BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00007560
         (1906 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF,...   554   e-155
ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF,...   551   e-154
ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF,...   550   e-153
ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF,...   533   e-148
ref|XP_011624483.1| PREDICTED: RNA polymerase sigma factor sigF,...   514   e-143
gb|ERM94834.1| hypothetical protein AMTR_s00009p00072720 [Ambore...   511   e-142
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   503   e-139
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   496   e-137
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   494   e-137
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   491   e-136
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   491   e-136
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              491   e-136
ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF,...   485   e-134
gb|AKC88770.1| sigma factor [Francoa sonchifolia]                     478   e-132
ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   477   e-131
ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF,...   476   e-131
ref|XP_009384040.1| PREDICTED: RNA polymerase sigma factor sigF,...   474   e-130
ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF,...   474   e-130
ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF,...   471   e-130
ref|XP_012443171.1| PREDICTED: RNA polymerase sigma factor sigF,...   463   e-127

>ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 565

 Score =  554 bits (1428), Expect = e-155
 Identities = 304/557 (54%), Positives = 373/557 (66%), Gaps = 4/557 (0%)
 Frame = -1

Query: 1789 SSSVPIIHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITEVKET----LDWR 1622
            SSSV ++HEQA P+V+ M TTSI RHFPA  L QEQ DD RP L I    +T    LD R
Sbjct: 24   SSSVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRR 83

Query: 1621 RMNNDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLATEN 1442
            ++ + V + +EKKS Q  +Y + FERQ LYWPGLWYL        K +L   T+S A   
Sbjct: 84   KLEDKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGT 143

Query: 1441 AKTVGTKPIKQSSSKSMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXX 1262
             K V            +RP D L+                                    
Sbjct: 144  VKNV-----------DVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEP 192

Query: 1261 XXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDPSLRMTDRDRKISSKNFD 1082
                +  +P+ EE  V              +P+ PKV +    + R +D  +KI  + FD
Sbjct: 193  RNLAN-KIPLREEVAVRSKRLLERQSKRRWIPR-PKVVVSEASTSRKSDIHKKIH-EGFD 249

Query: 1081 PSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWAEAV 902
             +DPLRLFLWGPETK+LLT KEE +L V +QEL++LEEVKQ+LQ QF REPTLVEWAEAV
Sbjct: 250  TNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAV 309

Query: 901  GMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEK 722
            GM C+ LQS LHSGNSSREK+IYAN RLVVHVAK +Q +GL+LQDLLQEGSMGLMKSLEK
Sbjct: 310  GMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEK 369

Query: 721  FKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEGHQPT 542
            FKP+ GCRF+TY+YWWIRQ IR+AI QNSR IRLPENVY+LL+Q++  ++LFIQEGH PT
Sbjct: 370  FKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPT 429

Query: 541  NEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQL 362
            NEELA+RVGI VEKLE +  S R P+S+QQ VW D+  TFQEITAD E E P++   KQL
Sbjct: 430  NEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQL 489

Query: 361  MRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDKL 182
            MRRHVRNL+ +L P+ER+IIR+R+GI++  + K+L  IG +FGLSKERVRQLESRAL KL
Sbjct: 490  MRRHVRNLISILPPKERRIIRMRYGIEN-NEPKSLQEIGSIFGLSKERVRQLESRALHKL 548

Query: 181  KNHLSSEGLEAYVNLLI 131
            K  LSS+GL AY +LL+
Sbjct: 549  KQCLSSQGLGAYADLLV 565


>ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 568

 Score =  551 bits (1419), Expect = e-154
 Identities = 304/561 (54%), Positives = 374/561 (66%), Gaps = 6/561 (1%)
 Frame = -1

Query: 1795 SLSSSVPI--IHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITEVKET---- 1634
            S SS +P+  +HEQA P+V+ M TTSI RHFPA  L QEQ DD RP L I    +T    
Sbjct: 23   SSSSGMPVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAM 82

Query: 1633 LDWRRMNNDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESL 1454
            LD R++ + V + +EKKS Q  +Y + FERQ LYWPGLWYL        K +L   T+S 
Sbjct: 83   LDRRKLEDKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQST 142

Query: 1453 ATENAKTVGTKPIKQSSSKSMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXX 1274
            A    K V            +RP D L+                                
Sbjct: 143  AAGTVKNV-----------DVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLP 191

Query: 1273 XXXXXXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDPSLRMTDRDRKISS 1094
                    +  +P+ EE  V              +P+ PKV +    + R +D  +KI  
Sbjct: 192  DLEPRNLAN-KIPLREEVAVRSKRLLERQSKRRWIPR-PKVVVSEASTSRKSDIHKKIH- 248

Query: 1093 KNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEW 914
            + FD +DPLRLFLWGPETK+LLT KEE +L V +QEL++LEEVKQ+LQ QF REPTLVEW
Sbjct: 249  EGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEW 308

Query: 913  AEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMK 734
            AEAVGM C+ LQS LHSGNSSREK+IYAN RLVVHVAK +Q +GL+LQDLLQEGSMGLMK
Sbjct: 309  AEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMK 368

Query: 733  SLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEG 554
            SLEKFKP+ GCRF+TY+YWWIRQ IR+AI QNSR IRLPENVY+LL+Q++  ++LFIQEG
Sbjct: 369  SLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEG 428

Query: 553  HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISA 374
            H PTNEELA+RVGI VEKLE +  S R P+S+QQ VW D+  TFQEITAD E E P++  
Sbjct: 429  HHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCV 488

Query: 373  TKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRA 194
             KQLMRRHVRNL+ +L P+ER+IIR+R+GI++  + K+L  IG +FGLSKERVRQLESRA
Sbjct: 489  AKQLMRRHVRNLISILPPKERRIIRMRYGIEN-NEPKSLQEIGSIFGLSKERVRQLESRA 547

Query: 193  LDKLKNHLSSEGLEAYVNLLI 131
            L KLK  LSS+GL AY +LL+
Sbjct: 548  LHKLKQCLSSQGLGAYADLLV 568


>ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 540

 Score =  550 bits (1416), Expect = e-153
 Identities = 301/554 (54%), Positives = 370/554 (66%), Gaps = 4/554 (0%)
 Frame = -1

Query: 1780 VPIIHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITEVKET----LDWRRMN 1613
            V ++HEQA P+V+ M TTSI RHFPA  L QEQ DD RP L I    +T    LD R++ 
Sbjct: 2    VTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLE 61

Query: 1612 NDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLATENAKT 1433
            + V + +EKKS Q  +Y + FERQ LYWPGLWYL        K +L   T+S A    K 
Sbjct: 62   DKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTVKN 121

Query: 1432 VGTKPIKQSSSKSMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXX 1253
            V            +RP D L+                                       
Sbjct: 122  V-----------DVRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPRNL 170

Query: 1252 XDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDPSLRMTDRDRKISSKNFDPSD 1073
             +  +P+ EE  V              +P+ PKV +    + R +D  +KI  + FD +D
Sbjct: 171  AN-KIPLREEVAVRSKRLLERQSKRRWIPR-PKVVVSEASTSRKSDIHKKIH-EGFDTND 227

Query: 1072 PLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWAEAVGMN 893
            PLRLFLWGPETK+LLT KEE +L V +QEL++LEEVKQ+LQ QF REPTLVEWAEAVGM 
Sbjct: 228  PLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMT 287

Query: 892  CRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEKFKP 713
            C+ LQS LHSGNSSREK+IYAN RLVVHVAK +Q +GL+LQDLLQEGSMGLMKSLEKFKP
Sbjct: 288  CQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKP 347

Query: 712  EVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEGHQPTNEE 533
            + GCRF+TY+YWWIRQ IR+AI QNSR IRLPENVY+LL+Q++  ++LFIQEGH PTNEE
Sbjct: 348  QAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPTNEE 407

Query: 532  LARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQLMRR 353
            LA+RVGI VEKLE +  S R P+S+QQ VW D+  TFQEITAD E E P++   KQLMRR
Sbjct: 408  LAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMRR 467

Query: 352  HVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDKLKNH 173
            HVRNL+ +L P+ER+IIR+R+GI++  + K+L  IG +FGLSKERVRQLESRAL KLK  
Sbjct: 468  HVRNLISILPPKERRIIRMRYGIEN-NEPKSLQEIGSIFGLSKERVRQLESRALHKLKQC 526

Query: 172  LSSEGLEAYVNLLI 131
            LSS+GL AY +LL+
Sbjct: 527  LSSQGLGAYADLLV 540


>ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X4
            [Nelumbo nucifera]
          Length = 525

 Score =  533 bits (1373), Expect = e-148
 Identities = 294/540 (54%), Positives = 359/540 (66%), Gaps = 4/540 (0%)
 Frame = -1

Query: 1738 MQTTSIARHFPALALCQEQCDDFRPSLHITEVKET----LDWRRMNNDVSVCKEKKSYQY 1571
            M TTSI RHFPA  L QEQ DD RP L I    +T    LD R++ + V + +EKKS Q 
Sbjct: 1    MPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKKSCQP 60

Query: 1570 HQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLATENAKTVGTKPIKQSSSKSM 1391
             +Y + FERQ LYWPGLWYL        K +L   T+S A    K V            +
Sbjct: 61   DRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTVKNV-----------DV 109

Query: 1390 RPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXDVMVPIEEEATVX 1211
            RP D L+                                        +  +P+ EE  V 
Sbjct: 110  RPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPRNLAN-KIPLREEVAVR 168

Query: 1210 XXXXXXXXXXXXXLPKTPKVDLHGDPSLRMTDRDRKISSKNFDPSDPLRLFLWGPETKEL 1031
                         +P+ PKV +    + R +D  +KI  + FD +DPLRLFLWGPETK+L
Sbjct: 169  SKRLLERQSKRRWIPR-PKVVVSEASTSRKSDIHKKIH-EGFDTNDPLRLFLWGPETKQL 226

Query: 1030 LTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSS 851
            LT KEE +L V +QEL++LEEVKQ+LQ QF REPTLVEWAEAVGM C+ LQS LHSGNSS
Sbjct: 227  LTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMTCQSLQSILHSGNSS 286

Query: 850  REKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWI 671
            REK+IYAN RLVVHVAK +Q +GL+LQDLLQEGSMGLMKSLEKFKP+ GCRF+TY+YWWI
Sbjct: 287  REKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATYAYWWI 346

Query: 670  RQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEGHQPTNEELARRVGIRVEKLEM 491
            RQ IR+AI QNSR IRLPENVY+LL+Q++  ++LFIQEGH PTNEELA+RVGI VEKLE 
Sbjct: 347  RQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPTNEELAKRVGITVEKLER 406

Query: 490  VLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQLMRRHVRNLLCVLSPRER 311
            +  S R P+S+QQ VW D+  TFQEITAD E E P++   KQLMRRHVRNL+ +L P+ER
Sbjct: 407  LFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMRRHVRNLISILPPKER 466

Query: 310  QIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDKLKNHLSSEGLEAYVNLLI 131
            +IIR+R+GI++  + K+L  IG +FGLSKERVRQLESRAL KLK  LSS+GL AY +LL+
Sbjct: 467  RIIRMRYGIEN-NEPKSLQEIGSIFGLSKERVRQLESRALHKLKQCLSSQGLGAYADLLV 525


>ref|XP_011624483.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Amborella
            trichopoda]
          Length = 581

 Score =  514 bits (1324), Expect = e-143
 Identities = 287/558 (51%), Positives = 357/558 (63%), Gaps = 6/558 (1%)
 Frame = -1

Query: 1789 SSSVPIIHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFR-PSLHITEVK---ETLDWR 1622
            SSSV    +QA      + TTS  RHFPA  +  EQ DD R P+    E K   E +D  
Sbjct: 28   SSSVLTSPDQAPLTATMLSTTSAVRHFPASVVLHEQRDDLRSPTSSPKEDKAYQEVMDRA 87

Query: 1621 RMNNDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQIL--PSSTESLAT 1448
            R     S+  E K+++  QYLK FERQ LYWP LWYLS PS    K +L  P   + L T
Sbjct: 88   RTEVYASIGAETKNFEIDQYLKDFERQLLYWPALWYLS-PSRILPKSLLSLPFQCKPLET 146

Query: 1447 ENAKTVGTKPIKQSSSKSMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXX 1268
            +    +     KQ++  S+ P DVL                                   
Sbjct: 147  DIESEIKESRKKQTNCSSLNPMDVL-VLAKRAVMASKAAAALVEHSDLTVGNPDGDISPC 205

Query: 1267 XXXXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDPSLRMTDRDRKISSKN 1088
                   + VP E+  T                 + PK       +  +  +  K+ +K+
Sbjct: 206  SGLKEICIQVPDEDMRTTIRSKRHLERQIKRR--RVPKKLKDFSANFEIGKKPEKVKNKS 263

Query: 1087 FDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWAE 908
            FDP+DPLR FLWGP TK+LLT KEE +L VKIQ+LM++EEVK++L++QFG EPT+VEWA 
Sbjct: 264  FDPNDPLRFFLWGPITKQLLTEKEESELFVKIQDLMRVEEVKKELEMQFGCEPTVVEWAR 323

Query: 907  AVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSL 728
            A GM+   LQSC+H G  SREKMIYAN RLVVHVAK +Q RGLS+QDLLQEGS+GLMKSL
Sbjct: 324  AAGMSYGSLQSCIHFGRKSREKMIYANFRLVVHVAKNYQGRGLSIQDLLQEGSVGLMKSL 383

Query: 727  EKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEGHQ 548
            EKFKP+ GCRFSTY+YWWIRQ IR+++ QNSR IRLPENVY LLT+I+N RRL+ QEGH+
Sbjct: 384  EKFKPKTGCRFSTYAYWWIRQAIRKSLFQNSRTIRLPENVYGLLTKIKNARRLYFQEGHR 443

Query: 547  PTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATK 368
            PTNEELA+RVGI V+KLE V   ++ PVS+QQ VW D+ VT QEITADP+ E PE +  K
Sbjct: 444  PTNEELAQRVGITVDKLETVRVFSKLPVSIQQPVWSDQDVTIQEITADPKVETPEKNVAK 503

Query: 367  QLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALD 188
            QLMRRHVRNLL +L+PRERQ+I LRFGIQ G + K+LS IG MF +SKER+RQ+ES+AL+
Sbjct: 504  QLMRRHVRNLLSLLNPRERQVINLRFGIQ-GRERKSLSEIGGMFNVSKERIRQVESKALE 562

Query: 187  KLKNHLSSEGLEAYVNLL 134
            KLKN   ++GLE Y  LL
Sbjct: 563  KLKNCTQTQGLEVYAELL 580


>gb|ERM94834.1| hypothetical protein AMTR_s00009p00072720 [Amborella trichopoda]
          Length = 573

 Score =  511 bits (1316), Expect = e-142
 Identities = 283/550 (51%), Positives = 353/550 (64%), Gaps = 6/550 (1%)
 Frame = -1

Query: 1765 EQAGPVVMPMQTTSIARHFPALALCQEQCDDFR-PSLHITEVK---ETLDWRRMNNDVSV 1598
            +QA      + TTS  RHFPA  +  EQ DD R P+    E K   E +D  R     S+
Sbjct: 28   DQAPLTATMLSTTSAVRHFPASVVLHEQRDDLRSPTSSPKEDKAYQEVMDRARTEVYASI 87

Query: 1597 CKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQIL--PSSTESLATENAKTVGT 1424
              E K+++  QYLK FERQ LYWP LWYLS PS    K +L  P   + L T+    +  
Sbjct: 88   GAETKNFEIDQYLKDFERQLLYWPALWYLS-PSRILPKSLLSLPFQCKPLETDIESEIKE 146

Query: 1423 KPIKQSSSKSMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXDV 1244
               KQ++  S+ P DVL                                          +
Sbjct: 147  SRKKQTNCSSLNPMDVL-VLAKRAVMASKAAAALVEHSDLTVGNPDGDISPCSGLKEICI 205

Query: 1243 MVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDPSLRMTDRDRKISSKNFDPSDPLR 1064
             VP E+  T                 + PK       +  +  +  K+ +K+FDP+DPLR
Sbjct: 206  QVPDEDMRTTIRSKRHLERQIKRR--RVPKKLKDFSANFEIGKKPEKVKNKSFDPNDPLR 263

Query: 1063 LFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWAEAVGMNCRD 884
             FLWGP TK+LLT KEE +L VKIQ+LM++EEVK++L++QFG EPT+VEWA A GM+   
Sbjct: 264  FFLWGPITKQLLTEKEESELFVKIQDLMRVEEVKKELEMQFGCEPTVVEWARAAGMSYGS 323

Query: 883  LQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVG 704
            LQSC+H G  SREKMIYAN RLVVHVAK +Q RGLS+QDLLQEGS+GLMKSLEKFKP+ G
Sbjct: 324  LQSCIHFGRKSREKMIYANFRLVVHVAKNYQGRGLSIQDLLQEGSVGLMKSLEKFKPKTG 383

Query: 703  CRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEGHQPTNEELAR 524
            CRFSTY+YWWIRQ IR+++ QNSR IRLPENVY LLT+I+N RRL+ QEGH+PTNEELA+
Sbjct: 384  CRFSTYAYWWIRQAIRKSLFQNSRTIRLPENVYGLLTKIKNARRLYFQEGHRPTNEELAQ 443

Query: 523  RVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQLMRRHVR 344
            RVGI V+KLE V   ++ PVS+QQ VW D+ VT QEITADP+ E PE +  KQLMRRHVR
Sbjct: 444  RVGITVDKLETVRVFSKLPVSIQQPVWSDQDVTIQEITADPKVETPEKNVAKQLMRRHVR 503

Query: 343  NLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDKLKNHLSS 164
            NLL +L+PRERQ+I LRFGIQ G + K+LS IG MF +SKER+RQ+ES+AL+KLKN   +
Sbjct: 504  NLLSLLNPRERQVINLRFGIQ-GRERKSLSEIGGMFNVSKERIRQVESKALEKLKNCTQT 562

Query: 163  EGLEAYVNLL 134
            +GLE Y  LL
Sbjct: 563  QGLEVYAELL 572


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  503 bits (1296), Expect = e-139
 Identities = 284/566 (50%), Positives = 370/566 (65%), Gaps = 13/566 (2%)
 Frame = -1

Query: 1789 SSSVPIIHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITEVKE------TLD 1628
            SSSV + HEQA P    +  TS+ARHFP   L QEQ DD+RP   +   KE        D
Sbjct: 29   SSSVLMFHEQAAPAATSIPITSVARHFPTSVLLQEQRDDYRPLPVLHFFKEDKAYPGATD 88

Query: 1627 WRRMNNDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLAT 1448
             +++ N  S+ +E  S  + Q    FE++ L WP L  L S   +E      S+ +S+A 
Sbjct: 89   KQQIENGASLNEENASNNFGQL--GFEKKLLQWPDLTQLLSLLESEENPSSTSNMQSVAA 146

Query: 1447 ENAKTVGTKP------IKQSSSKSMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXX 1286
            +  + V  +P       K++ S S +   + +                            
Sbjct: 147  DTKEIVDVEPSNIVALAKKALSASKQAASLSEDLKLDLDDSLSNSLGSANSCT------- 199

Query: 1285 XXXXXXXXXXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDPSLRMTDRDR 1106
                           +P+E+E  V                  PKV +    S R TD  R
Sbjct: 200  ---------------LPVEKEEVVTVRSTRRLERQSKRRRVQPKVTIRETYSSRRTDVRR 244

Query: 1105 KISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPT 926
            K+S + FDP+DPLRLFLWGPETK+LLTAKEE +LS ++Q LM+LE+VK KLQ QFGREPT
Sbjct: 245  KLS-EGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSKLQSQFGREPT 303

Query: 925  LVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSM 746
            LVEWAEA+G+ C  LQ+ LHSGNSSR+K+IYAN R+VVH+AKQ+Q+RGLSLQDLLQEGSM
Sbjct: 304  LVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLSLQDLLQEGSM 363

Query: 745  GLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLF 566
            GLMKS+E+FKP+VGCRF+TY+YWWIRQTIR++I+Q+SR +RLPENV+ LL+++ + ++ +
Sbjct: 364  GLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLLSKVLDAKKSY 423

Query: 565  IQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEI 389
            I+EG H P+ EELARRVGI VEKL+ +L + R P+SMQQSVW D+ +TFQE+T D   EI
Sbjct: 424  IREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQEVTPDTGIEI 483

Query: 388  PEISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQ 209
            P++S  KQLMR+HVRNLL VLSPRER II+LRFGI++  +  +LS IG+MFGLSKERVRQ
Sbjct: 484  PDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKE-NSLSEIGNMFGLSKERVRQ 542

Query: 208  LESRALDKLKNHLSSEGLEAYVNLLI 131
            LESRAL KLK  L+  GL AYV+LL+
Sbjct: 543  LESRALYKLKQCLNKHGLGAYVDLLV 568


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  496 bits (1276), Expect = e-137
 Identities = 276/561 (49%), Positives = 362/561 (64%), Gaps = 5/561 (0%)
 Frame = -1

Query: 1798 TSLSSSVPIIHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITEVKETL---- 1631
            +S SSSV + +EQ+ P V  + T+S+ARHFP   L QEQ D++RP LH+ +  +T     
Sbjct: 30   SSSSSSVLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATS 89

Query: 1630 DWRRMNNDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLA 1451
            D R M  +    +EK S    Q ++  E QFL+WP LW LS P        +  + +SL+
Sbjct: 90   DSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLS 149

Query: 1450 TENAKTVGTKPIKQSSSKSMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXX 1271
             +  ++V  +           P+D +                                  
Sbjct: 150  NDTEESVDAE-----------PFDAV-------ALARKALSASKEAASLAENPKLNGAEF 191

Query: 1270 XXXXXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDPSLRMTDRDRKISSK 1091
                    +  P+EE  TV              + K PKV  H   + R     +K+S +
Sbjct: 192  TDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSK-PKVTNHETYNSRKASVKKKLS-E 249

Query: 1090 NFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWA 911
             FD +DPLRLFLWGPET++LLTA EEF+L  +IQ+L++LE+ K KLQ QFGREPTL+EWA
Sbjct: 250  GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309

Query: 910  EAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKS 731
            +A+G++CRDL+S LHSGNSSREK+I AN RLVVHVAKQ+Q RG+ L DLLQEGSMGLMKS
Sbjct: 310  KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKS 369

Query: 730  LEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEG- 554
            +EKFKP+ GCRF++Y+YWW+RQTIR+AI Q+SR IRLPEN+Y LL+++   +RL+IQEG 
Sbjct: 370  VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGN 429

Query: 553  HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISA 374
            H P  E+LARRVGI VEKLE ++   R P+SMQQ VW D+  TFQEITAD   EIP+IS 
Sbjct: 430  HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 489

Query: 373  TKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRA 194
             KQLMR+HVRNLL +L+P+ER I+RLRFGI+D G+ K+LS +G++FGLSKERVRQLESRA
Sbjct: 490  QKQLMRQHVRNLLTLLNPKERCIVRLRFGIED-GKPKSLSEVGNIFGLSKERVRQLESRA 548

Query: 193  LDKLKNHLSSEGLEAYVNLLI 131
            L +LK  L  +    Y +LLI
Sbjct: 549  LYRLKQSLGGKASYGYADLLI 569


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  494 bits (1273), Expect = e-137
 Identities = 275/561 (49%), Positives = 362/561 (64%), Gaps = 5/561 (0%)
 Frame = -1

Query: 1798 TSLSSSVPIIHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITEVKETL---- 1631
            +S SS+V + +EQ+ P V  + T+S+ARHFP   L QEQ D++RP LH+ +  +T     
Sbjct: 31   SSSSSAVLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATS 90

Query: 1630 DWRRMNNDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLA 1451
            D R M  +    +EK S    Q ++  E QFL+WP LW LS P        +  + +SL+
Sbjct: 91   DSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLS 150

Query: 1450 TENAKTVGTKPIKQSSSKSMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXX 1271
             +  ++V  +           P+D +                                  
Sbjct: 151  NDTEESVDAE-----------PFDAV-------ALARKALSASKEAASLAENPKLNGAEF 192

Query: 1270 XXXXXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDPSLRMTDRDRKISSK 1091
                    +  P+EE  TV              + K PKV  H   + R     +K+S +
Sbjct: 193  TDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSK-PKVTNHETYNSRKASVKKKLS-E 250

Query: 1090 NFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWA 911
             FD +DPLRLFLWGPET++LLTA EEF+L  +IQ+L++LE+ K KLQ QFGREPTL+EWA
Sbjct: 251  GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 310

Query: 910  EAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKS 731
            +A+G++CRDL+S LHSGNSSREK+I AN RLVVHVAKQ+Q RG+ L DLLQEGSMGLMKS
Sbjct: 311  KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKS 370

Query: 730  LEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEG- 554
            +EKFKP+ GCRF++Y+YWW+RQTIR+AI Q+SR IRLPEN+Y LL+++   +RL+IQEG 
Sbjct: 371  VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGN 430

Query: 553  HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISA 374
            H P  E+LARRVGI VEKLE ++   R P+SMQQ VW D+  TFQEITAD   EIP+IS 
Sbjct: 431  HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 490

Query: 373  TKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRA 194
             KQLMR+HVRNLL +L+P+ER I+RLRFGI+D G+ K+LS +G++FGLSKERVRQLESRA
Sbjct: 491  QKQLMRQHVRNLLTLLNPKERCIVRLRFGIED-GKPKSLSEVGNIFGLSKERVRQLESRA 549

Query: 193  LDKLKNHLSSEGLEAYVNLLI 131
            L +LK  L  +    Y +LLI
Sbjct: 550  LYRLKQSLGGKASYGYADLLI 570


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  491 bits (1265), Expect = e-136
 Identities = 274/560 (48%), Positives = 357/560 (63%), Gaps = 5/560 (0%)
 Frame = -1

Query: 1795 SLSSSVPIIHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITEVKETL----D 1628
            SLSSS       + P V  + T+S+ARHFP   L QEQ D++RP LH+ +  +T     D
Sbjct: 23   SLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSD 82

Query: 1627 WRRMNNDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLAT 1448
             R M  +    +EK S    Q ++  E QFL+WP LW LS P        +  + +SL+ 
Sbjct: 83   SRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSN 142

Query: 1447 ENAKTVGTKPIKQSSSKSMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXX 1268
            +  ++V  +           P+D +                                   
Sbjct: 143  DTEESVDAE-----------PFDAV-------ALARKALSASKEAASLAENPKLNGAEFT 184

Query: 1267 XXXXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDPSLRMTDRDRKISSKN 1088
                   +  P+EE  TV              + K PKV  H   + R     +K+S + 
Sbjct: 185  DISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSK-PKVTNHETYNSRKASVKKKLS-EG 242

Query: 1087 FDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWAE 908
            FD +DPLRLFLWGPET++LLTA EEF+L  +IQ+L++LE+ K KLQ QFGREPTL+EWA+
Sbjct: 243  FDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAK 302

Query: 907  AVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSL 728
            A+G++CRDL+S LHSGNSSREK+I AN RLVVHVAKQ+Q RG+ L DLLQEGSMGLMKS+
Sbjct: 303  AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSV 362

Query: 727  EKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEG-H 551
            EKFKP+ GCRF++Y+YWW+RQTIR+AI Q+SR IRLPEN+Y LL+++   +RL+IQEG H
Sbjct: 363  EKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNH 422

Query: 550  QPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISAT 371
             P  E+LARRVGI VEKLE ++   R P+SMQQ VW D+  TFQEITAD   EIP+IS  
Sbjct: 423  SPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQ 482

Query: 370  KQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRAL 191
            KQLMR+HVRNLL +L+P+ER I+RLRFGI+D G+ K+LS +G++FGLSKERVRQLESRAL
Sbjct: 483  KQLMRQHVRNLLTLLNPKERCIVRLRFGIED-GKPKSLSEVGNIFGLSKERVRQLESRAL 541

Query: 190  DKLKNHLSSEGLEAYVNLLI 131
             +LK  L  +    Y +LLI
Sbjct: 542  YRLKQSLGGKASYGYADLLI 561


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Vitis
            vinifera]
          Length = 567

 Score =  491 bits (1264), Expect = e-136
 Identities = 281/558 (50%), Positives = 359/558 (64%), Gaps = 5/558 (0%)
 Frame = -1

Query: 1789 SSSVPIIHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITE----VKETLDWR 1622
            SSSV ++H+Q  P V  + TT IAR FP   L QEQ D++RP     +     + TL+ R
Sbjct: 30   SSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKR 88

Query: 1621 RMNNDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLATEN 1442
            +M   VS   E+ S  ++QY+  FERQ L  PGLWY    S T  K    SS     T +
Sbjct: 89   QMEIVVSA-DEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTD 147

Query: 1441 AKTVGTKPIKQSSSKSMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXX 1262
             +          +S  ++P DVL                                     
Sbjct: 148  IE----------NSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGA 197

Query: 1261 XXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDPSLRMTDRDRKISSKNFD 1082
                ++  P+EE+                   + PKV +H +   R  +  RKI+ + +D
Sbjct: 198  ISSPNL--PLEEKTV----RSTRLLERRSKKRRNPKVAVHENHGSRRAEVQRKIN-EGYD 250

Query: 1081 PSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWAEAV 902
            P DPLRLFLWGPET++LLTAKEE +L V+IQELM+LEEVK++LQ    REPT+VEWAEAV
Sbjct: 251  PKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAV 310

Query: 901  GMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEK 722
            G++C+ LQS LHSGN SR+K+IYAN R+VVH+AKQ+Q RGL+LQDLLQEGSMGLM S+EK
Sbjct: 311  GLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEK 370

Query: 721  FKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEG-HQP 545
            FKP  GCRF++Y+YWWIRQ +R+AI Q+SR IRLPEN+Y+LL +++  +RLFIQEG H P
Sbjct: 371  FKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDP 430

Query: 544  TNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQ 365
            T EE+A RVGI +EKL+ +L   R P+SMQQ VW D+  TFQE+TAD   EIP++S  KQ
Sbjct: 431  TKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQ 490

Query: 364  LMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDK 185
            LMR+HVRNLL VL+P+ER+IIRLRFGI D G  +TLS IG +FG SKERVRQLE RAL K
Sbjct: 491  LMRQHVRNLLHVLTPKERRIIRLRFGIGD-GIPRTLSEIGLVFGFSKERVRQLEQRALHK 549

Query: 184  LKNHLSSEGLEAYVNLLI 131
            LK  LSS GLE+Y +LL+
Sbjct: 550  LKQCLSSHGLESYTDLLV 567


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  491 bits (1264), Expect = e-136
 Identities = 281/558 (50%), Positives = 359/558 (64%), Gaps = 5/558 (0%)
 Frame = -1

Query: 1789 SSSVPIIHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITE----VKETLDWR 1622
            SSSV ++H+Q  P V  + TT IAR FP   L QEQ D++RP     +     + TL+ R
Sbjct: 24   SSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKR 82

Query: 1621 RMNNDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLATEN 1442
            +M   VS   E+ S  ++QY+  FERQ L  PGLWY    S T  K    SS     T +
Sbjct: 83   QMEIVVSA-DEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTD 141

Query: 1441 AKTVGTKPIKQSSSKSMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXX 1262
             +          +S  ++P DVL                                     
Sbjct: 142  IE----------NSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGA 191

Query: 1261 XXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDPSLRMTDRDRKISSKNFD 1082
                ++  P+EE+                   + PKV +H +   R  +  RKI+ + +D
Sbjct: 192  ISSPNL--PLEEKTV----RSTRLLERRSKKRRNPKVAVHENHGSRRAEVQRKIN-EGYD 244

Query: 1081 PSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWAEAV 902
            P DPLRLFLWGPET++LLTAKEE +L V+IQELM+LEEVK++LQ    REPT+VEWAEAV
Sbjct: 245  PKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAV 304

Query: 901  GMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEK 722
            G++C+ LQS LHSGN SR+K+IYAN R+VVH+AKQ+Q RGL+LQDLLQEGSMGLM S+EK
Sbjct: 305  GLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEK 364

Query: 721  FKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEG-HQP 545
            FKP  GCRF++Y+YWWIRQ +R+AI Q+SR IRLPEN+Y+LL +++  +RLFIQEG H P
Sbjct: 365  FKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDP 424

Query: 544  TNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQ 365
            T EE+A RVGI +EKL+ +L   R P+SMQQ VW D+  TFQE+TAD   EIP++S  KQ
Sbjct: 425  TKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQ 484

Query: 364  LMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDK 185
            LMR+HVRNLL VL+P+ER+IIRLRFGI D G  +TLS IG +FG SKERVRQLE RAL K
Sbjct: 485  LMRQHVRNLLHVLTPKERRIIRLRFGIGD-GIPRTLSEIGLVFGFSKERVRQLEQRALHK 543

Query: 184  LKNHLSSEGLEAYVNLLI 131
            LK  LSS GLE+Y +LL+
Sbjct: 544  LKQCLSSHGLESYTDLLV 561


>ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Populus euphratica]
          Length = 557

 Score =  485 bits (1249), Expect = e-134
 Identities = 280/561 (49%), Positives = 360/561 (64%), Gaps = 7/561 (1%)
 Frame = -1

Query: 1795 SLSSSVPIIHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITEV----KETLD 1628
            SL SSV I+ EQA P V  + TTS A+HFP   L QEQ D+FRP  +I +     + TLD
Sbjct: 23   SLCSSVLILREQATPAVTAIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRPSQATLD 82

Query: 1627 WRRMNNDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLAT 1448
             R+     S  + K S +  Q ++ FE Q  +WP  W L           LP S +    
Sbjct: 83   RRKTEIGTSGHEGKDSDELDQMVENFEYQLHHWPTYWNL-----------LPPSQKGQNP 131

Query: 1447 ENAKTVGTKPIKQSSSK--SMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXX 1274
              + T  T+ + +S+ K   + P DV++                                
Sbjct: 132  SMSFT--TQSVTRSTDKLIDVEPTDVINLAKRALSASKHAAFLADNSTDLDNLASTSSSS 189

Query: 1273 XXXXXXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDPSLRMTDRDRKISS 1094
                         +EE   V              +PKT  +      S +  D  +++S 
Sbjct: 190  FS-----------LEEVRIVRSRRHLARQSLNRRVPKTKDMIFETYDS-KSADVQKRLS- 236

Query: 1093 KNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEW 914
            + FDP+DPLRLFLWGPETK+LLTAKEEF+L  +IQ+LM LE VK +L+ QFGREPTLVEW
Sbjct: 237  QGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEW 296

Query: 913  AEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMK 734
            A+AVG++C  L+  LHSGN SREK+I AN R+VVH+AK++QNRGL LQDLLQEG++GLMK
Sbjct: 297  AQAVGLSCSVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMK 356

Query: 733  SLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEG 554
            S+EKFKP+ GCRF+TY+YWWIRQTI +AI Q+SR IRLPENVY LL ++   +R +IQEG
Sbjct: 357  SIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQEG 416

Query: 553  -HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEIS 377
             HQPT EE+ARRVGI ++KLE +L   R+P+SMQQ+VW D+  TFQEITAD E EIP++S
Sbjct: 417  NHQPTTEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEIPDVS 476

Query: 376  ATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESR 197
              KQLMR+H+R LL +LS +ER+IIRLRFGI+DG Q K+LS IG++FGLSKERVRQLESR
Sbjct: 477  VAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQ-KSLSEIGNVFGLSKERVRQLESR 535

Query: 196  ALDKLKNHLSSEGLEAYVNLL 134
            AL KLK  + S GL+AY +LL
Sbjct: 536  ALYKLKQCVGSHGLDAYADLL 556


>gb|AKC88770.1| sigma factor [Francoa sonchifolia]
          Length = 549

 Score =  478 bits (1230), Expect = e-132
 Identities = 277/556 (49%), Positives = 354/556 (63%), Gaps = 13/556 (2%)
 Frame = -1

Query: 1759 AGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITEVKET----LDWRRMNNDVSVCK 1592
            + P    M TTS+AR+FP   L +EQ +++R   HI + + T    LD R+M N     +
Sbjct: 21   SAPAATSMPTTSLARNFPTSVLLREQREEYRVLCHILKEERTSEATLDMRQMLN--GAVQ 78

Query: 1591 EKKSYQYHQYLKKFERQFLYWPGLWYL-------SSPSSTEVKQ-ILPSSTESLATENAK 1436
            E+ S    Q ++ FER+ L WPGLW +        SPSS+   Q + P++    +     
Sbjct: 79   EEISDNSDQLVQDFERRLLQWPGLWPIFPSLQTGGSPSSSLAMQPVTPTTDGEKSAGTES 138

Query: 1435 TVGTKPIKQSSSKSMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXX 1256
             +      +S S S +   +L+                                      
Sbjct: 139  CLAAALAMKSLSASKQAAPLLNESKLARVNGDGLPAPSLDPASL---------------- 182

Query: 1255 XXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDPSLRMTDRDRKISSKNFDPS 1076
               V VP+++   V                + PKV +H     R TD  RK SS+ FDP+
Sbjct: 183  ---VSVPLDKVRIVRSTRLLERRSKK----RVPKVGVHETFHSRRTDIKRK-SSEGFDPN 234

Query: 1075 DPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWAEAVGM 896
            DPLR+FLWGPETK+LLTAKEEF+L   IQ++MKLEEVK +L  QFG EPTL+EWAEA G+
Sbjct: 235  DPLRMFLWGPETKQLLTAKEEFELIDHIQDMMKLEEVKSRLLSQFGHEPTLIEWAEAAGI 294

Query: 895  NCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEKFK 716
            +CR LQS L + N SREK+I AN R+VVH+AKQ+  +GLS  DLLQEGSMGLMKS+EKFK
Sbjct: 295  SCRVLQSQLRTANKSREKLINANLRMVVHIAKQYLGKGLSFPDLLQEGSMGLMKSVEKFK 354

Query: 715  PEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEG-HQPTN 539
            P+ GCRF+TY+YWWIRQT+R+AI Q+SR IRLPENVY LL ++   ++  IQEG H+PT 
Sbjct: 355  PQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHRPTK 414

Query: 538  EELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQLM 359
            EELARRVGI VEKLE +L + R P+SMQQ VW  +  TFQEI AD E EIP+IS  KQ+M
Sbjct: 415  EELARRVGITVEKLEKLLYTTRMPLSMQQPVWAGQDTTFQEIIADTEIEIPDISVGKQMM 474

Query: 358  RRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDKLK 179
            R+HVRNLL +LSP+ER+IIRLRFGI+DG Q K+LS IG +FGLSKERVRQLESRAL +LK
Sbjct: 475  RQHVRNLLSILSPKERRIIRLRFGIEDGKQ-KSLSEIGAVFGLSKERVRQLESRALYRLK 533

Query: 178  NHLSSEGLEAYVNLLI 131
              LSS+GL AY +LL+
Sbjct: 534  QCLSSQGLGAYTDLLV 549


>ref|XP_008359645.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor sigF,
            chloroplastic-like [Malus domestica]
          Length = 571

 Score =  477 bits (1227), Expect = e-131
 Identities = 280/565 (49%), Positives = 358/565 (63%), Gaps = 9/565 (1%)
 Frame = -1

Query: 1798 TSLSSSVPIIHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITEVKET----L 1631
            +S S+SV ++HEQA P V  +  T +ARHFP   L QEQ D+F+P LH  + ++T    L
Sbjct: 30   SSSSTSVLMLHEQATPAVTSVPITFVARHFPTSVLLQEQRDEFKPLLHALKEEKTSQATL 89

Query: 1630 DWRRMNNDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLA 1451
            D  ++    S+ ++ K   ++Q +K  E Q L   GL  + S   T VK           
Sbjct: 90   DRMQIEARASLNEDLKIDGFYQLVKDSEHQLLNRSGLLDVFSSLQTRVK----------- 138

Query: 1450 TENAKTVGTKPIKQSSSKSM--RPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXX 1277
              ++  +  +PI  +SSK M  +P D +                                
Sbjct: 139  --SSALLTMEPITTASSKHMDIKPSDAVALAKKALSASKEAVSFAEDSKSMGDXLMTVSE 196

Query: 1276 XXXXXXXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPK--VDLHGDPSLRMTDRDRK 1103
                          +E+E TV                +  K  V +H       +D  +K
Sbjct: 197  GLDNWL--------VEDEKTVRSARLLERRRRRLKKKRVSKSKVLIHETNGPTSSDVRKK 248

Query: 1102 ISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTL 923
            I+ +  +P+DPLRLFLWGPETK+LLTAKEE +L  ++Q+L KLEEVK +LQ QFGREPTL
Sbjct: 249  IN-EGLNPNDPLRLFLWGPETKQLLTAKEEAELIAQVQDLFKLEEVKSRLQSQFGREPTL 307

Query: 922  VEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMG 743
            VEWAEAVG++C+ L+S L SG SSREK+IYAN R+VVH+AKQ+Q RGL LQDL+QEGSMG
Sbjct: 308  VEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMG 367

Query: 742  LMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFI 563
            LMKS+EKFKP+ GCRF+TY+YWWIRQT+R+AI Q+SR IRLPENVY LL ++   ++  I
Sbjct: 368  LMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCI 427

Query: 562  QEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIP 386
            QEG H P  EELARRVGI VEKL+ +L S R P+SMQQ VW D+  TFQEITAD   EIP
Sbjct: 428  QEGNHNPNKEELARRVGITVEKLQKLLYSTRMPLSMQQPVWADQDTTFQEITADTGTEIP 487

Query: 385  EISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQL 206
             +S  KQLMR+HVR+LL +L+ RERQIIRLRFGI+DG Q ++LS IG+MFGLSKERVRQL
Sbjct: 488  HVSVEKQLMRQHVRHLLGILNLRERQIIRLRFGIEDGKQ-RSLSEIGNMFGLSKERVRQL 546

Query: 205  ESRALDKLKNHLSSEGLEAYVNLLI 131
            ESRA  KLK  L S+GL AY  LL+
Sbjct: 547  ESRAFLKLKQSLGSQGLGAYGPLLV 571


>ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Populus euphratica] gi|743810385|ref|XP_011018729.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic isoform X1 [Populus euphratica]
            gi|743810387|ref|XP_011018730.1| PREDICTED: RNA
            polymerase sigma factor sigF, chloroplastic isoform X1
            [Populus euphratica]
          Length = 570

 Score =  476 bits (1226), Expect = e-131
 Identities = 279/574 (48%), Positives = 363/574 (63%), Gaps = 20/574 (3%)
 Frame = -1

Query: 1795 SLSSSVPIIHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITEV----KETLD 1628
            SL SSV I+ EQA P V  + TTS A+HFP   L QEQ D+FRP  +I +     + TLD
Sbjct: 23   SLCSSVLILREQATPAVTAIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRPSQATLD 82

Query: 1627 WRRM-----------NNDVSVC--KEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEV 1487
             R+            ++++     + K S +  Q ++ FE Q  +WP  W L        
Sbjct: 83   RRKTEIGTSGHEGKDSDEIGTSGHEGKDSDELDQMVENFEYQLHHWPTYWNL-------- 134

Query: 1486 KQILPSSTESLATENAKTVGTKPIKQSSSK--SMRPWDVLDXXXXXXXXXXXXXXXXXXX 1313
               LP S +      + T  T+ + +S+ K   + P DV++                   
Sbjct: 135  ---LPPSQKGQNPSMSFT--TQSVTRSTDKLIDVEPTDVINLAKRALSASKHAAFLADNS 189

Query: 1312 XXXXXAXXXXXXXXXXXXXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDP 1133
                                      +EE   V              +PKT  +      
Sbjct: 190  TDLDNLASTSSSSFS-----------LEEVRIVRSRRHLARQSLNRRVPKTKDMIFETYD 238

Query: 1132 SLRMTDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKL 953
            S +  D  +++S + FDP+DPLRLFLWGPETK+LLTAKEEF+L  +IQ+LM LE VK +L
Sbjct: 239  S-KSADVQKRLS-QGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRL 296

Query: 952  QLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSL 773
            + QFGREPTLVEWA+AVG++C  L+  LHSGN SREK+I AN R+VVH+AK++QNRGL L
Sbjct: 297  ESQFGREPTLVEWAQAVGLSCSVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGL 356

Query: 772  QDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLT 593
            QDLLQEG++GLMKS+EKFKP+ GCRF+TY+YWWIRQTI +AI Q+SR IRLPENVY LL 
Sbjct: 357  QDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLG 416

Query: 592  QIRNVRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQE 416
            ++   +R +IQEG HQPT EE+ARRVGI ++KLE +L   R+P+SMQQ+VW D+  TFQE
Sbjct: 417  KVMEAKRSYIQEGNHQPTTEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQE 476

Query: 415  ITADPEAEIPEISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMF 236
            ITAD E EIP++S  KQLMR+H+R LL +LS +ER+IIRLRFGI+DG Q K+LS IG++F
Sbjct: 477  ITADTEIEIPDVSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQ-KSLSEIGNVF 535

Query: 235  GLSKERVRQLESRALDKLKNHLSSEGLEAYVNLL 134
            GLSKERVRQLESRAL KLK  + S GL+AY +LL
Sbjct: 536  GLSKERVRQLESRALYKLKQCVGSHGLDAYADLL 569


>ref|XP_009384040.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Musa
            acuminata subsp. malaccensis]
          Length = 577

 Score =  474 bits (1220), Expect = e-130
 Identities = 268/561 (47%), Positives = 357/561 (63%), Gaps = 5/561 (0%)
 Frame = -1

Query: 1798 TSLSSSVPIIHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITEVKETL---- 1631
            T  ++SVP++ +QA   ++ +  T +  H  A  L +EQCDD + + H+ +V++++    
Sbjct: 23   TPYTNSVPMLLDQASQPMIHVPATQVVHHITASVLSKEQCDDLKTN-HLNKVEKSVQATP 81

Query: 1630 DWRRMNNDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLA 1451
            D        S  +E++ ++++QYL+  E Q  Y P LWY   P   E KQ LP S     
Sbjct: 82   DKWLTEAGRSCSEEREKHEFNQYLRYLECQLSYQPSLWYPFPPLDEE-KQSLPVSVGPEE 140

Query: 1450 TENAKTVGTKPIKQSSSKS-MRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXX 1274
            T    +  +  ++  ++K  + P DVL                                 
Sbjct: 141  TSTCVSGDSSAMQVENTKDCITPADVLALAKKAMIASKIAASLVEQSNILGIEVDKSNFL 200

Query: 1273 XXXXXXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDPSLRMTDRDRKISS 1094
                    D     +EE TV              + K P   +H   S    ++ +KI  
Sbjct: 201  GFDEGSNDDTF--FKEETTVRSRKLLERRSKKRKVSKNPNNFVHHGASSVTINQSKKID- 257

Query: 1093 KNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEW 914
            K  D +DPLRLFLWGPETK+LLT KEE DL VKI++LM+LEEVK++LQ Q  REPTL EW
Sbjct: 258  KRLDSNDPLRLFLWGPETKQLLTVKEEKDLFVKIEDLMRLEEVKERLQSQSDREPTLAEW 317

Query: 913  AEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMK 734
            A+AVGM+C+DLQSCL SG  +REKMIYAN RLVVHVA+Q++ +GL++QDLLQEGS GLMK
Sbjct: 318  AQAVGMSCQDLQSCLSSGRRNREKMIYANFRLVVHVARQYEGKGLNIQDLLQEGSRGLMK 377

Query: 733  SLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEG 554
            SLEKFKP  GCRF TY+YWWIRQ+I++AI +NSR IRLPEN +A L  IR  RRL IQEG
Sbjct: 378  SLEKFKPRAGCRFPTYAYWWIRQSIKKAIFKNSRTIRLPENAFARLKSIREARRLCIQEG 437

Query: 553  HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISA 374
              PTNEE+A+RVGI V+KLE++L ++R P+S+Q+  W D+ VTFQE  ADP+ EIP++  
Sbjct: 438  LLPTNEEIAKRVGITVQKLEILLLNSRYPISIQRHPWLDQDVTFQETVADPKIEIPDLVI 497

Query: 373  TKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRA 194
             KQ+MR+HVRNLL +L PRER I++ RFGI+   Q K+LS IG M+GLSKERVRQLES+A
Sbjct: 498  AKQMMRQHVRNLLNILKPRERVIVQYRFGIRCSEQ-KSLSEIGAMYGLSKERVRQLESQA 556

Query: 193  LDKLKNHLSSEGLEAYVNLLI 131
            L KL+  L S+GLEAY++LLI
Sbjct: 557  LGKLRKCLQSQGLEAYLDLLI 577


>ref|XP_009376812.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Pyrus x bretschneideri]
          Length = 573

 Score =  474 bits (1219), Expect = e-130
 Identities = 281/565 (49%), Positives = 356/565 (63%), Gaps = 9/565 (1%)
 Frame = -1

Query: 1798 TSLSSSVPIIHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITEVKET----L 1631
            +S S+SV ++HEQA   V  +  T +ARHFP   L QEQ D+F+P LH  + ++T    L
Sbjct: 31   SSSSTSVLMLHEQATAAVPSVPITFVARHFPTSVLLQEQRDEFKPLLHALKEEKTSQATL 90

Query: 1630 DWRRMNNDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLA 1451
            D  ++    S+ ++     ++Q +K  E Q L   GL  + S   T VK   P + E   
Sbjct: 91   DRMQIETKASLNEDLDIDGFYQLVKDSEHQLLNRSGLLDVFSSLQTGVKLSAPLTVE--- 147

Query: 1450 TENAKTVGTKPIKQSSSKSM--RPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXX 1277
                      PI  +SSK M  +P D +                                
Sbjct: 148  ----------PITTASSKHMDIKPSDAVALAKKALSASKEAVSFADGSKSMGYDFDDSLS 197

Query: 1276 XXXXXXXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPK--VDLHGDPSLRMTDRDRK 1103
                          +E+E TV                +  K  V +H   S   +D  RK
Sbjct: 198  IGLDNWL-------VEDEKTVRSTRLLERRRKRLKKKRVSKSKVLIHETNSPPSSDVRRK 250

Query: 1102 ISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTL 923
            I+ + F+ +DPLRLFLWGPETK+LLTA+EE +L  ++Q+L KLEEVK +LQ QFGREPTL
Sbjct: 251  IN-EGFNQNDPLRLFLWGPETKQLLTAEEEAELIARVQDLFKLEEVKNRLQSQFGREPTL 309

Query: 922  VEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMG 743
            VEWAEAVG++C+ L+S L SG SSREK+IYAN R+VVH+AKQ+Q RGL LQDL+QEGSMG
Sbjct: 310  VEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMG 369

Query: 742  LMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFI 563
            LMKS+EKFKP+ GCRF+TY+YWWIRQT+R+AI Q+SR IRLPENVY LL ++   ++  I
Sbjct: 370  LMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCI 429

Query: 562  QEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIP 386
            QEG H P  EELARRVGI VEKL+ +L S R P+SMQQ VW D+  TFQEITAD   EIP
Sbjct: 430  QEGNHNPNKEELARRVGITVEKLQKLLYSTRMPLSMQQPVWADQDSTFQEITADTGTEIP 489

Query: 385  EISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQL 206
             +S  KQLMR+HVR+LL +L+ RERQIIRLRFGI+DG Q ++LS IG+MFGLSKERVRQL
Sbjct: 490  HVSVEKQLMRQHVRHLLGILNLRERQIIRLRFGIEDGKQ-RSLSEIGNMFGLSKERVRQL 548

Query: 205  ESRALDKLKNHLSSEGLEAYVNLLI 131
            ESRA  KLK  L S+GL AY  LL+
Sbjct: 549  ESRAFLKLKQSLGSQGLGAYGPLLV 573


>ref|XP_009376811.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Pyrus x bretschneideri]
          Length = 610

 Score =  471 bits (1213), Expect = e-130
 Identities = 280/564 (49%), Positives = 354/564 (62%), Gaps = 9/564 (1%)
 Frame = -1

Query: 1795 SLSSSVPIIHEQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPSLHITEVKET----LD 1628
            SL+  V ++HEQA   V  +  T +ARHFP   L QEQ D+F+P LH  + ++T    LD
Sbjct: 69   SLACIVLMLHEQATAAVPSVPITFVARHFPTSVLLQEQRDEFKPLLHALKEEKTSQATLD 128

Query: 1627 WRRMNNDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLAT 1448
              ++    S+ ++     ++Q +K  E Q L   GL  + S   T VK   P + E    
Sbjct: 129  RMQIETKASLNEDLDIDGFYQLVKDSEHQLLNRSGLLDVFSSLQTGVKLSAPLTVE---- 184

Query: 1447 ENAKTVGTKPIKQSSSKSM--RPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXX 1274
                     PI  +SSK M  +P D +                                 
Sbjct: 185  ---------PITTASSKHMDIKPSDAVALAKKALSASKEAVSFADGSKSMGYDFDDSLSI 235

Query: 1273 XXXXXXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPK--VDLHGDPSLRMTDRDRKI 1100
                         +E+E TV                +  K  V +H   S   +D  RKI
Sbjct: 236  GLDNWL-------VEDEKTVRSTRLLERRRKRLKKKRVSKSKVLIHETNSPPSSDVRRKI 288

Query: 1099 SSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLV 920
            + + F+ +DPLRLFLWGPETK+LLTA+EE +L  ++Q+L KLEEVK +LQ QFGREPTLV
Sbjct: 289  N-EGFNQNDPLRLFLWGPETKQLLTAEEEAELIARVQDLFKLEEVKNRLQSQFGREPTLV 347

Query: 919  EWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGL 740
            EWAEAVG++C+ L+S L SG SSREK+IYAN R+VVH+AKQ+Q RGL LQDL+QEGSMGL
Sbjct: 348  EWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGL 407

Query: 739  MKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQ 560
            MKS+EKFKP+ GCRF+TY+YWWIRQT+R+AI Q+SR IRLPENVY LL ++   ++  IQ
Sbjct: 408  MKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQ 467

Query: 559  EG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPE 383
            EG H P  EELARRVGI VEKL+ +L S R P+SMQQ VW D+  TFQEITAD   EIP 
Sbjct: 468  EGNHNPNKEELARRVGITVEKLQKLLYSTRMPLSMQQPVWADQDSTFQEITADTGTEIPH 527

Query: 382  ISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLE 203
            +S  KQLMR+HVR+LL +L+ RERQIIRLRFGI+DG Q ++LS IG+MFGLSKERVRQLE
Sbjct: 528  VSVEKQLMRQHVRHLLGILNLRERQIIRLRFGIEDGKQ-RSLSEIGNMFGLSKERVRQLE 586

Query: 202  SRALDKLKNHLSSEGLEAYVNLLI 131
            SRA  KLK  L S+GL AY  LL+
Sbjct: 587  SRAFLKLKQSLGSQGLGAYGPLLV 610


>ref|XP_012443171.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Gossypium raimondii]
          Length = 572

 Score =  463 bits (1192), Expect = e-127
 Identities = 280/573 (48%), Positives = 359/573 (62%), Gaps = 21/573 (3%)
 Frame = -1

Query: 1786 SSVPIIH-EQAGPVVMPMQTTSIARHFPALALCQEQCDDFRPS--LHI---------TEV 1643
            SSV + H EQA P    +  TS+ARHFP   L QEQ DD+RP   LH+         T +
Sbjct: 30   SSVALFHHEQAVPAATSIPITSVARHFPTSVLSQEQRDDYRPLPVLHLLKEDKAYSFTLL 89

Query: 1642 KETLDWRRMNNDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYL-------SSPSSTEVK 1484
            +   D  R+ N  ++ +EK S    Q  ++FE+Q L WP L  L        +PSS+   
Sbjct: 90   QRETDKLRIGNGPTLQEEKASDNIGQ--QEFEQQLLQWPDLRQLLALLELGENPSSSLNM 147

Query: 1483 QILPSSTESLATENAKTVG-TKPIKQSSSKSMRPWDVLDXXXXXXXXXXXXXXXXXXXXX 1307
              + + TE++  E +  V   K    +S K+    + L+                     
Sbjct: 148  LSVAADTETMTLEPSNVVALAKKALSASKKAASLAEGLELELDDSLSNSLGSVDSST--- 204

Query: 1306 XXXAXXXXXXXXXXXXXXXDVMVPIEEEATVXXXXXXXXXXXXXXLPKTPKVDLHGDPSL 1127
                                  +P+EE A                  + PKV +    S 
Sbjct: 205  ----------------------LPVEEIAVAVRSTKRLERQSKRRRVQ-PKVVICETYSS 241

Query: 1126 RMTDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQL 947
            R  D  RK SSK  DP+DPLRLFLWGPETK+LLTA+EE  L +++Q+L +L + K KLQ 
Sbjct: 242  RRKDVRRK-SSKGSDPNDPLRLFLWGPETKQLLTAEEESVLIIQVQDLKRLVKEKSKLQS 300

Query: 946  QFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQD 767
            QFGREPTLVEWAEA+G++C  LQ+ L SG  SREK+I+AN R+VVH+AKQ+Q RGLSLQD
Sbjct: 301  QFGREPTLVEWAEAMGLSCSALQAELQSGKRSREKLIHANLRMVVHIAKQYQGRGLSLQD 360

Query: 766  LLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQI 587
            LLQEGSMGLMKS+EKFKP+VGCRF+TY+YWWIRQTI ++I+Q+SR IRLPENVY LL+++
Sbjct: 361  LLQEGSMGLMKSVEKFKPQVGCRFATYAYWWIRQTITKSIMQHSRTIRLPENVYGLLSKV 420

Query: 586  RNVRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEIT 410
             + +R   QEG H P+ EELARRVGI VEKL+ +L S+R P+SMQQ VW D+  TFQE+T
Sbjct: 421  LDAKRSCFQEGNHYPSKEELARRVGITVEKLDKLLLSSRMPLSMQQPVWADQDTTFQEVT 480

Query: 409  ADPEAEIPEISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGL 230
             D   EIP++S  KQLMR+HVRNLL +LSP+ER+IIRLRFGI++  Q  +LS IG MF L
Sbjct: 481  PDTGIEIPDVSVAKQLMRQHVRNLLSILSPKERKIIRLRFGIEESKQ-NSLSEIGKMFRL 539

Query: 229  SKERVRQLESRALDKLKNHLSSEGLEAYVNLLI 131
            SKERVRQLESRAL KLK  L  +GL AY +LL+
Sbjct: 540  SKERVRQLESRALYKLKQCLVKQGLGAYEDLLV 572