BLASTX nr result
ID: Cinnamomum24_contig00005810
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum24_contig00005810
(362 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_011001571.1| PREDICTED: THO complex subunit 4C-like [Popu... 71 2e-10
ref|XP_010271270.1| PREDICTED: THO complex subunit 4D [Nelumbo n... 69 9e-10
ref|XP_006372570.1| hypothetical protein POPTR_0017s02890g [Popu... 69 1e-09
ref|XP_003600719.1| THO complex subunit [Medicago truncatula] gi... 66 1e-08
ref|XP_009387818.1| PREDICTED: THO complex subunit 4D-like [Musa... 65 1e-08
ref|XP_009399738.1| PREDICTED: THO complex subunit 4D-like [Musa... 64 4e-08
ref|XP_006655978.1| PREDICTED: THO complex subunit 4-like [Oryza... 63 7e-08
ref|XP_011007246.1| PREDICTED: LOW QUALITY PROTEIN: THO complex ... 62 1e-07
ref|XP_006384155.1| hypothetical protein POPTR_0004s08540g [Popu... 62 1e-07
ref|XP_006372569.1| RNA and export factor-binding family protein... 62 2e-07
ref|XP_012086408.1| PREDICTED: THO complex subunit 4D isoform X2... 60 4e-07
ref|XP_002531919.1| RNA and export factor binding protein, putat... 60 6e-07
ref|XP_004250178.1| PREDICTED: THO complex subunit 4D [Solanum l... 59 1e-06
ref|XP_008806219.1| PREDICTED: THO complex subunit 4D-like isofo... 59 2e-06
ref|XP_008806218.1| PREDICTED: THO complex subunit 4D-like isofo... 59 2e-06
ref|XP_006364627.1| PREDICTED: THO complex subunit 4-like isofor... 58 2e-06
ref|XP_010932904.1| PREDICTED: THO complex subunit 4D-like [Elae... 58 3e-06
ref|NP_001146734.1| uncharacterized protein LOC100280336 [Zea ma... 58 3e-06
gb|ACG35054.1| THO complex subunit 4 [Zea mays] 57 4e-06
gb|KGN57785.1| hypothetical protein Csa_3G302100 [Cucumis sativus] 57 5e-06
>ref|XP_011001571.1| PREDICTED: THO complex subunit 4C-like [Populus euphratica]
gi|743915246|ref|XP_011001572.1| PREDICTED: THO complex
subunit 4C-like [Populus euphratica]
gi|743915248|ref|XP_011001573.1| PREDICTED: THO complex
subunit 4C-like [Populus euphratica]
Length = 274
Score = 71.2 bits (173), Expect = 2e-10
Identities = 36/80 (45%), Positives = 47/80 (58%)
Frame = -1
Query: 242 STMGTSLDDNIKSRSNRARWDRRQDQRYGWGQRDTFGRGREAGTLRRGPLRVNPWLAPYA 63
+T+ SLDD IK R R R + G G +F GR +G +RRGPL VN W + Y+
Sbjct: 3 ATVDMSLDDIIKKNRERGRGRGRASRGRGHGPVRSFNNGRMSGAVRRGPLSVNTWPSKYS 62
Query: 62 NAKPFRRPKDLMWRHDLYED 3
AKP RR + L W+HDL +D
Sbjct: 63 IAKPSRRVRSLPWQHDLLKD 82
>ref|XP_010271270.1| PREDICTED: THO complex subunit 4D [Nelumbo nucifera]
Length = 266
Score = 69.3 bits (168), Expect = 9e-10
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = -1
Query: 242 STMGTSLDDNIKSRSNRARWDRRQDQRYGWGQRD-TFGRGREAGTLRRGPLRVNPWLAPY 66
+T+ +LDD IK+R+N R R R G GQ +FGRGR GT GPLRVN + Y
Sbjct: 3 NTLDMALDDIIKNRNNSERGRGRGRPRRGRGQGGGSFGRGRTTGT---GPLRVNARPSSY 59
Query: 65 ANAKPFRRPKDLMWRHDLYED 3
A AK + R KD W+HDL+ED
Sbjct: 60 AIAKSYSRTKDFSWKHDLFED 80
>ref|XP_006372570.1| hypothetical protein POPTR_0017s02890g [Populus trichocarpa]
gi|566210995|ref|XP_006372571.1| hypothetical protein
POPTR_0017s02890g [Populus trichocarpa]
gi|550319199|gb|ERP50367.1| hypothetical protein
POPTR_0017s02890g [Populus trichocarpa]
gi|550319200|gb|ERP50368.1| hypothetical protein
POPTR_0017s02890g [Populus trichocarpa]
Length = 284
Score = 68.9 bits (167), Expect = 1e-09
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = -1
Query: 242 STMGTSLDDNIKSRSNRARWDRRQDQRYGWGQRD--TFGRGREAGTLRRGPLRVNPWLAP 69
+T+ SLDD IK R R R + G G+ +F GR +G +RRGPL VN W +
Sbjct: 3 ATVDMSLDDIIKKNRERGRGRGRASRGRGRGRGPVRSFNNGRMSGAVRRGPLSVNTWPSK 62
Query: 68 YANAKPFRRPKDLMWRHDLYED 3
Y+ AKP RR + L W+HDL ED
Sbjct: 63 YSIAKPSRRVRSLPWQHDLLED 84
>ref|XP_003600719.1| THO complex subunit [Medicago truncatula]
gi|355489767|gb|AES70970.1| RNA recognition motif
[Medicago truncatula]
Length = 291
Score = 65.9 bits (159), Expect = 1e-08
Identities = 42/94 (44%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Frame = -1
Query: 242 STMGTSLDDNIKSRSNRARWDRRQDQRYGWGQRDTFGRGREAGTL--------------R 105
S++ SLDD IKSRSNR R R G G T G GR G + R
Sbjct: 3 SSLDISLDDRIKSRSNRGRGRGRGKALSGRGS-GTLGGGRRTGAVNGRRTSNGGRTGAVR 61
Query: 104 RGPLRVNPWLAPYANAKPFRRPKDLMWRHDLYED 3
RGPL VN + YA AK RRPK L W+ DL+ED
Sbjct: 62 RGPLNVNTRASSYAIAKSIRRPKTLAWQSDLFED 95
>ref|XP_009387818.1| PREDICTED: THO complex subunit 4D-like [Musa acuminata subsp.
malaccensis]
Length = 296
Score = 65.5 bits (158), Expect = 1e-08
Identities = 39/83 (46%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Frame = -1
Query: 242 STMGTSLDDNIKSRSNRARW---DRRQDQRYGWGQRDTFGRGREAGTLRRGPLRVNPWLA 72
++MG DD IK+R+ R R Q Q G G+ DTF RGR G L RG L VN +
Sbjct: 3 TSMGMPRDDLIKNRTANQRGRGRGRGQGQGRGHGRGDTF-RGRGMGMLHRGSLSVNMRPS 61
Query: 71 PYANAKPFRRPKDLMWRHDLYED 3
PY AK F R K ++WRHDL++D
Sbjct: 62 PYKIAKSFSRTKGMIWRHDLFDD 84
>ref|XP_009399738.1| PREDICTED: THO complex subunit 4D-like [Musa acuminata subsp.
malaccensis]
Length = 279
Score = 63.9 bits (154), Expect = 4e-08
Identities = 37/80 (46%), Positives = 50/80 (62%)
Frame = -1
Query: 242 STMGTSLDDNIKSRSNRARWDRRQDQRYGWGQRDTFGRGREAGTLRRGPLRVNPWLAPYA 63
+++ SLDD IK+R+ R R R G G+ +F RGR G L +G LRVN +PY
Sbjct: 3 TSLDMSLDDLIKNRTGSQRGRGRGPGR-GRGRGGSF-RGRGMGMLHQGSLRVNSRPSPYK 60
Query: 62 NAKPFRRPKDLMWRHDLYED 3
AK F R KD++WRHDL++D
Sbjct: 61 IAKSFSRTKDMIWRHDLFDD 80
>ref|XP_006655978.1| PREDICTED: THO complex subunit 4-like [Oryza brachyantha]
Length = 298
Score = 63.2 bits (152), Expect = 7e-08
Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 13/93 (13%)
Frame = -1
Query: 242 STMGTSLDDNIKSRSNRARWDRRQD---QRYGWGQRDTFG--RGREAGTLR--------R 102
+++ SLDD IK+RS+R R R + G GQR ++G RGR AGT R R
Sbjct: 3 TSLDMSLDDMIKNRSSRGRGRGRSQGGVRGRGDGQRFSYGSGRGRGAGTFRGRGVGVPSR 62
Query: 101 GPLRVNPWLAPYANAKPFRRPKDLMWRHDLYED 3
PL VN + YA AK F + KD++WR DL+ED
Sbjct: 63 RPLGVNTRSSSYAIAKSFNKSKDIVWRQDLFED 95
>ref|XP_011007246.1| PREDICTED: LOW QUALITY PROTEIN: THO complex subunit 4D-like
[Populus euphratica]
Length = 284
Score = 62.4 bits (150), Expect = 1e-07
Identities = 35/80 (43%), Positives = 43/80 (53%)
Frame = -1
Query: 242 STMGTSLDDNIKSRSNRARWDRRQDQRYGWGQRDTFGRGREAGTLRRGPLRVNPWLAPYA 63
+T+ SLDD IK R R R + G F GR +G +RRGPL VN Y+
Sbjct: 3 TTVDMSLDDIIKKNRERGRGRGRASRGRDRGPGRFFNNGRMSGAVRRGPLSVNARPPKYS 62
Query: 62 NAKPFRRPKDLMWRHDLYED 3
AKP RR + L W+HDL ED
Sbjct: 63 IAKPSRRIRSLPWQHDLLED 82
>ref|XP_006384155.1| hypothetical protein POPTR_0004s08540g [Populus trichocarpa]
gi|550340608|gb|ERP61952.1| hypothetical protein
POPTR_0004s08540g [Populus trichocarpa]
Length = 274
Score = 62.4 bits (150), Expect = 1e-07
Identities = 35/80 (43%), Positives = 43/80 (53%)
Frame = -1
Query: 242 STMGTSLDDNIKSRSNRARWDRRQDQRYGWGQRDTFGRGREAGTLRRGPLRVNPWLAPYA 63
+T+ SLDD IK R R R + G F GR +G +RRGPL VN Y+
Sbjct: 3 TTVDMSLDDIIKKNRERGRGRGRASRGRDRGPGRFFNNGRMSGAVRRGPLSVNARPPKYS 62
Query: 62 NAKPFRRPKDLMWRHDLYED 3
AKP RR + L W+HDL ED
Sbjct: 63 IAKPSRRIRSLPWQHDLLED 82
>ref|XP_006372569.1| RNA and export factor-binding family protein [Populus trichocarpa]
gi|550319198|gb|ERP50366.1| RNA and export
factor-binding family protein [Populus trichocarpa]
Length = 274
Score = 62.0 bits (149), Expect = 2e-07
Identities = 37/89 (41%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Frame = -1
Query: 242 STMGTSLDDNIKSRSNRARWDRRQDQRYGWGQRD--TFGRGREAGTLRRGPLRVNPWLAP 69
+T+ SLDD IK R R R + G G+ +F GR +G +RRGPL VN W +
Sbjct: 3 ATVDMSLDDIIKKNRERGRGRGRASRGRGRGRGPVRSFNNGRMSGAVRRGPLSVNTWPSK 62
Query: 68 YANAK-------PFRRPKDLMWRHDLYED 3
Y+ AK P RR + L W+HDL ED
Sbjct: 63 YSIAKASSKLWMPSRRVRSLPWQHDLLED 91
>ref|XP_012086408.1| PREDICTED: THO complex subunit 4D isoform X2 [Jatropha curcas]
gi|643712518|gb|KDP25779.1| hypothetical protein
JCGZ_22501 [Jatropha curcas]
Length = 278
Score = 60.5 bits (145), Expect = 4e-07
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = -1
Query: 242 STMGTSLDDNIKSRSNRARWD--RRQDQRYGWGQRDTFGRGREAGTLRRGPLRVNPWLAP 69
+++ SLDD IK R R R + G GQ TF GR G +R+GPL VN +
Sbjct: 3 TSVDMSLDDIIKKNRERGRGRGRTRPGRGRGRGQSGTFNGGRMTGVVRKGPLSVNARPSQ 62
Query: 68 YANAKPFRRPKDLMWRHDLYED 3
++ +KP RR ++L W+HDL ED
Sbjct: 63 FSISKPSRRIRNLPWQHDLLED 84
>ref|XP_002531919.1| RNA and export factor binding protein, putative [Ricinus communis]
gi|223528429|gb|EEF30463.1| RNA and export factor
binding protein, putative [Ricinus communis]
Length = 268
Score = 60.1 bits (144), Expect = 6e-07
Identities = 34/80 (42%), Positives = 48/80 (60%)
Frame = -1
Query: 242 STMGTSLDDNIKSRSNRARWDRRQDQRYGWGQRDTFGRGREAGTLRRGPLRVNPWLAPYA 63
+++ SLDD IK R R R + +R G G+ +F GR G R+GPL VN + ++
Sbjct: 3 TSVDMSLDDIIKKNRERGRGGRGRARR-GRGRGGSFSGGRMTGAGRKGPLSVNARPSQFS 61
Query: 62 NAKPFRRPKDLMWRHDLYED 3
AKP RR ++L W+HDL ED
Sbjct: 62 IAKPNRRIRNLPWQHDLLED 81
>ref|XP_004250178.1| PREDICTED: THO complex subunit 4D [Solanum lycopersicum]
Length = 283
Score = 58.9 bits (141), Expect = 1e-06
Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Frame = -1
Query: 245 LSTMGTSLDDNIKSRSNRARWDRRQDQ-RYGWG-----QRDTFGRGREAGTLRRGPLRVN 84
++++ +LDD IKSR N R R Q + R G G + +F GR G RRGPL VN
Sbjct: 1 MASLDMTLDDMIKSRRNTERGGRGQGRARRGRGAGGSFRGGSFRGGRTTGAPRRGPLGVN 60
Query: 83 PWLAPYANAKPFRRPKDLMWRHDLYED 3
+ Y AK FRR K+L W++ L+ED
Sbjct: 61 ARPSAYTIAKTFRRTKNLPWQNGLFED 87
>ref|XP_008806219.1| PREDICTED: THO complex subunit 4D-like isoform X2 [Phoenix
dactylifera]
Length = 235
Score = 58.5 bits (140), Expect = 2e-06
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = -1
Query: 227 SLDDNIKSRSNRARWDRRQDQRYGWGQ-RDTFGRGREAGTLRRGPLRVNPWLAPYANAKP 51
SLDD I+ + R + GWG+ R RGR +G L RGPL VN +PY AK
Sbjct: 2 SLDDLIRRSNGERGRGRGHGRGRGWGRGRGGTFRGRASGMLSRGPLGVNIRPSPYTVAKS 61
Query: 50 FRRPKDLMWRHDLYED 3
F + KD++ RHDL++D
Sbjct: 62 FSKAKDMIQRHDLFDD 77
>ref|XP_008806218.1| PREDICTED: THO complex subunit 4D-like isoform X1 [Phoenix
dactylifera]
Length = 270
Score = 58.5 bits (140), Expect = 2e-06
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = -1
Query: 227 SLDDNIKSRSNRARWDRRQDQRYGWGQ-RDTFGRGREAGTLRRGPLRVNPWLAPYANAKP 51
SLDD I+ + R + GWG+ R RGR +G L RGPL VN +PY AK
Sbjct: 2 SLDDLIRRSNGERGRGRGHGRGRGWGRGRGGTFRGRASGMLSRGPLGVNIRPSPYTVAKS 61
Query: 50 FRRPKDLMWRHDLYED 3
F + KD++ RHDL++D
Sbjct: 62 FSKAKDMIQRHDLFDD 77
>ref|XP_006364627.1| PREDICTED: THO complex subunit 4-like isoform X1 [Solanum
tuberosum] gi|565398120|ref|XP_006364628.1| PREDICTED:
THO complex subunit 4-like isoform X2 [Solanum
tuberosum]
Length = 282
Score = 58.2 bits (139), Expect = 2e-06
Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Frame = -1
Query: 245 LSTMGTSLDDNIKSRSNRARWDRRQDQ-RYGWGQRDTFGRG-----REAGTLRRGPLRVN 84
++++ +LDD IKSR N R R Q + R G G +F G R G RRGPL VN
Sbjct: 1 MASLDMTLDDMIKSRRNTERGGRGQGRARRGRGAGGSFRGGPFRGGRTTGAPRRGPLGVN 60
Query: 83 PWLAPYANAKPFRRPKDLMWRHDLYED 3
+ Y AK FRR K+L W++ L+ED
Sbjct: 61 ARPSAYTIAKTFRRTKNLPWQNGLFED 87
>ref|XP_010932904.1| PREDICTED: THO complex subunit 4D-like [Elaeis guineensis]
Length = 270
Score = 57.8 bits (138), Expect = 3e-06
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Frame = -1
Query: 227 SLDDNIKSRSNRARWDRRQDQRYGWG--QRDTFGRGREAGTLRRGPLRVNPWLAPYANAK 54
SL+D I+ + R Q + GWG + TF RGR +G L RGPL VN +PY AK
Sbjct: 2 SLNDLIRRSNGERGRGRGQGRGRGWGLGRGGTF-RGRSSGMLSRGPLGVNIRPSPYTVAK 60
Query: 53 PFRRPKDLMWRHDLYED 3
F + KD++ RHDL++D
Sbjct: 61 SFSKAKDMIRRHDLFDD 77
>ref|NP_001146734.1| uncharacterized protein LOC100280336 [Zea mays]
gi|194704900|gb|ACF86534.1| unknown [Zea mays]
gi|219888533|gb|ACL54641.1| unknown [Zea mays]
gi|413944317|gb|AFW76966.1| THO complex subunit 4 [Zea
mays]
Length = 306
Score = 57.8 bits (138), Expect = 3e-06
Identities = 36/87 (41%), Positives = 44/87 (50%), Gaps = 13/87 (14%)
Frame = -1
Query: 224 LDDNIKSRSNRA------------RWDRRQDQRYGWGQRDTFG-RGREAGTLRRGPLRVN 84
LDD IKSR+ R R D ++ R W R T R R G R PL VN
Sbjct: 9 LDDLIKSRAGRGTGRGRGQGGGRGRGDGQRLARGSWRGRGTGNFRERGLGVSSRRPLGVN 68
Query: 83 PWLAPYANAKPFRRPKDLMWRHDLYED 3
W + +A AK F + KD +WRHDL+ED
Sbjct: 69 TWSSSFAIAKSFNKAKDFVWRHDLFED 95
>gb|ACG35054.1| THO complex subunit 4 [Zea mays]
Length = 306
Score = 57.4 bits (137), Expect = 4e-06
Identities = 36/87 (41%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Frame = -1
Query: 224 LDDNIKSR------------SNRARWDRRQDQRYGWGQRDTFG-RGREAGTLRRGPLRVN 84
LDD IKSR R R D ++ R W R T R R G R PL VN
Sbjct: 9 LDDLIKSRXGRGTGRGRGQGGGRGRGDGQRLARGSWRGRGTGNFRERGLGVSSRRPLGVN 68
Query: 83 PWLAPYANAKPFRRPKDLMWRHDLYED 3
W + +A AK F + KD +WRHDL+ED
Sbjct: 69 TWSSSFAIAKSFNKAKDFVWRHDLFED 95
>gb|KGN57785.1| hypothetical protein Csa_3G302100 [Cucumis sativus]
Length = 278
Score = 57.0 bits (136), Expect = 5e-06
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = -1
Query: 227 SLDDNIKSRSNRARWDRRQDQRYGWGQRDTF--GRGREAGTLRRGPLRVNPWLAPYANAK 54
SL+D IK ++NR + R R G G +F GRG G++RRGPL +N + Y+ K
Sbjct: 8 SLEDVIK-KNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARASAYSIRK 66
Query: 53 PFRRPKDLMWRHDLYED 3
P R K++ W+HDL+ED
Sbjct: 67 PPHRMKNVQWQHDLFED 83