E+ GWHDLV
Sbjct: 601 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRETPEDGGWHDLV 660
Query: 2214 AKGFIEYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPF 2035
AKGFIEY+D +DLV AR+NP++AYSETYTHCEIHPSLILGVCASIIPF
Sbjct: 661 AKGFIEYIDTEEEETTMISMTINDLVQARINPEEAYSETYTHCEIHPSLILGVCASIIPF 720
Query: 2034 PDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 1855
PDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
Sbjct: 721 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 780
Query: 1854 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPN 1675
AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+
Sbjct: 781 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 840
Query: 1674 RENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHST 1495
R TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI Q+E QGQ SRY++RDHS
Sbjct: 841 RATTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEA-QGQASRYSKRDHSI 899
Query: 1494 SLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 1315
SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
Sbjct: 900 SLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 959
Query: 1314 PWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1135
PWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct: 960 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL 1019
Query: 1134 HRCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 955
H+CGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
Sbjct: 1020 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1079
Query: 954 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF 775
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF
Sbjct: 1080 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF 1139
Query: 774 ECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
ECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTKE P KDQKKKGA
Sbjct: 1140 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE--PPKDQKKKGA 1189
>ref|XP_009605280.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1
[Nicotiana tomentosiformis]
Length = 1191
Score = 2212 bits (5732), Expect = 0.0
Identities = 1096/1184 (92%), Positives = 1135/1184 (95%), Gaps = 2/1184 (0%)
Frame = -2
Query: 4164 EEYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 3985
++Y+ D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP
Sbjct: 9 QQYNNDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 68
Query: 3984 ESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 3805
ESQHNPG QSDFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD
Sbjct: 69 ESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 128
Query: 3804 VTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 3625
VTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGG
Sbjct: 129 VTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGG 188
Query: 3624 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSR 3445
YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSM E+QNRPPS+MFVRMLSR
Sbjct: 189 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSR 248
Query: 3444 ASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPS 3265
SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPS
Sbjct: 249 TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPS 308
Query: 3264 LEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYY 3088
LEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVG+G+ CETKKAYY
Sbjct: 309 LEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGEYCETKKAYY 368
Query: 3087 FGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 2908
FGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD
Sbjct: 369 FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 428
Query: 2907 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 2728
NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL
Sbjct: 429 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 488
Query: 2727 NSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFL 2548
NSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFL
Sbjct: 489 NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 548
Query: 2547 EEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRD 2368
EEW TENFEEISPAVIPQATKIFVNG WVGIHR+PD VDVNTEVGV+RD
Sbjct: 549 EEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRD 608
Query: 2367 IRLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEYV 2191
IRL+ELR+YTDYGRCSRPLFIVEK+RLLIKKKDIQ LQQRE+ EE GWHDLVAKG+IEY+
Sbjct: 609 IRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLVAKGYIEYI 668
Query: 2190 DXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 2011
D +DLV ARLNP++AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPR
Sbjct: 669 DTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPR 728
Query: 2010 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 1831
NTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA
Sbjct: 729 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 788
Query: 1830 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMR 1651
I+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R +TMGMR
Sbjct: 789 ISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMR 848
Query: 1650 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESG 1471
HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QD+ QGQ SRYTR+DHSTSLRHSE+G
Sbjct: 849 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDA-QGQASRYTRKDHSTSLRHSETG 907
Query: 1470 MVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGIT 1291
MVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGIT
Sbjct: 908 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 967
Query: 1290 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMR 1111
PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMR
Sbjct: 968 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1027
Query: 1110 GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 931
GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG
Sbjct: 1028 GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1087
Query: 930 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 751
LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK
Sbjct: 1088 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 1147
Query: 750 TDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
TDIVQVHIPYACKLLFQELM+MAIAPRMLTK+VK KDQKKKGA
Sbjct: 1148 TDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKQAKDQKKKGA 1191
>ref|XP_011027835.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Populus
euphratica]
Length = 1198
Score = 2211 bits (5729), Expect = 0.0
Identities = 1098/1186 (92%), Positives = 1133/1186 (95%), Gaps = 4/1186 (0%)
Frame = -2
Query: 4164 EEYDPADED--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 3991
E+ +P DED EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI
Sbjct: 14 EDMEPEDEDADEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 73
Query: 3990 RPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 3811
RPESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY
Sbjct: 74 RPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 133
Query: 3810 VDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ 3631
VDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ
Sbjct: 134 VDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ 193
Query: 3630 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRML 3451
GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSM E+QNRPPS+MFVRML
Sbjct: 194 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRML 253
Query: 3450 SRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLR 3271
SR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLR
Sbjct: 254 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLR 313
Query: 3270 PSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKA 3094
PSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKA
Sbjct: 314 PSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKA 373
Query: 3093 YYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC 2914
YYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKC
Sbjct: 374 YYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKC 433
Query: 2913 VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR 2734
VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR
Sbjct: 434 VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR 493
Query: 2733 RLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILE 2554
RLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILE
Sbjct: 494 RLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILE 553
Query: 2553 FLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVI 2374
FLEEW TENFEEISPAVIPQATKIFVNG WVGIHR+PD VDVNTEVGV+
Sbjct: 554 FLEEWGTENFEEISPAVIPQATKIFVNGGWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVV 613
Query: 2373 RDIRLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIE 2197
RDIRL+ELR+YTDYGRCSRPLFIVEK++LLI+KKDI ALQQRET +E GWHDLV+KGFIE
Sbjct: 614 RDIRLKELRIYTDYGRCSRPLFIVEKQKLLIRKKDIHALQQRETPDEGGWHDLVSKGFIE 673
Query: 2196 YVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQS 2017
Y+D DLV ARLNP++AYS+TYTHCEIHPSLILGVCASIIPFPDHNQS
Sbjct: 674 YIDTEEEETTMISMTIHDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQS 733
Query: 2016 PRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 1837
PRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI
Sbjct: 734 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 793
Query: 1836 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMG 1657
VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMG
Sbjct: 794 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 853
Query: 1656 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSE 1477
MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI Q+E QGQ++RYTRRDHS SLRHSE
Sbjct: 854 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEA-QGQSARYTRRDHSISLRHSE 912
Query: 1476 SGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEG 1297
+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EG
Sbjct: 913 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 972
Query: 1296 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQ 1117
ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQ
Sbjct: 973 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1032
Query: 1116 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 937
MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1033 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1092
Query: 936 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 757
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK
Sbjct: 1093 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 1152
Query: 756 NKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
NKTDIVQVHIPYACKLLFQELM+MAIAPRMLTK++K K QKKKGA
Sbjct: 1153 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDIKQAKSQKKKGA 1198
>ref|XP_009765275.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1
[Nicotiana sylvestris]
Length = 1191
Score = 2210 bits (5727), Expect = 0.0
Identities = 1095/1184 (92%), Positives = 1135/1184 (95%), Gaps = 2/1184 (0%)
Frame = -2
Query: 4164 EEYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 3985
++Y+ D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP
Sbjct: 9 QQYNNDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 68
Query: 3984 ESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 3805
ESQHNPG QSDFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD
Sbjct: 69 ESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 128
Query: 3804 VTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 3625
VTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGG
Sbjct: 129 VTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGG 188
Query: 3624 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSR 3445
YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSM E+QNRPPS+MFVRMLSR
Sbjct: 189 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSR 248
Query: 3444 ASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPS 3265
SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPS
Sbjct: 249 TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPS 308
Query: 3264 LEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYY 3088
LEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVG+G+ CETKKAYY
Sbjct: 309 LEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGEYCETKKAYY 368
Query: 3087 FGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 2908
FGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD
Sbjct: 369 FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 428
Query: 2907 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 2728
NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL
Sbjct: 429 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 488
Query: 2727 NSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFL 2548
NSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFL
Sbjct: 489 NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 548
Query: 2547 EEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRD 2368
EEW TENFEEISPAVIPQATKIFVNG WVGIHR+PD VDVNTEVGV+RD
Sbjct: 549 EEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRD 608
Query: 2367 IRLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEYV 2191
IRL+ELR+YTDYGRCSRPLFIVEK+RLLIKKKDIQ LQQRE+ EE GWHDLVAKG+IEY+
Sbjct: 609 IRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLVAKGYIEYI 668
Query: 2190 DXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 2011
D +DLV ARLNP++AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPR
Sbjct: 669 DTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPR 728
Query: 2010 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 1831
NTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA
Sbjct: 729 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 788
Query: 1830 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMR 1651
I+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R +TMGMR
Sbjct: 789 ISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMR 848
Query: 1650 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESG 1471
HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QD+ QGQ SRYTR+DHSTSLRHSE+G
Sbjct: 849 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDA-QGQASRYTRKDHSTSLRHSETG 907
Query: 1470 MVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGIT 1291
MVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGIT
Sbjct: 908 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 967
Query: 1290 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMR 1111
PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMR
Sbjct: 968 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1027
Query: 1110 GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 931
GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG
Sbjct: 1028 GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1087
Query: 930 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 751
LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKK+SFECRGCKNK
Sbjct: 1088 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKSSFECRGCKNK 1147
Query: 750 TDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
TDIVQVHIPYACKLLFQELM+MAIAPRMLTK+VK KDQKKKGA
Sbjct: 1148 TDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKQAKDQKKKGA 1191
>ref|XP_011096303.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sesamum
indicum]
Length = 1193
Score = 2207 bits (5719), Expect = 0.0
Identities = 1094/1189 (92%), Positives = 1134/1189 (95%), Gaps = 4/1189 (0%)
Frame = -2
Query: 4173 YGGEEY--DPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 4000
Y ++Y + DEDEEITQEDAW VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE+AD
Sbjct: 6 YYDQDYNEEEEDEDEEITQEDAWPVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDEAAD 65
Query: 3999 IEIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 3820
IEIRPESQHNPG Q +FAETIYKISFGQIYLSKPMMTESDGETATLFP+AARLRNLTYSA
Sbjct: 66 IEIRPESQHNPGHQPEFAETIYKISFGQIYLSKPMMTESDGETATLFPRAARLRNLTYSA 125
Query: 3819 PLYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 3640
PLYVDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP
Sbjct: 126 PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 185
Query: 3639 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFV 3460
YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E QNRPPS+MFV
Sbjct: 186 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFV 245
Query: 3459 RMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMME 3280
RMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+FSDTQMME
Sbjct: 246 RMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFSDTQMME 305
Query: 3279 LLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CET 3103
LLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CET
Sbjct: 306 LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCET 365
Query: 3102 KKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 2923
KKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YV
Sbjct: 366 KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYV 425
Query: 2922 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 2743
QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS
Sbjct: 426 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 485
Query: 2742 HLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHP 2563
HLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+P
Sbjct: 486 HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 545
Query: 2562 ILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEV 2383
ILEFLEEW TENF+EISPAVIPQATKIFVNGCWVGIHRNPD VDVNTEV
Sbjct: 546 ILEFLEEWGTENFKEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTLRRLRRRVDVNTEV 605
Query: 2382 GVIRDIRLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKG 2206
GV+RDIRL+ELR+YTDYGRCSRPLFIVEK+RLLIKKKDI+ALQQRE+ E+ GWHDLVAKG
Sbjct: 606 GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPEDGGWHDLVAKG 665
Query: 2205 FIEYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDH 2026
FIEY+D DLVNARLNP +AYS+TYTHCEIHPSLILGVCASIIPFPDH
Sbjct: 666 FIEYIDTEEEETTMISMTIGDLVNARLNPTEAYSDTYTHCEIHPSLILGVCASIIPFPDH 725
Query: 2025 NQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 1846
NQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI
Sbjct: 726 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 785
Query: 1845 NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNREN 1666
NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R N
Sbjct: 786 NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRAN 845
Query: 1665 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLR 1486
TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI D+ QGQ +RYT+RDHSTSLR
Sbjct: 846 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISPDDA-QGQAARYTKRDHSTSLR 904
Query: 1485 HSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 1306
HSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT
Sbjct: 905 HSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 964
Query: 1305 LEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRC 1126
LEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALH+C
Sbjct: 965 LEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1024
Query: 1125 GYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 946
GYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR
Sbjct: 1025 GYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1084
Query: 945 SRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECR 766
SRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE+CGLIAIANLKKNSFECR
Sbjct: 1085 SRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEQCGLIAIANLKKNSFECR 1144
Query: 765 GCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
GCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTK++K K+ KKKGA
Sbjct: 1145 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDIKQSKELKKKGA 1193
>gb|AES59623.2| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
Length = 1195
Score = 2207 bits (5719), Expect = 0.0
Identities = 1090/1184 (92%), Positives = 1136/1184 (95%), Gaps = 2/1184 (0%)
Frame = -2
Query: 4164 EEYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 3985
++ + D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP
Sbjct: 13 QQMEEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 72
Query: 3984 ESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 3805
ESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD
Sbjct: 73 ESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 132
Query: 3804 VTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 3625
V+KR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG
Sbjct: 133 VSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 192
Query: 3624 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSR 3445
YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSM E+QNRPPS+MFVRMLSR
Sbjct: 193 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSR 252
Query: 3444 ASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPS 3265
ASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPS
Sbjct: 253 ASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPS 312
Query: 3264 LEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYY 3088
LEEAFVIQNQQVALDYIGKRGSTVGVT+EKRIKYAK+ILQKEMLPHVGVG+ CETKKAYY
Sbjct: 313 LEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKDILQKEMLPHVGVGEYCETKKAYY 372
Query: 3087 FGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 2908
FGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVD
Sbjct: 373 FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVD 432
Query: 2907 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 2728
NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL
Sbjct: 433 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 492
Query: 2727 NSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFL 2548
NSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFL
Sbjct: 493 NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 552
Query: 2547 EEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRD 2368
EEW TENFEEISPAVIPQATKIFVNGCW+GIHR+PD VDVNTEVGV+RD
Sbjct: 553 EEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRD 612
Query: 2367 IRLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEYV 2191
IRL+ELR+YTDYGRCSRPLFIV+K+RLLIKKKDI +LQQRE+ E+ GWHDLV+KGFIEY+
Sbjct: 613 IRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEDGGWHDLVSKGFIEYI 672
Query: 2190 DXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 2011
D +DLV ARLNP++AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPR
Sbjct: 673 DTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPR 732
Query: 2010 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 1831
NTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA
Sbjct: 733 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 792
Query: 1830 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMR 1651
I+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMR
Sbjct: 793 ISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMR 852
Query: 1650 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESG 1471
HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+ Q+E QQGQ +RY++RDHS SLRHSE+G
Sbjct: 853 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEE-QQGQAARYSKRDHSISLRHSETG 911
Query: 1470 MVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGIT 1291
+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGIT
Sbjct: 912 IVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 971
Query: 1290 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMR 1111
PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMR
Sbjct: 972 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1031
Query: 1110 GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 931
GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG
Sbjct: 1032 GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1091
Query: 930 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 751
LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK
Sbjct: 1092 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 1151
Query: 750 TDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
TDIVQV+IPYACKLLFQELM+MAIAPRMLTKEVK +KDQKKKGA
Sbjct: 1152 TDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVKAIKDQKKKGA 1195
>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 2207 bits (5718), Expect = 0.0
Identities = 1096/1188 (92%), Positives = 1133/1188 (95%), Gaps = 6/1188 (0%)
Frame = -2
Query: 4164 EEYDPA----DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 3997
+EY+P D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI
Sbjct: 5 DEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 64
Query: 3996 EIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 3817
EIRPESQHNPG QSDFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP
Sbjct: 65 EIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 124
Query: 3816 LYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY 3637
LYVDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP
Sbjct: 125 LYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPL 184
Query: 3636 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVR 3457
DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSM + QNRPPS+MFVR
Sbjct: 185 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVR 244
Query: 3456 MLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMEL 3277
MLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMEL
Sbjct: 245 MLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMEL 304
Query: 3276 LRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETK 3100
LRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETK
Sbjct: 305 LRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETK 364
Query: 3099 KAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2920
KAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQ
Sbjct: 365 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQ 424
Query: 2919 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2740
KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 425 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 484
Query: 2739 LRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPI 2560
LRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PI
Sbjct: 485 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 544
Query: 2559 LEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVG 2380
LEFLEEW TENFEEISPAVIPQATKIFVNG WVGIHR+PD VDVNTEVG
Sbjct: 545 LEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVG 604
Query: 2379 VIRDIRLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGF 2203
V+RDIRL+ELR+YTDYGRCSRPLFIVEK+RL+IKKKDIQ LQQRE+ +E GWHDLVAKG+
Sbjct: 605 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGY 664
Query: 2202 IEYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHN 2023
IEY+D +DLV ARLNP DAYS+TYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 665 IEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHN 724
Query: 2022 QSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1843
QSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 725 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 784
Query: 1842 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENT 1663
AIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R +T
Sbjct: 785 AIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRAST 844
Query: 1662 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRH 1483
MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QD+ QGQ SRYTR+DHSTSLRH
Sbjct: 845 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDA-QGQASRYTRKDHSTSLRH 903
Query: 1482 SESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTL 1303
SE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+
Sbjct: 904 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 963
Query: 1302 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCG 1123
EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CG
Sbjct: 964 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1023
Query: 1122 YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 943
YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1024 YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1083
Query: 942 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG 763
RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG
Sbjct: 1084 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG 1143
Query: 762 CKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
CKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTK+VK KDQKKKGA
Sbjct: 1144 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKLAKDQKKKGA 1191
>ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Citrus
sinensis]
Length = 1195
Score = 2205 bits (5714), Expect = 0.0
Identities = 1096/1184 (92%), Positives = 1130/1184 (95%), Gaps = 3/1184 (0%)
Frame = -2
Query: 4161 EYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 3982
+ + DE+EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE
Sbjct: 13 QQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
Query: 3981 SQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 3802
SQHNPG+QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV
Sbjct: 73 SQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
Query: 3801 TKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 3622
TKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY
Sbjct: 133 TKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 192
Query: 3621 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSRA 3442
FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+MFVRMLSR
Sbjct: 193 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRT 252
Query: 3441 SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSL 3262
SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSL
Sbjct: 253 SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSL 312
Query: 3261 EEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYYF 3085
EEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKEMLPHVG GD CETKKAYYF
Sbjct: 313 EEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYF 372
Query: 3084 GYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 2905
GYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN
Sbjct: 373 GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 432
Query: 2904 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 2725
GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN
Sbjct: 433 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
Query: 2724 SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLE 2545
SPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLE
Sbjct: 493 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552
Query: 2544 EWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRDI 2365
EW TENFEEISPAVIPQATKIFVNGCWVGIHR+P+ VDVNTEVGV+RDI
Sbjct: 553 EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612
Query: 2364 RLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEYVD 2188
RL+ELR+YTDYGRCSRPLFIVEK+RLLIKK+DI ALQQRE+ E+ GWHDLVAKGFIEY+D
Sbjct: 613 RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYID 672
Query: 2187 XXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRN 2008
+DLV ARL+P++AY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRN
Sbjct: 673 TEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
Query: 2007 TYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 1828
TYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI
Sbjct: 733 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
Query: 1827 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRH 1648
ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRH
Sbjct: 793 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
Query: 1647 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESGM 1468
GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QDE QGQ SRYTRRDHS SLRHSE+GM
Sbjct: 853 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEA-QGQASRYTRRDHSISLRHSETGM 911
Query: 1467 VDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITP 1288
VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITP
Sbjct: 912 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
Query: 1287 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRG 1108
DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRG
Sbjct: 972 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
Query: 1107 FETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 928
FETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL
Sbjct: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
Query: 927 RFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKT 748
RFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKT
Sbjct: 1092 RFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKT 1151
Query: 747 DIVQVHIPYACKLLFQELMSMAIAPRMLTKE-VKPLKDQKKKGA 619
DIVQVHIPYACKLLFQELM+MAIAPRMLTKE K KD KKKGA
Sbjct: 1152 DIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195
>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
tuberosum]
Length = 1191
Score = 2204 bits (5711), Expect = 0.0
Identities = 1095/1188 (92%), Positives = 1132/1188 (95%), Gaps = 6/1188 (0%)
Frame = -2
Query: 4164 EEYDPA----DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 3997
+EY+P D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI
Sbjct: 5 DEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 64
Query: 3996 EIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 3817
EIRPESQHNPG QSDFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP
Sbjct: 65 EIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 124
Query: 3816 LYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY 3637
LYVDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP
Sbjct: 125 LYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPL 184
Query: 3636 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVR 3457
DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSM E+QNRPPS+MFVR
Sbjct: 185 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVR 244
Query: 3456 MLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMEL 3277
MLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMEL
Sbjct: 245 MLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMEL 304
Query: 3276 LRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETK 3100
LRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETK
Sbjct: 305 LRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETK 364
Query: 3099 KAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2920
KAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQ
Sbjct: 365 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQ 424
Query: 2919 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2740
KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 425 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 484
Query: 2739 LRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPI 2560
LRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PI
Sbjct: 485 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 544
Query: 2559 LEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVG 2380
LEFLEEW TENFEEISPAVIPQATKIFVNG WVGIHR+PD VDVNTEVG
Sbjct: 545 LEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVG 604
Query: 2379 VIRDIRLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGF 2203
V+RDIRL+ELR+YTDYGRCSRPLFIVEK+RL+IKKKDIQ LQQRE+ +E GWHDLVAKG+
Sbjct: 605 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGY 664
Query: 2202 IEYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHN 2023
IEY+D +DLV ARLNP DAYS+TYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 665 IEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHN 724
Query: 2022 QSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1843
QSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 725 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 784
Query: 1842 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENT 1663
AIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R T
Sbjct: 785 AIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRATT 844
Query: 1662 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRH 1483
MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QD+ QGQ SRYTR+DHSTSLRH
Sbjct: 845 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDA-QGQASRYTRKDHSTSLRH 903
Query: 1482 SESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTL 1303
SE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+
Sbjct: 904 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 963
Query: 1302 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCG 1123
EGI+PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CG
Sbjct: 964 EGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1023
Query: 1122 YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 943
YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1024 YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1083
Query: 942 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG 763
RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG
Sbjct: 1084 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG 1143
Query: 762 CKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 619
CKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTK+VK KDQKKK A
Sbjct: 1144 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKLAKDQKKKAA 1191
>ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
gi|557525528|gb|ESR36834.1| hypothetical protein
CICLE_v10027701mg [Citrus clementina]
gi|641824899|gb|KDO44201.1| hypothetical protein
CISIN_1g000996mg [Citrus sinensis]
Length = 1195
Score = 2204 bits (5711), Expect = 0.0
Identities = 1095/1184 (92%), Positives = 1130/1184 (95%), Gaps = 3/1184 (0%)
Frame = -2
Query: 4161 EYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 3982
+ + DE+EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE
Sbjct: 13 QQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
Query: 3981 SQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 3802
SQHNPG+QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV
Sbjct: 73 SQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
Query: 3801 TKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 3622
TKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY
Sbjct: 133 TKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 192
Query: 3621 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSRA 3442
FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+MFVRMLSR
Sbjct: 193 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRT 252
Query: 3441 SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSL 3262
SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSL
Sbjct: 253 SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSL 312
Query: 3261 EEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYYF 3085
EEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKEMLPHVG GD CETKKAYYF
Sbjct: 313 EEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYF 372
Query: 3084 GYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 2905
GYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN
Sbjct: 373 GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 432
Query: 2904 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 2725
GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN
Sbjct: 433 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
Query: 2724 SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLE 2545
SPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLE
Sbjct: 493 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552
Query: 2544 EWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRDI 2365
EW TENFEEISPAVIPQATKIFVNGCWVGIHR+P+ VDVNTEVGV+RDI
Sbjct: 553 EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612
Query: 2364 RLRELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEYVD 2188
RL+ELR+YTDYGRCSRPLFIVEK+RLLIKK+DI ALQQRE+ E+ GWHDLVAKGFIEY+D
Sbjct: 613 RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYID 672
Query: 2187 XXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRN 2008
+DLV ARL+P++AY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRN
Sbjct: 673 TEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
Query: 2007 TYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 1828
TYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI
Sbjct: 733 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
Query: 1827 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRH 1648
ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRH
Sbjct: 793 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
Query: 1647 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESGM 1468
GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QDE QGQ SRYTRRDHS SLRHSE+GM
Sbjct: 853 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEA-QGQASRYTRRDHSISLRHSETGM 911
Query: 1467 VDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITP 1288
VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITP
Sbjct: 912 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
Query: 1287 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRG 1108
DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRG
Sbjct: 972 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
Query: 1107 FETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 928
FETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL
Sbjct: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
Query: 927 RFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKT 748
RFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKT
Sbjct: 1092 RFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKT 1151
Query: 747 DIVQVHIPYACKLLFQELMSMAIAPRMLTKE-VKPLKDQKKKGA 619
DIVQVHIPYACKLLFQELM+MAIAPRMLTKE K KD KKKGA
Sbjct: 1152 DIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195