BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00005755
         (1786 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010271998.1| PREDICTED: DNA repair protein UVH3 isoform X...   594   e-167
ref|XP_010271997.1| PREDICTED: DNA repair protein UVH3 isoform X...   594   e-167
ref|XP_010271996.1| PREDICTED: DNA repair protein UVH3 isoform X...   594   e-167
ref|XP_010942436.1| PREDICTED: DNA repair protein UVH3 [Elaeis g...   580   e-162
ref|XP_012444069.1| PREDICTED: DNA repair protein UVH3 isoform X...   577   e-161
ref|XP_012444060.1| PREDICTED: DNA repair protein UVH3 isoform X...   577   e-161
ref|XP_012444053.1| PREDICTED: DNA repair protein UVH3 isoform X...   577   e-161
ref|XP_012444044.1| PREDICTED: DNA repair protein UVH3 isoform X...   577   e-161
ref|XP_012444035.1| PREDICTED: DNA repair protein UVH3 isoform X...   577   e-161
ref|XP_012444025.1| PREDICTED: DNA repair protein UVH3 isoform X...   577   e-161
gb|KJB11471.1| hypothetical protein B456_001G260400 [Gossypium r...   577   e-161
gb|KJB11470.1| hypothetical protein B456_001G260400 [Gossypium r...   577   e-161
gb|KJB11469.1| hypothetical protein B456_001G260400 [Gossypium r...   577   e-161
gb|KJB11468.1| hypothetical protein B456_001G260400 [Gossypium r...   577   e-161
gb|KJB11467.1| hypothetical protein B456_001G260400 [Gossypium r...   577   e-161
gb|KJB11466.1| hypothetical protein B456_001G260400 [Gossypium r...   577   e-161
gb|KJB11465.1| hypothetical protein B456_001G260400 [Gossypium r...   577   e-161
gb|KHG04183.1| DNA repair UVH3 -like protein [Gossypium arboreum]     575   e-161
ref|XP_007031408.1| DNA-repair protein UVH3, putative isoform 2,...   575   e-161
ref|XP_007031407.1| DNA-repair protein UVH3, putative isoform 1 ...   575   e-161

>ref|XP_010271998.1| PREDICTED: DNA repair protein UVH3 isoform X3 [Nelumbo nucifera]
          Length = 1430

 Score =  594 bits (1532), Expect = e-167
 Identities = 348/605 (57%), Positives = 407/605 (67%), Gaps = 19/605 (3%)
 Frame = +2

Query: 8    FSLEVPALEKDMSVSSNMPLNDVLHSEALCMTVDG-VKQLETLVQKDTLQINDSPEKH-S 181
            F  +V  L KD   S  +PL              G  ++L  +V KD    ND+P    S
Sbjct: 484  FPAQVLDLVKDTVDSLKLPLESNNQQIQSSYGAAGEFEKLNNVVSKDVPPSNDTPMGQLS 543

Query: 182  GSFTETRVDTKDGYQD-------LTLGHHEVIEDGYVCLETSHVEGTTNLKLMEVKTTGQ 340
             S      + K+   D       L     E  E     LE S++   + ++  E+     
Sbjct: 544  SSMALGETNEKETLTDELYLVPGLQSLSQEESEKRRFSLEKSNIGPVSPIEPKEIHLASD 603

Query: 341  EKCLDKSNQQEKEATFGEYTHGSAKISSHASDAVASDLT----DVLVDAHTNNSEAAPSR 508
            +K  D  +     A+  E   GS++  SH S   A++L     D LV A  +  E  P  
Sbjct: 604  KK-FDAFDDGGALASVTEAMDGSSRDDSHVS---ATELXVMPDDSLVGAAQH--ECGPVP 657

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVS-KQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQ 685
             SS   NEN   +E   +++  N+V  K   V D+      D    YRD+     N+E  
Sbjct: 658  CSSHEVNENIIPREEISVEKMENDVEIKNNPVTDEKYDAFSDGRTPYRDKSVIEDNMEVH 717

Query: 686  LERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPM 865
            +E S A LD+EM  L QERM LG+EQRKLERNAESVS EMFAECQELLQMFGLPYIIAPM
Sbjct: 718  IEASRAILDDEMQTLSQERMHLGEEQRKLERNAESVSGEMFAECQELLQMFGLPYIIAPM 777

Query: 866  EAEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTR 1045
            EAEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIE+ELGLTR
Sbjct: 778  EAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIESELGLTR 837

Query: 1046 EKLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAH 1225
            EKL  MALLLGSDYTEG+SGIGIVNAIEVV+AFPEEDGLQKF+EWLESPDPSIL K +AH
Sbjct: 838  EKLIHMALLLGSDYTEGISGIGIVNAIEVVHAFPEEDGLQKFKEWLESPDPSILEKFDAH 897

Query: 1226 AGHNAGKRKLKACSNGADGLTSNVDGESA--ESVVRGHDEQQSVDDLPDIKQIFMDKHRN 1399
            +  ++ K+ LK   N  + L   V    A   SV +G +++QS+D++ +IKQIFM+KHRN
Sbjct: 898  SESSSRKKLLKVNKNDVNYLEGRVQEGPAFDGSVPQGQNDRQSMDNIQNIKQIFMNKHRN 957

Query: 1400 VSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQKADEL 1579
            VSKNWHIPSSFPSEMV+SAY  PQVD STEPFSWGKPDLF LRKLCWE+FGWSNQKADEL
Sbjct: 958  VSKNWHIPSSFPSEMVVSAYASPQVDKSTEPFSWGKPDLFALRKLCWEKFGWSNQKADEL 1017

Query: 1580 LLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMD---HPSQV 1750
            LLPVLKEY+KHETQLRLEAFYTFNERFAKIRSQRIK+AVKGITGN+ SEL D     S+V
Sbjct: 1018 LLPVLKEYNKHETQLRLEAFYTFNERFAKIRSQRIKRAVKGITGNRTSELDDLLCEASKV 1077

Query: 1751 GSESR 1765
             + SR
Sbjct: 1078 KNRSR 1082


>ref|XP_010271997.1| PREDICTED: DNA repair protein UVH3 isoform X2 [Nelumbo nucifera]
          Length = 1264

 Score =  594 bits (1532), Expect = e-167
 Identities = 348/605 (57%), Positives = 407/605 (67%), Gaps = 19/605 (3%)
 Frame = +2

Query: 8    FSLEVPALEKDMSVSSNMPLNDVLHSEALCMTVDG-VKQLETLVQKDTLQINDSPEKH-S 181
            F  +V  L KD   S  +PL              G  ++L  +V KD    ND+P    S
Sbjct: 318  FPAQVLDLVKDTVDSLKLPLESNNQQIQSSYGAAGEFEKLNNVVSKDVPPSNDTPMGQLS 377

Query: 182  GSFTETRVDTKDGYQD-------LTLGHHEVIEDGYVCLETSHVEGTTNLKLMEVKTTGQ 340
             S      + K+   D       L     E  E     LE S++   + ++  E+     
Sbjct: 378  SSMALGETNEKETLTDELYLVPGLQSLSQEESEKRRFSLEKSNIGPVSPIEPKEIHLASD 437

Query: 341  EKCLDKSNQQEKEATFGEYTHGSAKISSHASDAVASDLT----DVLVDAHTNNSEAAPSR 508
            +K  D  +     A+  E   GS++  SH S   A++L     D LV A  +  E  P  
Sbjct: 438  KK-FDAFDDGGALASVTEAMDGSSRDDSHVS---ATELXVMPDDSLVGAAQH--ECGPVP 491

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVS-KQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQ 685
             SS   NEN   +E   +++  N+V  K   V D+      D    YRD+     N+E  
Sbjct: 492  CSSHEVNENIIPREEISVEKMENDVEIKNNPVTDEKYDAFSDGRTPYRDKSVIEDNMEVH 551

Query: 686  LERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPM 865
            +E S A LD+EM  L QERM LG+EQRKLERNAESVS EMFAECQELLQMFGLPYIIAPM
Sbjct: 552  IEASRAILDDEMQTLSQERMHLGEEQRKLERNAESVSGEMFAECQELLQMFGLPYIIAPM 611

Query: 866  EAEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTR 1045
            EAEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIE+ELGLTR
Sbjct: 612  EAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIESELGLTR 671

Query: 1046 EKLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAH 1225
            EKL  MALLLGSDYTEG+SGIGIVNAIEVV+AFPEEDGLQKF+EWLESPDPSIL K +AH
Sbjct: 672  EKLIHMALLLGSDYTEGISGIGIVNAIEVVHAFPEEDGLQKFKEWLESPDPSILEKFDAH 731

Query: 1226 AGHNAGKRKLKACSNGADGLTSNVDGESA--ESVVRGHDEQQSVDDLPDIKQIFMDKHRN 1399
            +  ++ K+ LK   N  + L   V    A   SV +G +++QS+D++ +IKQIFM+KHRN
Sbjct: 732  SESSSRKKLLKVNKNDVNYLEGRVQEGPAFDGSVPQGQNDRQSMDNIQNIKQIFMNKHRN 791

Query: 1400 VSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQKADEL 1579
            VSKNWHIPSSFPSEMV+SAY  PQVD STEPFSWGKPDLF LRKLCWE+FGWSNQKADEL
Sbjct: 792  VSKNWHIPSSFPSEMVVSAYASPQVDKSTEPFSWGKPDLFALRKLCWEKFGWSNQKADEL 851

Query: 1580 LLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMD---HPSQV 1750
            LLPVLKEY+KHETQLRLEAFYTFNERFAKIRSQRIK+AVKGITGN+ SEL D     S+V
Sbjct: 852  LLPVLKEYNKHETQLRLEAFYTFNERFAKIRSQRIKRAVKGITGNRTSELDDLLCEASKV 911

Query: 1751 GSESR 1765
             + SR
Sbjct: 912  KNRSR 916


>ref|XP_010271996.1| PREDICTED: DNA repair protein UVH3 isoform X1 [Nelumbo nucifera]
          Length = 1571

 Score =  594 bits (1532), Expect = e-167
 Identities = 348/605 (57%), Positives = 407/605 (67%), Gaps = 19/605 (3%)
 Frame = +2

Query: 8    FSLEVPALEKDMSVSSNMPLNDVLHSEALCMTVDG-VKQLETLVQKDTLQINDSPEKH-S 181
            F  +V  L KD   S  +PL              G  ++L  +V KD    ND+P    S
Sbjct: 625  FPAQVLDLVKDTVDSLKLPLESNNQQIQSSYGAAGEFEKLNNVVSKDVPPSNDTPMGQLS 684

Query: 182  GSFTETRVDTKDGYQD-------LTLGHHEVIEDGYVCLETSHVEGTTNLKLMEVKTTGQ 340
             S      + K+   D       L     E  E     LE S++   + ++  E+     
Sbjct: 685  SSMALGETNEKETLTDELYLVPGLQSLSQEESEKRRFSLEKSNIGPVSPIEPKEIHLASD 744

Query: 341  EKCLDKSNQQEKEATFGEYTHGSAKISSHASDAVASDLT----DVLVDAHTNNSEAAPSR 508
            +K  D  +     A+  E   GS++  SH S   A++L     D LV A  +  E  P  
Sbjct: 745  KK-FDAFDDGGALASVTEAMDGSSRDDSHVS---ATELXVMPDDSLVGAAQH--ECGPVP 798

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVS-KQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQ 685
             SS   NEN   +E   +++  N+V  K   V D+      D    YRD+     N+E  
Sbjct: 799  CSSHEVNENIIPREEISVEKMENDVEIKNNPVTDEKYDAFSDGRTPYRDKSVIEDNMEVH 858

Query: 686  LERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPM 865
            +E S A LD+EM  L QERM LG+EQRKLERNAESVS EMFAECQELLQMFGLPYIIAPM
Sbjct: 859  IEASRAILDDEMQTLSQERMHLGEEQRKLERNAESVSGEMFAECQELLQMFGLPYIIAPM 918

Query: 866  EAEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTR 1045
            EAEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIE+ELGLTR
Sbjct: 919  EAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIESELGLTR 978

Query: 1046 EKLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAH 1225
            EKL  MALLLGSDYTEG+SGIGIVNAIEVV+AFPEEDGLQKF+EWLESPDPSIL K +AH
Sbjct: 979  EKLIHMALLLGSDYTEGISGIGIVNAIEVVHAFPEEDGLQKFKEWLESPDPSILEKFDAH 1038

Query: 1226 AGHNAGKRKLKACSNGADGLTSNVDGESA--ESVVRGHDEQQSVDDLPDIKQIFMDKHRN 1399
            +  ++ K+ LK   N  + L   V    A   SV +G +++QS+D++ +IKQIFM+KHRN
Sbjct: 1039 SESSSRKKLLKVNKNDVNYLEGRVQEGPAFDGSVPQGQNDRQSMDNIQNIKQIFMNKHRN 1098

Query: 1400 VSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQKADEL 1579
            VSKNWHIPSSFPSEMV+SAY  PQVD STEPFSWGKPDLF LRKLCWE+FGWSNQKADEL
Sbjct: 1099 VSKNWHIPSSFPSEMVVSAYASPQVDKSTEPFSWGKPDLFALRKLCWEKFGWSNQKADEL 1158

Query: 1580 LLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMD---HPSQV 1750
            LLPVLKEY+KHETQLRLEAFYTFNERFAKIRSQRIK+AVKGITGN+ SEL D     S+V
Sbjct: 1159 LLPVLKEYNKHETQLRLEAFYTFNERFAKIRSQRIKRAVKGITGNRTSELDDLLCEASKV 1218

Query: 1751 GSESR 1765
             + SR
Sbjct: 1219 KNRSR 1223


>ref|XP_010942436.1| PREDICTED: DNA repair protein UVH3 [Elaeis guineensis]
          Length = 1567

 Score =  580 bits (1495), Expect = e-162
 Identities = 328/586 (55%), Positives = 402/586 (68%), Gaps = 8/586 (1%)
 Frame = +2

Query: 53   SNMPLNDVL-HSEALCMTVDGVKQLETLVQKDTLQINDSPEKHSGSFTETRVDTKDGYQD 229
            +N+PL   +  S  LC TV    Q +       L++ DS +KH    T + V+     + 
Sbjct: 663  TNVPLESHIGRSLPLCATVAEHGQHDNA---GVLRMTDSGKKHLSPSTSSGVEVDR--KS 717

Query: 230  LTLGHHEVIEDGY-VCLETSHVEGTTNLKLMEVKTTGQEKCLDKSNQQEKEATF---GEY 397
              +   +  E G  +C   +      +  L ++K    + CLD S   + E +     E+
Sbjct: 718  SVMNDSKDDESGRTLCQINAPSAEPVDDHLSQIK----QCCLDTSEVAKNECSLISTNEF 773

Query: 398  THGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSRLSSEITNENFNFQEGAYIDQTTN 577
               S  IS + S    +    VL  AH ++  A+ S LS    N +   Q+ + +++  +
Sbjct: 774  AETSYDISVNTSSVPDA----VLSAAHHDDCAASQSSLSFGNGNNDVYSQKSSLVEEAVD 829

Query: 578  NVSKQ--ELVKDQTCGMPPDKGWQYRDEIASHGNVEQQLERSEASLDEEMLLLRQERMDL 751
            N  ++  +++   +    PD     R +       +  +E  EA+LD+E+ LLRQE  DL
Sbjct: 830  NDGEEPEQVIAQNSI---PDS---VRGKTTIQEYPDDHMELFEANLDDEISLLRQECFDL 883

Query: 752  GDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELVNLVDGVVTDD 931
            G+EQRKLERNAE+VSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYME+ NLVDGVVTDD
Sbjct: 884  GNEQRKLERNAETVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDD 943

Query: 932  SDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTREKLTRMALLLGSDYTEGVSGIG 1111
            SDVFLFGARSVYKNIFDDRKYVETYFMKDIE+ELGL REK+ RMALLLGSDYTEGVSGIG
Sbjct: 944  SDVFLFGARSVYKNIFDDRKYVETYFMKDIESELGLNREKIIRMALLLGSDYTEGVSGIG 1003

Query: 1112 IVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHAGHNAGKRKLKACSNGADGLTS 1291
            IVNAIEVV+AFPEEDGL+KF+EW+ESPDP+IL KL++H G ++  R  KA  + ADG+  
Sbjct: 1004 IVNAIEVVHAFPEEDGLKKFKEWIESPDPAILEKLDSHTGGSSRNRSSKASKDNADGMRK 1063

Query: 1292 NVDGESAESVVRG-HDEQQSVDDLPDIKQIFMDKHRNVSKNWHIPSSFPSEMVISAYTFP 1468
            NV   + E  V G H +Q SV    DIK +FM KHRNVSKNWHIP SFPSE VI+AY  P
Sbjct: 1064 NVGLSTIEETVLGSHVDQPSVSGTQDIKDVFMSKHRNVSKNWHIPPSFPSESVITAYISP 1123

Query: 1469 QVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQKADELLLPVLKEYSKHETQLRLEAFYTF 1648
            QVD STEPFSWGKPDL +LR+LCWERFGW NQKADELL+PVLKEY+KHETQLRLEAFYTF
Sbjct: 1124 QVDESTEPFSWGKPDLVLLRRLCWERFGWGNQKADELLIPVLKEYNKHETQLRLEAFYTF 1183

Query: 1649 NERFAKIRSQRIKKAVKGITGNQASELMDHPSQVGSESRKKRKVRP 1786
            NERFAKIRSQRIKKA+KGITG  +S+L D   Q GS SRKKR++ P
Sbjct: 1184 NERFAKIRSQRIKKALKGITGTCSSDLTDDRVQEGSSSRKKRRLSP 1229


>ref|XP_012444069.1| PREDICTED: DNA repair protein UVH3 isoform X6 [Gossypium raimondii]
          Length = 1401

 Score =  577 bits (1486), Expect = e-161
 Identities = 333/614 (54%), Positives = 403/614 (65%), Gaps = 29/614 (4%)
 Frame = +2

Query: 32   EKDMSVSSNMPLNDVLHSEALCMTVDGVKQLETLVQKDTLQINDSPEKHSGSFTETRVDT 211
            EK  + +S+ P + V      C  +D  ++  T+ +    +  +SPE  S      +  T
Sbjct: 419  EKGDTGASSFPGDAVNWQNKSCENLDRPRKPCTVNEPSISETFNSPESPSPVHNSDKNMT 478

Query: 212  --------KDGYQDLTLGHHEVIEDGYVCLETSHVEGTTNLKL-MEVKTTGQEKCLD--- 355
                     DG       H+E  E  +V      V+  T   L +  +  G     D   
Sbjct: 479  ILSKFSERSDGSHSEQSRHNETAE--FVATLEKEVDFPTGKHLDVSKEVDGLSTISDSWF 536

Query: 356  KSNQQEKEATFGEY---------THGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSR 508
            K N    +A  G+          T    + S+  SD  +S   ++L      + EA PS+
Sbjct: 537  KDNSHSFDAAHGDIPDTIQVDKKTGSEDEPSNLVSDNKSSIEAEILDQDKKIDFEAKPSQ 596

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVSKQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQL 688
             S +  N +    + +     ++   +QEL  D T     +K  Q+ D     GN  +++
Sbjct: 597  QSVDTVNLSIPTVQSSANKVISDLHIEQELSGDITYENCVNKAEQHTDMSTIKGNDNEEI 656

Query: 689  ERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 868
            + S+ASLDEE+L+L QE +++ DEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME
Sbjct: 657  KFSKASLDEELLILDQECINMVDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 716

Query: 869  AEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTRE 1048
            AEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE ELGLTRE
Sbjct: 717  AEAQCAYMELTNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTRE 776

Query: 1049 KLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHA 1228
            KL RMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGL KFREW+ESPDP+ILGKLN   
Sbjct: 777  KLMRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQE 836

Query: 1229 GHNAGKRKLKACSNGADGLTSNVDGESAESVVRGHDE--------QQSVDDLPDIKQIFM 1384
            G +A KR  K+     +G  ++  G  + +     D+         QS D   DIKQIFM
Sbjct: 837  GSSARKRGPKSTEKDVNGTKTSTRGSESNNGTSSLDQNSFQADKNMQSTDCTDDIKQIFM 896

Query: 1385 DKHRNVSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQ 1564
            DKHRNVSKNWHIPSSFPSE VISAY+ PQVD STEPF+WG+PDLFVLRKLCWE+FGW +Q
Sbjct: 897  DKHRNVSKNWHIPSSFPSEAVISAYSLPQVDKSTEPFTWGRPDLFVLRKLCWEKFGWGSQ 956

Query: 1565 KADELLLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPS 1744
            K+DELLLPVL+E  K ETQLR+EAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   
Sbjct: 957  KSDELLLPVLRESEKRETQLRMEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDGM 1016

Query: 1745 QVGSESRKKRKVRP 1786
            Q  S+SR+KR+  P
Sbjct: 1017 QQVSKSRRKRRASP 1030


>ref|XP_012444060.1| PREDICTED: DNA repair protein UVH3 isoform X5 [Gossypium raimondii]
          Length = 1440

 Score =  577 bits (1486), Expect = e-161
 Identities = 333/614 (54%), Positives = 403/614 (65%), Gaps = 29/614 (4%)
 Frame = +2

Query: 32   EKDMSVSSNMPLNDVLHSEALCMTVDGVKQLETLVQKDTLQINDSPEKHSGSFTETRVDT 211
            EK  + +S+ P + V      C  +D  ++  T+ +    +  +SPE  S      +  T
Sbjct: 458  EKGDTGASSFPGDAVNWQNKSCENLDRPRKPCTVNEPSISETFNSPESPSPVHNSDKNMT 517

Query: 212  --------KDGYQDLTLGHHEVIEDGYVCLETSHVEGTTNLKL-MEVKTTGQEKCLD--- 355
                     DG       H+E  E  +V      V+  T   L +  +  G     D   
Sbjct: 518  ILSKFSERSDGSHSEQSRHNETAE--FVATLEKEVDFPTGKHLDVSKEVDGLSTISDSWF 575

Query: 356  KSNQQEKEATFGEY---------THGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSR 508
            K N    +A  G+          T    + S+  SD  +S   ++L      + EA PS+
Sbjct: 576  KDNSHSFDAAHGDIPDTIQVDKKTGSEDEPSNLVSDNKSSIEAEILDQDKKIDFEAKPSQ 635

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVSKQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQL 688
             S +  N +    + +     ++   +QEL  D T     +K  Q+ D     GN  +++
Sbjct: 636  QSVDTVNLSIPTVQSSANKVISDLHIEQELSGDITYENCVNKAEQHTDMSTIKGNDNEEI 695

Query: 689  ERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 868
            + S+ASLDEE+L+L QE +++ DEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME
Sbjct: 696  KFSKASLDEELLILDQECINMVDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 755

Query: 869  AEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTRE 1048
            AEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE ELGLTRE
Sbjct: 756  AEAQCAYMELTNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTRE 815

Query: 1049 KLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHA 1228
            KL RMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGL KFREW+ESPDP+ILGKLN   
Sbjct: 816  KLMRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQE 875

Query: 1229 GHNAGKRKLKACSNGADGLTSNVDGESAESVVRGHDE--------QQSVDDLPDIKQIFM 1384
            G +A KR  K+     +G  ++  G  + +     D+         QS D   DIKQIFM
Sbjct: 876  GSSARKRGPKSTEKDVNGTKTSTRGSESNNGTSSLDQNSFQADKNMQSTDCTDDIKQIFM 935

Query: 1385 DKHRNVSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQ 1564
            DKHRNVSKNWHIPSSFPSE VISAY+ PQVD STEPF+WG+PDLFVLRKLCWE+FGW +Q
Sbjct: 936  DKHRNVSKNWHIPSSFPSEAVISAYSLPQVDKSTEPFTWGRPDLFVLRKLCWEKFGWGSQ 995

Query: 1565 KADELLLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPS 1744
            K+DELLLPVL+E  K ETQLR+EAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   
Sbjct: 996  KSDELLLPVLRESEKRETQLRMEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDGM 1055

Query: 1745 QVGSESRKKRKVRP 1786
            Q  S+SR+KR+  P
Sbjct: 1056 QQVSKSRRKRRASP 1069


>ref|XP_012444053.1| PREDICTED: DNA repair protein UVH3 isoform X4 [Gossypium raimondii]
          Length = 1591

 Score =  577 bits (1486), Expect = e-161
 Identities = 333/614 (54%), Positives = 403/614 (65%), Gaps = 29/614 (4%)
 Frame = +2

Query: 32   EKDMSVSSNMPLNDVLHSEALCMTVDGVKQLETLVQKDTLQINDSPEKHSGSFTETRVDT 211
            EK  + +S+ P + V      C  +D  ++  T+ +    +  +SPE  S      +  T
Sbjct: 609  EKGDTGASSFPGDAVNWQNKSCENLDRPRKPCTVNEPSISETFNSPESPSPVHNSDKNMT 668

Query: 212  --------KDGYQDLTLGHHEVIEDGYVCLETSHVEGTTNLKL-MEVKTTGQEKCLD--- 355
                     DG       H+E  E  +V      V+  T   L +  +  G     D   
Sbjct: 669  ILSKFSERSDGSHSEQSRHNETAE--FVATLEKEVDFPTGKHLDVSKEVDGLSTISDSWF 726

Query: 356  KSNQQEKEATFGEY---------THGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSR 508
            K N    +A  G+          T    + S+  SD  +S   ++L      + EA PS+
Sbjct: 727  KDNSHSFDAAHGDIPDTIQVDKKTGSEDEPSNLVSDNKSSIEAEILDQDKKIDFEAKPSQ 786

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVSKQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQL 688
             S +  N +    + +     ++   +QEL  D T     +K  Q+ D     GN  +++
Sbjct: 787  QSVDTVNLSIPTVQSSANKVISDLHIEQELSGDITYENCVNKAEQHTDMSTIKGNDNEEI 846

Query: 689  ERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 868
            + S+ASLDEE+L+L QE +++ DEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME
Sbjct: 847  KFSKASLDEELLILDQECINMVDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 906

Query: 869  AEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTRE 1048
            AEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE ELGLTRE
Sbjct: 907  AEAQCAYMELTNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTRE 966

Query: 1049 KLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHA 1228
            KL RMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGL KFREW+ESPDP+ILGKLN   
Sbjct: 967  KLMRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQE 1026

Query: 1229 GHNAGKRKLKACSNGADGLTSNVDGESAESVVRGHDE--------QQSVDDLPDIKQIFM 1384
            G +A KR  K+     +G  ++  G  + +     D+         QS D   DIKQIFM
Sbjct: 1027 GSSARKRGPKSTEKDVNGTKTSTRGSESNNGTSSLDQNSFQADKNMQSTDCTDDIKQIFM 1086

Query: 1385 DKHRNVSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQ 1564
            DKHRNVSKNWHIPSSFPSE VISAY+ PQVD STEPF+WG+PDLFVLRKLCWE+FGW +Q
Sbjct: 1087 DKHRNVSKNWHIPSSFPSEAVISAYSLPQVDKSTEPFTWGRPDLFVLRKLCWEKFGWGSQ 1146

Query: 1565 KADELLLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPS 1744
            K+DELLLPVL+E  K ETQLR+EAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   
Sbjct: 1147 KSDELLLPVLRESEKRETQLRMEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDGM 1206

Query: 1745 QVGSESRKKRKVRP 1786
            Q  S+SR+KR+  P
Sbjct: 1207 QQVSKSRRKRRASP 1220


>ref|XP_012444044.1| PREDICTED: DNA repair protein UVH3 isoform X3 [Gossypium raimondii]
          Length = 1706

 Score =  577 bits (1486), Expect = e-161
 Identities = 333/614 (54%), Positives = 403/614 (65%), Gaps = 29/614 (4%)
 Frame = +2

Query: 32   EKDMSVSSNMPLNDVLHSEALCMTVDGVKQLETLVQKDTLQINDSPEKHSGSFTETRVDT 211
            EK  + +S+ P + V      C  +D  ++  T+ +    +  +SPE  S      +  T
Sbjct: 724  EKGDTGASSFPGDAVNWQNKSCENLDRPRKPCTVNEPSISETFNSPESPSPVHNSDKNMT 783

Query: 212  --------KDGYQDLTLGHHEVIEDGYVCLETSHVEGTTNLKL-MEVKTTGQEKCLD--- 355
                     DG       H+E  E  +V      V+  T   L +  +  G     D   
Sbjct: 784  ILSKFSERSDGSHSEQSRHNETAE--FVATLEKEVDFPTGKHLDVSKEVDGLSTISDSWF 841

Query: 356  KSNQQEKEATFGEY---------THGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSR 508
            K N    +A  G+          T    + S+  SD  +S   ++L      + EA PS+
Sbjct: 842  KDNSHSFDAAHGDIPDTIQVDKKTGSEDEPSNLVSDNKSSIEAEILDQDKKIDFEAKPSQ 901

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVSKQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQL 688
             S +  N +    + +     ++   +QEL  D T     +K  Q+ D     GN  +++
Sbjct: 902  QSVDTVNLSIPTVQSSANKVISDLHIEQELSGDITYENCVNKAEQHTDMSTIKGNDNEEI 961

Query: 689  ERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 868
            + S+ASLDEE+L+L QE +++ DEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME
Sbjct: 962  KFSKASLDEELLILDQECINMVDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 1021

Query: 869  AEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTRE 1048
            AEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE ELGLTRE
Sbjct: 1022 AEAQCAYMELTNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTRE 1081

Query: 1049 KLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHA 1228
            KL RMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGL KFREW+ESPDP+ILGKLN   
Sbjct: 1082 KLMRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQE 1141

Query: 1229 GHNAGKRKLKACSNGADGLTSNVDGESAESVVRGHDE--------QQSVDDLPDIKQIFM 1384
            G +A KR  K+     +G  ++  G  + +     D+         QS D   DIKQIFM
Sbjct: 1142 GSSARKRGPKSTEKDVNGTKTSTRGSESNNGTSSLDQNSFQADKNMQSTDCTDDIKQIFM 1201

Query: 1385 DKHRNVSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQ 1564
            DKHRNVSKNWHIPSSFPSE VISAY+ PQVD STEPF+WG+PDLFVLRKLCWE+FGW +Q
Sbjct: 1202 DKHRNVSKNWHIPSSFPSEAVISAYSLPQVDKSTEPFTWGRPDLFVLRKLCWEKFGWGSQ 1261

Query: 1565 KADELLLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPS 1744
            K+DELLLPVL+E  K ETQLR+EAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   
Sbjct: 1262 KSDELLLPVLRESEKRETQLRMEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDGM 1321

Query: 1745 QVGSESRKKRKVRP 1786
            Q  S+SR+KR+  P
Sbjct: 1322 QQVSKSRRKRRASP 1335


>ref|XP_012444035.1| PREDICTED: DNA repair protein UVH3 isoform X2 [Gossypium raimondii]
          Length = 1707

 Score =  577 bits (1486), Expect = e-161
 Identities = 333/614 (54%), Positives = 403/614 (65%), Gaps = 29/614 (4%)
 Frame = +2

Query: 32   EKDMSVSSNMPLNDVLHSEALCMTVDGVKQLETLVQKDTLQINDSPEKHSGSFTETRVDT 211
            EK  + +S+ P + V      C  +D  ++  T+ +    +  +SPE  S      +  T
Sbjct: 725  EKGDTGASSFPGDAVNWQNKSCENLDRPRKPCTVNEPSISETFNSPESPSPVHNSDKNMT 784

Query: 212  --------KDGYQDLTLGHHEVIEDGYVCLETSHVEGTTNLKL-MEVKTTGQEKCLD--- 355
                     DG       H+E  E  +V      V+  T   L +  +  G     D   
Sbjct: 785  ILSKFSERSDGSHSEQSRHNETAE--FVATLEKEVDFPTGKHLDVSKEVDGLSTISDSWF 842

Query: 356  KSNQQEKEATFGEY---------THGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSR 508
            K N    +A  G+          T    + S+  SD  +S   ++L      + EA PS+
Sbjct: 843  KDNSHSFDAAHGDIPDTIQVDKKTGSEDEPSNLVSDNKSSIEAEILDQDKKIDFEAKPSQ 902

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVSKQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQL 688
             S +  N +    + +     ++   +QEL  D T     +K  Q+ D     GN  +++
Sbjct: 903  QSVDTVNLSIPTVQSSANKVISDLHIEQELSGDITYENCVNKAEQHTDMSTIKGNDNEEI 962

Query: 689  ERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 868
            + S+ASLDEE+L+L QE +++ DEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME
Sbjct: 963  KFSKASLDEELLILDQECINMVDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 1022

Query: 869  AEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTRE 1048
            AEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE ELGLTRE
Sbjct: 1023 AEAQCAYMELTNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTRE 1082

Query: 1049 KLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHA 1228
            KL RMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGL KFREW+ESPDP+ILGKLN   
Sbjct: 1083 KLMRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQE 1142

Query: 1229 GHNAGKRKLKACSNGADGLTSNVDGESAESVVRGHDE--------QQSVDDLPDIKQIFM 1384
            G +A KR  K+     +G  ++  G  + +     D+         QS D   DIKQIFM
Sbjct: 1143 GSSARKRGPKSTEKDVNGTKTSTRGSESNNGTSSLDQNSFQADKNMQSTDCTDDIKQIFM 1202

Query: 1385 DKHRNVSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQ 1564
            DKHRNVSKNWHIPSSFPSE VISAY+ PQVD STEPF+WG+PDLFVLRKLCWE+FGW +Q
Sbjct: 1203 DKHRNVSKNWHIPSSFPSEAVISAYSLPQVDKSTEPFTWGRPDLFVLRKLCWEKFGWGSQ 1262

Query: 1565 KADELLLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPS 1744
            K+DELLLPVL+E  K ETQLR+EAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   
Sbjct: 1263 KSDELLLPVLRESEKRETQLRMEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDGM 1322

Query: 1745 QVGSESRKKRKVRP 1786
            Q  S+SR+KR+  P
Sbjct: 1323 QQVSKSRRKRRASP 1336


>ref|XP_012444025.1| PREDICTED: DNA repair protein UVH3 isoform X1 [Gossypium raimondii]
          Length = 1710

 Score =  577 bits (1486), Expect = e-161
 Identities = 333/614 (54%), Positives = 403/614 (65%), Gaps = 29/614 (4%)
 Frame = +2

Query: 32   EKDMSVSSNMPLNDVLHSEALCMTVDGVKQLETLVQKDTLQINDSPEKHSGSFTETRVDT 211
            EK  + +S+ P + V      C  +D  ++  T+ +    +  +SPE  S      +  T
Sbjct: 728  EKGDTGASSFPGDAVNWQNKSCENLDRPRKPCTVNEPSISETFNSPESPSPVHNSDKNMT 787

Query: 212  --------KDGYQDLTLGHHEVIEDGYVCLETSHVEGTTNLKL-MEVKTTGQEKCLD--- 355
                     DG       H+E  E  +V      V+  T   L +  +  G     D   
Sbjct: 788  ILSKFSERSDGSHSEQSRHNETAE--FVATLEKEVDFPTGKHLDVSKEVDGLSTISDSWF 845

Query: 356  KSNQQEKEATFGEY---------THGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSR 508
            K N    +A  G+          T    + S+  SD  +S   ++L      + EA PS+
Sbjct: 846  KDNSHSFDAAHGDIPDTIQVDKKTGSEDEPSNLVSDNKSSIEAEILDQDKKIDFEAKPSQ 905

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVSKQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQL 688
             S +  N +    + +     ++   +QEL  D T     +K  Q+ D     GN  +++
Sbjct: 906  QSVDTVNLSIPTVQSSANKVISDLHIEQELSGDITYENCVNKAEQHTDMSTIKGNDNEEI 965

Query: 689  ERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 868
            + S+ASLDEE+L+L QE +++ DEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME
Sbjct: 966  KFSKASLDEELLILDQECINMVDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 1025

Query: 869  AEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTRE 1048
            AEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE ELGLTRE
Sbjct: 1026 AEAQCAYMELTNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTRE 1085

Query: 1049 KLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHA 1228
            KL RMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGL KFREW+ESPDP+ILGKLN   
Sbjct: 1086 KLMRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQE 1145

Query: 1229 GHNAGKRKLKACSNGADGLTSNVDGESAESVVRGHDE--------QQSVDDLPDIKQIFM 1384
            G +A KR  K+     +G  ++  G  + +     D+         QS D   DIKQIFM
Sbjct: 1146 GSSARKRGPKSTEKDVNGTKTSTRGSESNNGTSSLDQNSFQADKNMQSTDCTDDIKQIFM 1205

Query: 1385 DKHRNVSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQ 1564
            DKHRNVSKNWHIPSSFPSE VISAY+ PQVD STEPF+WG+PDLFVLRKLCWE+FGW +Q
Sbjct: 1206 DKHRNVSKNWHIPSSFPSEAVISAYSLPQVDKSTEPFTWGRPDLFVLRKLCWEKFGWGSQ 1265

Query: 1565 KADELLLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPS 1744
            K+DELLLPVL+E  K ETQLR+EAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   
Sbjct: 1266 KSDELLLPVLRESEKRETQLRMEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDGM 1325

Query: 1745 QVGSESRKKRKVRP 1786
            Q  S+SR+KR+  P
Sbjct: 1326 QQVSKSRRKRRASP 1339


>gb|KJB11471.1| hypothetical protein B456_001G260400 [Gossypium raimondii]
          Length = 1635

 Score =  577 bits (1486), Expect = e-161
 Identities = 333/614 (54%), Positives = 403/614 (65%), Gaps = 29/614 (4%)
 Frame = +2

Query: 32   EKDMSVSSNMPLNDVLHSEALCMTVDGVKQLETLVQKDTLQINDSPEKHSGSFTETRVDT 211
            EK  + +S+ P + V      C  +D  ++  T+ +    +  +SPE  S      +  T
Sbjct: 687  EKGDTGASSFPGDAVNWQNKSCENLDRPRKPCTVNEPSISETFNSPESPSPVHNSDKNMT 746

Query: 212  --------KDGYQDLTLGHHEVIEDGYVCLETSHVEGTTNLKL-MEVKTTGQEKCLD--- 355
                     DG       H+E  E  +V      V+  T   L +  +  G     D   
Sbjct: 747  ILSKFSERSDGSHSEQSRHNETAE--FVATLEKEVDFPTGKHLDVSKEVDGLSTISDSWF 804

Query: 356  KSNQQEKEATFGEY---------THGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSR 508
            K N    +A  G+          T    + S+  SD  +S   ++L      + EA PS+
Sbjct: 805  KDNSHSFDAAHGDIPDTIQVDKKTGSEDEPSNLVSDNKSSIEAEILDQDKKIDFEAKPSQ 864

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVSKQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQL 688
             S +  N +    + +     ++   +QEL  D T     +K  Q+ D     GN  +++
Sbjct: 865  QSVDTVNLSIPTVQSSANKVISDLHIEQELSGDITYENCVNKAEQHTDMSTIKGNDNEEI 924

Query: 689  ERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 868
            + S+ASLDEE+L+L QE +++ DEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME
Sbjct: 925  KFSKASLDEELLILDQECINMVDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 984

Query: 869  AEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTRE 1048
            AEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE ELGLTRE
Sbjct: 985  AEAQCAYMELTNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTRE 1044

Query: 1049 KLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHA 1228
            KL RMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGL KFREW+ESPDP+ILGKLN   
Sbjct: 1045 KLMRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQE 1104

Query: 1229 GHNAGKRKLKACSNGADGLTSNVDGESAESVVRGHDE--------QQSVDDLPDIKQIFM 1384
            G +A KR  K+     +G  ++  G  + +     D+         QS D   DIKQIFM
Sbjct: 1105 GSSARKRGPKSTEKDVNGTKTSTRGSESNNGTSSLDQNSFQADKNMQSTDCTDDIKQIFM 1164

Query: 1385 DKHRNVSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQ 1564
            DKHRNVSKNWHIPSSFPSE VISAY+ PQVD STEPF+WG+PDLFVLRKLCWE+FGW +Q
Sbjct: 1165 DKHRNVSKNWHIPSSFPSEAVISAYSLPQVDKSTEPFTWGRPDLFVLRKLCWEKFGWGSQ 1224

Query: 1565 KADELLLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPS 1744
            K+DELLLPVL+E  K ETQLR+EAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   
Sbjct: 1225 KSDELLLPVLRESEKRETQLRMEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDGM 1284

Query: 1745 QVGSESRKKRKVRP 1786
            Q  S+SR+KR+  P
Sbjct: 1285 QQVSKSRRKRRASP 1298


>gb|KJB11470.1| hypothetical protein B456_001G260400 [Gossypium raimondii]
          Length = 1696

 Score =  577 bits (1486), Expect = e-161
 Identities = 333/614 (54%), Positives = 403/614 (65%), Gaps = 29/614 (4%)
 Frame = +2

Query: 32   EKDMSVSSNMPLNDVLHSEALCMTVDGVKQLETLVQKDTLQINDSPEKHSGSFTETRVDT 211
            EK  + +S+ P + V      C  +D  ++  T+ +    +  +SPE  S      +  T
Sbjct: 714  EKGDTGASSFPGDAVNWQNKSCENLDRPRKPCTVNEPSISETFNSPESPSPVHNSDKNMT 773

Query: 212  --------KDGYQDLTLGHHEVIEDGYVCLETSHVEGTTNLKL-MEVKTTGQEKCLD--- 355
                     DG       H+E  E  +V      V+  T   L +  +  G     D   
Sbjct: 774  ILSKFSERSDGSHSEQSRHNETAE--FVATLEKEVDFPTGKHLDVSKEVDGLSTISDSWF 831

Query: 356  KSNQQEKEATFGEY---------THGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSR 508
            K N    +A  G+          T    + S+  SD  +S   ++L      + EA PS+
Sbjct: 832  KDNSHSFDAAHGDIPDTIQVDKKTGSEDEPSNLVSDNKSSIEAEILDQDKKIDFEAKPSQ 891

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVSKQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQL 688
             S +  N +    + +     ++   +QEL  D T     +K  Q+ D     GN  +++
Sbjct: 892  QSVDTVNLSIPTVQSSANKVISDLHIEQELSGDITYENCVNKAEQHTDMSTIKGNDNEEI 951

Query: 689  ERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 868
            + S+ASLDEE+L+L QE +++ DEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME
Sbjct: 952  KFSKASLDEELLILDQECINMVDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 1011

Query: 869  AEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTRE 1048
            AEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE ELGLTRE
Sbjct: 1012 AEAQCAYMELTNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTRE 1071

Query: 1049 KLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHA 1228
            KL RMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGL KFREW+ESPDP+ILGKLN   
Sbjct: 1072 KLMRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQE 1131

Query: 1229 GHNAGKRKLKACSNGADGLTSNVDGESAESVVRGHDE--------QQSVDDLPDIKQIFM 1384
            G +A KR  K+     +G  ++  G  + +     D+         QS D   DIKQIFM
Sbjct: 1132 GSSARKRGPKSTEKDVNGTKTSTRGSESNNGTSSLDQNSFQADKNMQSTDCTDDIKQIFM 1191

Query: 1385 DKHRNVSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQ 1564
            DKHRNVSKNWHIPSSFPSE VISAY+ PQVD STEPF+WG+PDLFVLRKLCWE+FGW +Q
Sbjct: 1192 DKHRNVSKNWHIPSSFPSEAVISAYSLPQVDKSTEPFTWGRPDLFVLRKLCWEKFGWGSQ 1251

Query: 1565 KADELLLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPS 1744
            K+DELLLPVL+E  K ETQLR+EAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   
Sbjct: 1252 KSDELLLPVLRESEKRETQLRMEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDGM 1311

Query: 1745 QVGSESRKKRKVRP 1786
            Q  S+SR+KR+  P
Sbjct: 1312 QQVSKSRRKRRASP 1325


>gb|KJB11469.1| hypothetical protein B456_001G260400 [Gossypium raimondii]
          Length = 1700

 Score =  577 bits (1486), Expect = e-161
 Identities = 333/614 (54%), Positives = 403/614 (65%), Gaps = 29/614 (4%)
 Frame = +2

Query: 32   EKDMSVSSNMPLNDVLHSEALCMTVDGVKQLETLVQKDTLQINDSPEKHSGSFTETRVDT 211
            EK  + +S+ P + V      C  +D  ++  T+ +    +  +SPE  S      +  T
Sbjct: 718  EKGDTGASSFPGDAVNWQNKSCENLDRPRKPCTVNEPSISETFNSPESPSPVHNSDKNMT 777

Query: 212  --------KDGYQDLTLGHHEVIEDGYVCLETSHVEGTTNLKL-MEVKTTGQEKCLD--- 355
                     DG       H+E  E  +V      V+  T   L +  +  G     D   
Sbjct: 778  ILSKFSERSDGSHSEQSRHNETAE--FVATLEKEVDFPTGKHLDVSKEVDGLSTISDSWF 835

Query: 356  KSNQQEKEATFGEY---------THGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSR 508
            K N    +A  G+          T    + S+  SD  +S   ++L      + EA PS+
Sbjct: 836  KDNSHSFDAAHGDIPDTIQVDKKTGSEDEPSNLVSDNKSSIEAEILDQDKKIDFEAKPSQ 895

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVSKQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQL 688
             S +  N +    + +     ++   +QEL  D T     +K  Q+ D     GN  +++
Sbjct: 896  QSVDTVNLSIPTVQSSANKVISDLHIEQELSGDITYENCVNKAEQHTDMSTIKGNDNEEI 955

Query: 689  ERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 868
            + S+ASLDEE+L+L QE +++ DEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME
Sbjct: 956  KFSKASLDEELLILDQECINMVDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 1015

Query: 869  AEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTRE 1048
            AEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE ELGLTRE
Sbjct: 1016 AEAQCAYMELTNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTRE 1075

Query: 1049 KLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHA 1228
            KL RMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGL KFREW+ESPDP+ILGKLN   
Sbjct: 1076 KLMRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQE 1135

Query: 1229 GHNAGKRKLKACSNGADGLTSNVDGESAESVVRGHDE--------QQSVDDLPDIKQIFM 1384
            G +A KR  K+     +G  ++  G  + +     D+         QS D   DIKQIFM
Sbjct: 1136 GSSARKRGPKSTEKDVNGTKTSTRGSESNNGTSSLDQNSFQADKNMQSTDCTDDIKQIFM 1195

Query: 1385 DKHRNVSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQ 1564
            DKHRNVSKNWHIPSSFPSE VISAY+ PQVD STEPF+WG+PDLFVLRKLCWE+FGW +Q
Sbjct: 1196 DKHRNVSKNWHIPSSFPSEAVISAYSLPQVDKSTEPFTWGRPDLFVLRKLCWEKFGWGSQ 1255

Query: 1565 KADELLLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPS 1744
            K+DELLLPVL+E  K ETQLR+EAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   
Sbjct: 1256 KSDELLLPVLRESEKRETQLRMEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDGM 1315

Query: 1745 QVGSESRKKRKVRP 1786
            Q  S+SR+KR+  P
Sbjct: 1316 QQVSKSRRKRRASP 1329


>gb|KJB11468.1| hypothetical protein B456_001G260400 [Gossypium raimondii]
          Length = 1470

 Score =  577 bits (1486), Expect = e-161
 Identities = 333/614 (54%), Positives = 403/614 (65%), Gaps = 29/614 (4%)
 Frame = +2

Query: 32   EKDMSVSSNMPLNDVLHSEALCMTVDGVKQLETLVQKDTLQINDSPEKHSGSFTETRVDT 211
            EK  + +S+ P + V      C  +D  ++  T+ +    +  +SPE  S      +  T
Sbjct: 721  EKGDTGASSFPGDAVNWQNKSCENLDRPRKPCTVNEPSISETFNSPESPSPVHNSDKNMT 780

Query: 212  --------KDGYQDLTLGHHEVIEDGYVCLETSHVEGTTNLKL-MEVKTTGQEKCLD--- 355
                     DG       H+E  E  +V      V+  T   L +  +  G     D   
Sbjct: 781  ILSKFSERSDGSHSEQSRHNETAE--FVATLEKEVDFPTGKHLDVSKEVDGLSTISDSWF 838

Query: 356  KSNQQEKEATFGEY---------THGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSR 508
            K N    +A  G+          T    + S+  SD  +S   ++L      + EA PS+
Sbjct: 839  KDNSHSFDAAHGDIPDTIQVDKKTGSEDEPSNLVSDNKSSIEAEILDQDKKIDFEAKPSQ 898

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVSKQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQL 688
             S +  N +    + +     ++   +QEL  D T     +K  Q+ D     GN  +++
Sbjct: 899  QSVDTVNLSIPTVQSSANKVISDLHIEQELSGDITYENCVNKAEQHTDMSTIKGNDNEEI 958

Query: 689  ERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 868
            + S+ASLDEE+L+L QE +++ DEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME
Sbjct: 959  KFSKASLDEELLILDQECINMVDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 1018

Query: 869  AEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTRE 1048
            AEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE ELGLTRE
Sbjct: 1019 AEAQCAYMELTNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTRE 1078

Query: 1049 KLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHA 1228
            KL RMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGL KFREW+ESPDP+ILGKLN   
Sbjct: 1079 KLMRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQE 1138

Query: 1229 GHNAGKRKLKACSNGADGLTSNVDGESAESVVRGHDE--------QQSVDDLPDIKQIFM 1384
            G +A KR  K+     +G  ++  G  + +     D+         QS D   DIKQIFM
Sbjct: 1139 GSSARKRGPKSTEKDVNGTKTSTRGSESNNGTSSLDQNSFQADKNMQSTDCTDDIKQIFM 1198

Query: 1385 DKHRNVSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQ 1564
            DKHRNVSKNWHIPSSFPSE VISAY+ PQVD STEPF+WG+PDLFVLRKLCWE+FGW +Q
Sbjct: 1199 DKHRNVSKNWHIPSSFPSEAVISAYSLPQVDKSTEPFTWGRPDLFVLRKLCWEKFGWGSQ 1258

Query: 1565 KADELLLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPS 1744
            K+DELLLPVL+E  K ETQLR+EAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   
Sbjct: 1259 KSDELLLPVLRESEKRETQLRMEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDGM 1318

Query: 1745 QVGSESRKKRKVRP 1786
            Q  S+SR+KR+  P
Sbjct: 1319 QQVSKSRRKRRASP 1332


>gb|KJB11467.1| hypothetical protein B456_001G260400 [Gossypium raimondii]
          Length = 1666

 Score =  577 bits (1486), Expect = e-161
 Identities = 333/614 (54%), Positives = 403/614 (65%), Gaps = 29/614 (4%)
 Frame = +2

Query: 32   EKDMSVSSNMPLNDVLHSEALCMTVDGVKQLETLVQKDTLQINDSPEKHSGSFTETRVDT 211
            EK  + +S+ P + V      C  +D  ++  T+ +    +  +SPE  S      +  T
Sbjct: 684  EKGDTGASSFPGDAVNWQNKSCENLDRPRKPCTVNEPSISETFNSPESPSPVHNSDKNMT 743

Query: 212  --------KDGYQDLTLGHHEVIEDGYVCLETSHVEGTTNLKL-MEVKTTGQEKCLD--- 355
                     DG       H+E  E  +V      V+  T   L +  +  G     D   
Sbjct: 744  ILSKFSERSDGSHSEQSRHNETAE--FVATLEKEVDFPTGKHLDVSKEVDGLSTISDSWF 801

Query: 356  KSNQQEKEATFGEY---------THGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSR 508
            K N    +A  G+          T    + S+  SD  +S   ++L      + EA PS+
Sbjct: 802  KDNSHSFDAAHGDIPDTIQVDKKTGSEDEPSNLVSDNKSSIEAEILDQDKKIDFEAKPSQ 861

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVSKQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQL 688
             S +  N +    + +     ++   +QEL  D T     +K  Q+ D     GN  +++
Sbjct: 862  QSVDTVNLSIPTVQSSANKVISDLHIEQELSGDITYENCVNKAEQHTDMSTIKGNDNEEI 921

Query: 689  ERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 868
            + S+ASLDEE+L+L QE +++ DEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME
Sbjct: 922  KFSKASLDEELLILDQECINMVDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 981

Query: 869  AEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTRE 1048
            AEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE ELGLTRE
Sbjct: 982  AEAQCAYMELTNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTRE 1041

Query: 1049 KLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHA 1228
            KL RMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGL KFREW+ESPDP+ILGKLN   
Sbjct: 1042 KLMRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQE 1101

Query: 1229 GHNAGKRKLKACSNGADGLTSNVDGESAESVVRGHDE--------QQSVDDLPDIKQIFM 1384
            G +A KR  K+     +G  ++  G  + +     D+         QS D   DIKQIFM
Sbjct: 1102 GSSARKRGPKSTEKDVNGTKTSTRGSESNNGTSSLDQNSFQADKNMQSTDCTDDIKQIFM 1161

Query: 1385 DKHRNVSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQ 1564
            DKHRNVSKNWHIPSSFPSE VISAY+ PQVD STEPF+WG+PDLFVLRKLCWE+FGW +Q
Sbjct: 1162 DKHRNVSKNWHIPSSFPSEAVISAYSLPQVDKSTEPFTWGRPDLFVLRKLCWEKFGWGSQ 1221

Query: 1565 KADELLLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPS 1744
            K+DELLLPVL+E  K ETQLR+EAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   
Sbjct: 1222 KSDELLLPVLRESEKRETQLRMEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDGM 1281

Query: 1745 QVGSESRKKRKVRP 1786
            Q  S+SR+KR+  P
Sbjct: 1282 QQVSKSRRKRRASP 1295


>gb|KJB11466.1| hypothetical protein B456_001G260400 [Gossypium raimondii]
          Length = 1669

 Score =  577 bits (1486), Expect = e-161
 Identities = 333/614 (54%), Positives = 403/614 (65%), Gaps = 29/614 (4%)
 Frame = +2

Query: 32   EKDMSVSSNMPLNDVLHSEALCMTVDGVKQLETLVQKDTLQINDSPEKHSGSFTETRVDT 211
            EK  + +S+ P + V      C  +D  ++  T+ +    +  +SPE  S      +  T
Sbjct: 687  EKGDTGASSFPGDAVNWQNKSCENLDRPRKPCTVNEPSISETFNSPESPSPVHNSDKNMT 746

Query: 212  --------KDGYQDLTLGHHEVIEDGYVCLETSHVEGTTNLKL-MEVKTTGQEKCLD--- 355
                     DG       H+E  E  +V      V+  T   L +  +  G     D   
Sbjct: 747  ILSKFSERSDGSHSEQSRHNETAE--FVATLEKEVDFPTGKHLDVSKEVDGLSTISDSWF 804

Query: 356  KSNQQEKEATFGEY---------THGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSR 508
            K N    +A  G+          T    + S+  SD  +S   ++L      + EA PS+
Sbjct: 805  KDNSHSFDAAHGDIPDTIQVDKKTGSEDEPSNLVSDNKSSIEAEILDQDKKIDFEAKPSQ 864

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVSKQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQL 688
             S +  N +    + +     ++   +QEL  D T     +K  Q+ D     GN  +++
Sbjct: 865  QSVDTVNLSIPTVQSSANKVISDLHIEQELSGDITYENCVNKAEQHTDMSTIKGNDNEEI 924

Query: 689  ERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 868
            + S+ASLDEE+L+L QE +++ DEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME
Sbjct: 925  KFSKASLDEELLILDQECINMVDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 984

Query: 869  AEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTRE 1048
            AEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE ELGLTRE
Sbjct: 985  AEAQCAYMELTNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTRE 1044

Query: 1049 KLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHA 1228
            KL RMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGL KFREW+ESPDP+ILGKLN   
Sbjct: 1045 KLMRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQE 1104

Query: 1229 GHNAGKRKLKACSNGADGLTSNVDGESAESVVRGHDE--------QQSVDDLPDIKQIFM 1384
            G +A KR  K+     +G  ++  G  + +     D+         QS D   DIKQIFM
Sbjct: 1105 GSSARKRGPKSTEKDVNGTKTSTRGSESNNGTSSLDQNSFQADKNMQSTDCTDDIKQIFM 1164

Query: 1385 DKHRNVSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQ 1564
            DKHRNVSKNWHIPSSFPSE VISAY+ PQVD STEPF+WG+PDLFVLRKLCWE+FGW +Q
Sbjct: 1165 DKHRNVSKNWHIPSSFPSEAVISAYSLPQVDKSTEPFTWGRPDLFVLRKLCWEKFGWGSQ 1224

Query: 1565 KADELLLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPS 1744
            K+DELLLPVL+E  K ETQLR+EAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   
Sbjct: 1225 KSDELLLPVLRESEKRETQLRMEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDGM 1284

Query: 1745 QVGSESRKKRKVRP 1786
            Q  S+SR+KR+  P
Sbjct: 1285 QQVSKSRRKRRASP 1298


>gb|KJB11465.1| hypothetical protein B456_001G260400 [Gossypium raimondii]
          Length = 1667

 Score =  577 bits (1486), Expect = e-161
 Identities = 333/614 (54%), Positives = 403/614 (65%), Gaps = 29/614 (4%)
 Frame = +2

Query: 32   EKDMSVSSNMPLNDVLHSEALCMTVDGVKQLETLVQKDTLQINDSPEKHSGSFTETRVDT 211
            EK  + +S+ P + V      C  +D  ++  T+ +    +  +SPE  S      +  T
Sbjct: 685  EKGDTGASSFPGDAVNWQNKSCENLDRPRKPCTVNEPSISETFNSPESPSPVHNSDKNMT 744

Query: 212  --------KDGYQDLTLGHHEVIEDGYVCLETSHVEGTTNLKL-MEVKTTGQEKCLD--- 355
                     DG       H+E  E  +V      V+  T   L +  +  G     D   
Sbjct: 745  ILSKFSERSDGSHSEQSRHNETAE--FVATLEKEVDFPTGKHLDVSKEVDGLSTISDSWF 802

Query: 356  KSNQQEKEATFGEY---------THGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSR 508
            K N    +A  G+          T    + S+  SD  +S   ++L      + EA PS+
Sbjct: 803  KDNSHSFDAAHGDIPDTIQVDKKTGSEDEPSNLVSDNKSSIEAEILDQDKKIDFEAKPSQ 862

Query: 509  LSSEITNENFNFQEGAYIDQTTNNVSKQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQL 688
             S +  N +    + +     ++   +QEL  D T     +K  Q+ D     GN  +++
Sbjct: 863  QSVDTVNLSIPTVQSSANKVISDLHIEQELSGDITYENCVNKAEQHTDMSTIKGNDNEEI 922

Query: 689  ERSEASLDEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 868
            + S+ASLDEE+L+L QE +++ DEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME
Sbjct: 923  KFSKASLDEELLILDQECINMVDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPME 982

Query: 869  AEAQCAYMELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTRE 1048
            AEAQCAYMEL NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE ELGLTRE
Sbjct: 983  AEAQCAYMELTNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTRE 1042

Query: 1049 KLTRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHA 1228
            KL RMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGL KFREW+ESPDP+ILGKLN   
Sbjct: 1043 KLMRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFREWIESPDPTILGKLNVQE 1102

Query: 1229 GHNAGKRKLKACSNGADGLTSNVDGESAESVVRGHDE--------QQSVDDLPDIKQIFM 1384
            G +A KR  K+     +G  ++  G  + +     D+         QS D   DIKQIFM
Sbjct: 1103 GSSARKRGPKSTEKDVNGTKTSTRGSESNNGTSSLDQNSFQADKNMQSTDCTDDIKQIFM 1162

Query: 1385 DKHRNVSKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQ 1564
            DKHRNVSKNWHIPSSFPSE VISAY+ PQVD STEPF+WG+PDLFVLRKLCWE+FGW +Q
Sbjct: 1163 DKHRNVSKNWHIPSSFPSEAVISAYSLPQVDKSTEPFTWGRPDLFVLRKLCWEKFGWGSQ 1222

Query: 1565 KADELLLPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPS 1744
            K+DELLLPVL+E  K ETQLR+EAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   
Sbjct: 1223 KSDELLLPVLRESEKRETQLRMEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDGM 1282

Query: 1745 QVGSESRKKRKVRP 1786
            Q  S+SR+KR+  P
Sbjct: 1283 QQVSKSRRKRRASP 1296


>gb|KHG04183.1| DNA repair UVH3 -like protein [Gossypium arboreum]
          Length = 1697

 Score =  575 bits (1483), Expect = e-161
 Identities = 309/485 (63%), Positives = 361/485 (74%), Gaps = 27/485 (5%)
 Frame = +2

Query: 413  KISSHASDA------VASDLTDVLVDAHTNNSEAAPSRLSSEITNENFNFQEGA------ 556
            K++SH+ DA      V+ +    LV+ +T++ EA       +I  E    Q+        
Sbjct: 842  KVNSHSFDAAHDKKTVSENEPSNLVNVNTSSVEAEILDQDKKIDFEAKPSQQSVDTVDLS 901

Query: 557  --YIDQTTNNVS-----KQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQLERSEASLDE 715
               +  + N V      +QEL  D T     +K  Q+ D     GN  ++++ S+ASLDE
Sbjct: 902  IPTVQSSANKVIFDLHIEQELSGDITYENCVNKAEQHTDMSTIKGNDNEEIKFSKASLDE 961

Query: 716  EMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYME 895
            E+L+L QE +++ DEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYME
Sbjct: 962  ELLILDQECINMVDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYME 1021

Query: 896  LVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTREKLTRMALLL 1075
            L NLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE ELGLTREKL RMALLL
Sbjct: 1022 LTNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTREKLMRMALLL 1081

Query: 1076 GSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHAGHNAGKRKL 1255
            GSDYTEGVSGIGIVNAIEVVNAFPEEDGL KF+EW+ESPDP+ILGKLN   G +A KR  
Sbjct: 1082 GSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFQEWIESPDPTILGKLNVQEGSSAWKRGP 1141

Query: 1256 KACSNGADGLTSNVDGESAESVVRGHDE--------QQSVDDLPDIKQIFMDKHRNVSKN 1411
            K+     +   ++  G  + +     D+         QS D + DIKQIFMDKHRNVSKN
Sbjct: 1142 KSTEKDVNSTKTSTGGSESNNGASSLDQNSFQADKNMQSTDCINDIKQIFMDKHRNVSKN 1201

Query: 1412 WHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQKADELLLPV 1591
            WHIPSSFPSE VISAY+ PQVD STEPF+WG+PDLFVLRKLCWE+FGW +QK+DELLLPV
Sbjct: 1202 WHIPSSFPSEAVISAYSLPQVDKSTEPFTWGRPDLFVLRKLCWEKFGWGSQKSDELLLPV 1261

Query: 1592 LKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPSQVGSESRKK 1771
            L+EY K ETQLR+EAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   Q  S+SR K
Sbjct: 1262 LREYEKRETQLRMEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDGMQQASKSRNK 1321

Query: 1772 RKVRP 1786
            R+V P
Sbjct: 1322 RRVSP 1326


>ref|XP_007031408.1| DNA-repair protein UVH3, putative isoform 2, partial [Theobroma
            cacao] gi|508710437|gb|EOY02334.1| DNA-repair protein
            UVH3, putative isoform 2, partial [Theobroma cacao]
          Length = 1239

 Score =  575 bits (1483), Expect = e-161
 Identities = 309/488 (63%), Positives = 362/488 (74%), Gaps = 9/488 (1%)
 Frame = +2

Query: 350  LDKSNQQEKEATFGEYTHGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSRLSSEITN 529
            +DK N  E E +          + S     V ++L  ++ D   N+ EA     S EI +
Sbjct: 635  VDKKNDSEGEPS---------TLVSEKKSEVETELCSMVEDKK-NDLEAKSLHQSIEIVD 684

Query: 530  ENFNFQEGAYIDQTTNNVSKQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQLERSEASL 709
             +    + +    T++   +QELV D+T     ++  Q  D     GN    +E ++ SL
Sbjct: 685  SSIPVVQSSVNKATSDIHIEQELVGDRTYENYVNEAEQETDMANVKGNDYADVEFTQVSL 744

Query: 710  DEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAY 889
            DEE+L+L QE M+LGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAY
Sbjct: 745  DEELLILGQECMNLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAY 804

Query: 890  MELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTREKLTRMAL 1069
            MEL N+VDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE E+GLTREKL RMAL
Sbjct: 805  MELTNIVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKEIGLTREKLMRMAL 864

Query: 1070 LLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHAGHNAGKR 1249
            LLGSDYTEGVSGIGIVNAIEVVNAFPEEDGL KFREW+ESPDP+ILGKLN   G +A KR
Sbjct: 865  LLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFREWIESPDPAILGKLNVQEGSSARKR 924

Query: 1250 KLK-------ACSNGADGLTSNVDGESA--ESVVRGHDEQQSVDDLPDIKQIFMDKHRNV 1402
              K       +         S ++G S+  +++ +     QS D + DIKQIFMDKHRNV
Sbjct: 925  GSKFSDKDVISAKTSMRDSGSPIEGLSSFDQNISQADKNTQSTDCIDDIKQIFMDKHRNV 984

Query: 1403 SKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQKADELL 1582
            SKNWHIPSSFPSE VIS Y  PQVD STEPF+WG+PDLFVLRKLCW++FGW +QK+D+LL
Sbjct: 985  SKNWHIPSSFPSEAVISEYCSPQVDKSTEPFTWGRPDLFVLRKLCWDKFGWGSQKSDDLL 1044

Query: 1583 LPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPSQVGSES 1762
            LPVL+EY K ETQLRLEAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   Q  S+S
Sbjct: 1045 LPVLREYEKRETQLRLEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDAMQQVSKS 1104

Query: 1763 RKKRKVRP 1786
            RK+R+V P
Sbjct: 1105 RKRRRVSP 1112


>ref|XP_007031407.1| DNA-repair protein UVH3, putative isoform 1 [Theobroma cacao]
            gi|508710436|gb|EOY02333.1| DNA-repair protein UVH3,
            putative isoform 1 [Theobroma cacao]
          Length = 1670

 Score =  575 bits (1483), Expect = e-161
 Identities = 309/488 (63%), Positives = 362/488 (74%), Gaps = 9/488 (1%)
 Frame = +2

Query: 350  LDKSNQQEKEATFGEYTHGSAKISSHASDAVASDLTDVLVDAHTNNSEAAPSRLSSEITN 529
            +DK N  E E +          + S     V ++L  ++ D   N+ EA     S EI +
Sbjct: 860  VDKKNDSEGEPS---------TLVSEKKSEVETELCSMVEDKK-NDLEAKSLHQSIEIVD 909

Query: 530  ENFNFQEGAYIDQTTNNVSKQELVKDQTCGMPPDKGWQYRDEIASHGNVEQQLERSEASL 709
             +    + +    T++   +QELV D+T     ++  Q  D     GN    +E ++ SL
Sbjct: 910  SSIPVVQSSVNKATSDIHIEQELVGDRTYENYVNEAEQETDMANVKGNDYADVEFTQVSL 969

Query: 710  DEEMLLLRQERMDLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAY 889
            DEE+L+L QE M+LGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAY
Sbjct: 970  DEELLILGQECMNLGDEQRKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAY 1029

Query: 890  MELVNLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIETELGLTREKLTRMAL 1069
            MEL N+VDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIE E+GLTREKL RMAL
Sbjct: 1030 MELTNIVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKEIGLTREKLMRMAL 1089

Query: 1070 LLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFREWLESPDPSILGKLNAHAGHNAGKR 1249
            LLGSDYTEGVSGIGIVNAIEVVNAFPEEDGL KFREW+ESPDP+ILGKLN   G +A KR
Sbjct: 1090 LLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLHKFREWIESPDPAILGKLNVQEGSSARKR 1149

Query: 1250 KLK-------ACSNGADGLTSNVDGESA--ESVVRGHDEQQSVDDLPDIKQIFMDKHRNV 1402
              K       +         S ++G S+  +++ +     QS D + DIKQIFMDKHRNV
Sbjct: 1150 GSKFSDKDVISAKTSMRDSGSPIEGLSSFDQNISQADKNTQSTDCIDDIKQIFMDKHRNV 1209

Query: 1403 SKNWHIPSSFPSEMVISAYTFPQVDNSTEPFSWGKPDLFVLRKLCWERFGWSNQKADELL 1582
            SKNWHIPSSFPSE VIS Y  PQVD STEPF+WG+PDLFVLRKLCW++FGW +QK+D+LL
Sbjct: 1210 SKNWHIPSSFPSEAVISEYCSPQVDKSTEPFTWGRPDLFVLRKLCWDKFGWGSQKSDDLL 1269

Query: 1583 LPVLKEYSKHETQLRLEAFYTFNERFAKIRSQRIKKAVKGITGNQASELMDHPSQVGSES 1762
            LPVL+EY K ETQLRLEAFYTFNERFAKIRS+RIKKAVKGITGNQ+SEL+D   Q  S+S
Sbjct: 1270 LPVLREYEKRETQLRLEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDDAMQQVSKS 1329

Query: 1763 RKKRKVRP 1786
            RK+R+V P
Sbjct: 1330 RKRRRVSP 1337