BLASTX nr result

ID: Cinnamomum24_contig00005971 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00005971
         (364 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010243710.1| PREDICTED: probable starch synthase 4, chlor...    58   3e-06
ref|XP_010275603.1| PREDICTED: probable starch synthase 4, chlor...    57   6e-06

>ref|XP_010243710.1| PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic
           isoform X2 [Nelumbo nucifera]
          Length = 1014

 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 29/82 (35%), Positives = 46/82 (56%)
 Frame = -3

Query: 248 LTLFVLGHGCHGLSSRQSNACLPFRSLIFPPISCKMRPRNFSSHNRRQQVKKAPRRNPPL 69
           L  F +G GC GL+ RQS++ LP  S     ISC+MR RN SS ++RQ+ K     + P 
Sbjct: 5   LPTFFVGPGCRGLNCRQSHSRLPLPSPRLLTISCRMRQRNLSSRHKRQRPKNVSPEHSPA 64

Query: 68  DANYPPREDEGADTEEAVTETV 3
           +      +DE  + + + T+++
Sbjct: 65  NIETQKNDDESNEIQVSSTDSI 86


>ref|XP_010275603.1| PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic
           [Nelumbo nucifera]
          Length = 1019

 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
 Frame = -3

Query: 248 LTLFVLGHGCHGLSSRQSNACLPFRSLIFPPISCKMRPRNFSS----HNRRQQVKKAPRR 81
           L+ F  G  CHGL+  + N  L  R     PI CKMRPRN SS    H R+Q+ K +P R
Sbjct: 5   LSTFFFGADCHGLNGNKFNTRLAVRYPRLLPIYCKMRPRNLSSQSSQHKRQQEKKFSPER 64

Query: 80  NPPLDANYPPREDEGAD----TEEAVTET 6
             P+D      +DE ++    TE  ++ T
Sbjct: 65  T-PMDGEIQSNDDESSEIQISTENRISNT 92


Top