BLASTX nr result
ID: Cinnamomum24_contig00005576
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum24_contig00005576
(1677 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010267715.1| PREDICTED: RNA pseudouridine synthase 6, chl... 667 0.0
ref|XP_002264641.1| PREDICTED: RNA pseudouridine synthase 6, chl... 666 0.0
ref|XP_007213527.1| hypothetical protein PRUPE_ppa020640mg [Prun... 654 0.0
ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citr... 653 0.0
ref|XP_008224796.1| PREDICTED: RNA pseudouridine synthase 6, chl... 650 0.0
ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chl... 649 0.0
ref|XP_011037691.1| PREDICTED: RNA pseudouridine synthase 6, chl... 649 0.0
ref|XP_012444884.1| PREDICTED: RNA pseudouridine synthase 6, chl... 644 0.0
gb|KJB57712.1| hypothetical protein B456_009G176900 [Gossypium r... 644 0.0
ref|XP_002304926.2| pseudouridine synthase family protein [Popul... 644 0.0
emb|CDP04372.1| unnamed protein product [Coffea canephora] 642 0.0
gb|KHG01920.1| hypothetical protein F383_22898 [Gossypium arboreum] 642 0.0
gb|KDO75505.1| hypothetical protein CISIN_1g011530mg [Citrus sin... 640 0.0
ref|XP_011086178.1| PREDICTED: RNA pseudouridine synthase 6, chl... 639 e-180
gb|KHG01919.1| hypothetical protein F383_22898 [Gossypium arboreum] 635 e-179
ref|XP_012444881.1| PREDICTED: RNA pseudouridine synthase 6, chl... 635 e-179
ref|XP_007026021.1| Pseudouridine synthase family protein [Theob... 635 e-179
ref|XP_008800212.1| PREDICTED: RNA pseudouridine synthase 6, chl... 634 e-179
ref|XP_004293270.1| PREDICTED: RNA pseudouridine synthase 6, chl... 633 e-178
ref|XP_009357422.1| PREDICTED: RNA pseudouridine synthase 6, chl... 629 e-177
>ref|XP_010267715.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Nelumbo
nucifera]
Length = 484
Score = 667 bits (1722), Expect = 0.0
Identities = 326/473 (68%), Positives = 377/473 (79%), Gaps = 14/473 (2%)
Frame = -1
Query: 1542 SNCFVSSLLTPNPRNLAAPISLVRTLA-STHAFKKRLRXXXXXXXXXXXXXV-CSSSNSE 1369
S F +SL + R A ++LVR LA S + +++R + C +S ++
Sbjct: 17 SPVFCASLGALHCRAFAGSVALVRRLAASNNVYRRRDKNLGRCSWGSSHSRFSCCNSRTD 76
Query: 1368 VAFTNTNHSSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY------------L 1225
V+ ++ S+NGYPEY RLLPCPL+NGPPR+EHLVVSEGG VL+YI L
Sbjct: 77 VSAPVSSPSANGYPEYTRLLPCPLQNGPPRIEHLVVSEGGPVLEYISKALDLPPLFVADL 136
Query: 1224 IHFGAVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVREAQKTFRITHVN 1045
IHFGAVYYALVCPEPPP A PEQIRVYK VTAPSVL+ R SIKGKT+REAQKTFRITH+N
Sbjct: 137 IHFGAVYYALVCPEPPPNAMPEQIRVYKEVTAPSVLKNRLSIKGKTIREAQKTFRITHIN 196
Query: 1044 EFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCA 865
EFVEAGTYLRVHVHPKRFPRCYEIDW+SRIIAVTESYVVLDKPAGTSVGGT+DNIEESC
Sbjct: 197 EFVEAGTYLRVHVHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTSDNIEESCV 256
Query: 864 TFASQALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQVKKLYXXXXXXXX 685
TFA++ALGL+ PLKTTHQIDNCTEGCVVLARTK+YCSIFH KIREK+VKKLY
Sbjct: 257 TFATRALGLTIPLKTTHQIDNCTEGCVVLARTKEYCSIFHGKIREKKVKKLYLALAAAPV 316
Query: 684 XVGIITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPSNATAKSYCLED 505
VG ITH+MRP+NIAPR++S +DFI WHLC+L+VLECKEVPWP++ K YC++D
Sbjct: 317 PVGTITHHMRPINIAPRLIS-----KDFIKGWHLCKLEVLECKEVPWPNSNIEKEYCIDD 371
Query: 504 CGWSSKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEKMNPSINPFGRF 325
CGW K VAYECKINLLTGRTHQVRAQLAACGAP+VGDSMYMPA +AE NP +NPFG +
Sbjct: 372 CGWPQKDVAYECKINLLTGRTHQVRAQLAACGAPIVGDSMYMPAALAEMTNPGLNPFGEY 431
Query: 324 NNQYMSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGAPWWR 166
+Y +DD+R++AIEEWI HGKEP IAIGLQACQISWD+GE FYEAG+PWWR
Sbjct: 432 GMKYTNDDNRTKAIEEWIVHHGKEPRIAIGLQACQISWDEGEHFYEAGSPWWR 484
>ref|XP_002264641.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Vitis
vinifera] gi|302144082|emb|CBI23187.3| unnamed protein
product [Vitis vinifera]
Length = 472
Score = 666 bits (1719), Expect = 0.0
Identities = 325/475 (68%), Positives = 378/475 (79%), Gaps = 12/475 (2%)
Frame = -1
Query: 1557 LFTFLSNCFVSSLLTPNPRNLAAPISLVRTLASTHAFKKRLRXXXXXXXXXXXXXVCSSS 1378
L + ++ VSSL N R+ P++L RTLAS++ F +R + ++S
Sbjct: 6 LTSIFTSGLVSSLWNSNCRSFGTPVALARTLASSNVFSRRHKRVVWCSNNPTCTRELTAS 65
Query: 1377 NSEVAFTNTNHSSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY---------- 1228
+ NT+ S NGYPEY+RLLPCP +NGPPRVEHLVVSEGG VLDYI
Sbjct: 66 SDSA---NTS-SVNGYPEYHRLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALDLPPLFV 121
Query: 1227 --LIHFGAVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVREAQKTFRIT 1054
LIHFGAVYYALVCPEPPP ATPEQ+R++K VTAPSVL+KR SIKGKT+REAQKTFRIT
Sbjct: 122 ADLIHFGAVYYALVCPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKTFRIT 181
Query: 1053 HVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEE 874
VNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEE
Sbjct: 182 DVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEE 241
Query: 873 SCATFASQALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQVKKLYXXXXX 694
SCATFA++ALGL+TPL+TTHQIDNCTEGCVVLARTK+YCS+FH KIREK+VKKLY
Sbjct: 242 SCATFATRALGLTTPLRTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYRALAA 301
Query: 693 XXXXVGIITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPSNATAKSYC 514
+GI+THYMRPVNIAPR++S EDFI W+LCQL+VLECKEVPWPS + YC
Sbjct: 302 APMPIGIVTHYMRPVNIAPRLIS-----EDFIKGWYLCQLEVLECKEVPWPSTLIEEKYC 356
Query: 513 LEDCGWSSKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEKMNPSINPF 334
+ED GW K+ A++CKINLLTGRTHQ+RAQLAACGAP+VGDSMYMPA IAE +P +NPF
Sbjct: 357 IEDRGWPLKNSAFKCKINLLTGRTHQIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNPF 416
Query: 333 GRFNNQYMSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGAPWW 169
G++ +Y +++DR A+ EWIA HGKEP +AIGLQACQISWDDGE FY+AG+PWW
Sbjct: 417 GKYKKKYTTENDRETAVAEWIAQHGKEPGVAIGLQACQISWDDGEHFYKAGSPWW 471
>ref|XP_007213527.1| hypothetical protein PRUPE_ppa020640mg [Prunus persica]
gi|462409392|gb|EMJ14726.1| hypothetical protein
PRUPE_ppa020640mg [Prunus persica]
Length = 477
Score = 654 bits (1686), Expect = 0.0
Identities = 317/474 (66%), Positives = 365/474 (77%), Gaps = 20/474 (4%)
Frame = -1
Query: 1527 SSLLTPNPRNLAAPISLVRTLASTHA--------FKKRLRXXXXXXXXXXXXXVCSSSNS 1372
+S+L R+ +AP++LVRTLA TH +K C S
Sbjct: 7 TSMLANGCRSFSAPVALVRTLALTHVALSEHANNYKHVKVACFSRSSKKRTTFACESLKQ 66
Query: 1371 EVAFTNTNHSSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY------------ 1228
V + S NGYPEY RLLPCP NGPPRVEHLVVSEGG VL+YI
Sbjct: 67 GVTQPTSVSSVNGYPEYTRLLPCPSHNGPPRVEHLVVSEGGPVLEYICKTLDLPPQFVAD 126
Query: 1227 LIHFGAVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVREAQKTFRITHV 1048
LIHFGAVYYALVCP+PPP ATPEQ+RV+K VTAPSVL+ RASIKGKTVREAQKTFRITH
Sbjct: 127 LIHFGAVYYALVCPKPPPTATPEQMRVFKEVTAPSVLKNRASIKGKTVREAQKTFRITHA 186
Query: 1047 NEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESC 868
+EFVEAGTYLRVHVHPKRFPRCY+IDWKSRIIAV+E +VVLDKPAGT+VGGTTDNIEESC
Sbjct: 187 DEFVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVSEEFVVLDKPAGTTVGGTTDNIEESC 246
Query: 867 ATFASQALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQVKKLYXXXXXXX 688
ATFA++ALGL+TPL TTHQIDNCTEGCVVLARTK+YCS+FH KIREK+VKKLY
Sbjct: 247 ATFATRALGLTTPLNTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALAAAP 306
Query: 687 XXVGIITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPSNATAKSYCLE 508
GIITHYMRP+N+APR++S EDFI RW LCQL+V+ECKE+PWP+ + YC+E
Sbjct: 307 VPTGIITHYMRPINVAPRLIS-----EDFIERWSLCQLEVMECKEIPWPNAVVEEKYCVE 361
Query: 507 DCGWSSKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEKMNPSINPFGR 328
DCGW SK AYECKINLLTGRTHQVRAQLAACGAP+VGDSMYMPA +AE +P +NPFG+
Sbjct: 362 DCGWPSKDYAYECKINLLTGRTHQVRAQLAACGAPIVGDSMYMPAAVAEMESPGLNPFGQ 421
Query: 327 FNNQYMSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGAPWWR 166
+ Y +++D+ A+ EWIA HGKEPN+AIGLQACQISWDDG+ +EA APWWR
Sbjct: 422 YKKHYTTENDKETAVAEWIARHGKEPNVAIGLQACQISWDDGKHTFEARAPWWR 475
>ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citrus clementina]
gi|557551677|gb|ESR62306.1| hypothetical protein
CICLE_v10015055mg [Citrus clementina]
Length = 487
Score = 653 bits (1685), Expect = 0.0
Identities = 328/484 (67%), Positives = 376/484 (77%), Gaps = 24/484 (4%)
Frame = -1
Query: 1545 LSNCFVSSLLTPNPRNLAAPISLVRTLASTHAFKKR---LRXXXXXXXXXXXXXVCSSSN 1375
+S+ SS+ T N R+L AP+SL+RTLASTHA R VC S
Sbjct: 1 MSSVSFSSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWK 60
Query: 1374 SEVAFTNTNH---------SSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY-- 1228
V FT+T+ SS GYPEY+RLLPCP +N PPRVEHLVVSEGG VL+YI
Sbjct: 61 RHV-FTHTDTTATAAAATPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRE 119
Query: 1227 ----------LIHFGAVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVRE 1078
LIHFGAVYYALVCP+PP ATPEQ+RV+K VT PSVL KR+SIKGKTVRE
Sbjct: 120 LNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVRE 179
Query: 1077 AQKTFRITHVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVG 898
AQKTFRITHV++ VEAGTYLRVHVHPKRFPRCY+IDWKSRIIAVTES+VVLDKPAGTSVG
Sbjct: 180 AQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVG 239
Query: 897 GTTDNIEESCATFASQALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQVK 718
GTTDNIEESCATFAS+ALGL+TPL+TTHQIDNCTEGCVVLART++YCSIFHRKIREK+VK
Sbjct: 240 GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVK 299
Query: 717 KLYXXXXXXXXXVGIITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPS 538
KLY VGI+THYMRP+NIAPR++S EDFI W+LCQL+V+ECK+VPWP
Sbjct: 300 KLYLALTAAPLPVGIMTHYMRPINIAPRLIS-----EDFIKGWYLCQLEVMECKKVPWPD 354
Query: 537 NATAKSYCLEDCGWSSKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEK 358
K+Y +EDCGW S+ AYECKI LLTGRTHQVRAQLAACGAP+VGDSMYMPA IA+
Sbjct: 355 ATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQL 414
Query: 357 MNPSINPFGRFNNQYMSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGA 178
+P +NPFG+ +Y SDDD+ A+ EWI+ HGKEP++AIGLQAC ISWDDGEC YEA +
Sbjct: 415 SSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGKEPSVAIGLQACHISWDDGECCYEARS 474
Query: 177 PWWR 166
PWWR
Sbjct: 475 PWWR 478
>ref|XP_008224796.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Prunus mume]
Length = 469
Score = 650 bits (1677), Expect = 0.0
Identities = 316/472 (66%), Positives = 362/472 (76%), Gaps = 20/472 (4%)
Frame = -1
Query: 1521 LLTPNPRNLAAPISLVRTLASTHA--------FKKRLRXXXXXXXXXXXXXVCSSSNSEV 1366
+L R+ +AP++LVRTLA TH +K C S +V
Sbjct: 1 MLASGCRSFSAPVALVRTLALTHVALSEHANNYKHVKVACFSRSSKKRTTFACKSLKQDV 60
Query: 1365 AFTNTNHSSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY------------LI 1222
S NGYPEY RLLPCP NGPPRVEHLVVSEGG VL+YI LI
Sbjct: 61 TQPTAVSSVNGYPEYTRLLPCPSHNGPPRVEHLVVSEGGPVLEYICKTLDLPPQFVADLI 120
Query: 1221 HFGAVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVREAQKTFRITHVNE 1042
HFGAVYYALVCP+PPP ATPEQ+RV+K VT PSVL+KRASIKGKTVREAQKTFRIT +E
Sbjct: 121 HFGAVYYALVCPKPPPTATPEQMRVFKEVTEPSVLKKRASIKGKTVREAQKTFRITQADE 180
Query: 1041 FVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCAT 862
FVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAV+E +VVLDKPAGT+VGGTTDNIEESCAT
Sbjct: 181 FVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVSEEFVVLDKPAGTTVGGTTDNIEESCAT 240
Query: 861 FASQALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQVKKLYXXXXXXXXX 682
FA++ALGL+TPL TTHQIDNCTEGCVVLARTK+YCS+FH KIREK+VKKLY
Sbjct: 241 FATRALGLTTPLNTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALAAAPVP 300
Query: 681 VGIITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPSNATAKSYCLEDC 502
GIITHYMRP+N+APR++S EDFI RW LCQL+V+ECKEVPWP+ + YC+EDC
Sbjct: 301 TGIITHYMRPINVAPRLIS-----EDFIERWSLCQLEVMECKEVPWPNAVVEEKYCVEDC 355
Query: 501 GWSSKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEKMNPSINPFGRFN 322
GW SK AYECKINLLTGRTHQVRAQLAACGAP+VGDSMYMPA +AE +P +NPFG++
Sbjct: 356 GWPSKDYAYECKINLLTGRTHQVRAQLAACGAPIVGDSMYMPAAVAEMESPGLNPFGQYK 415
Query: 321 NQYMSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGAPWWR 166
Y +++D+ A+ +WIA HGKEPN+AIGLQACQISWDDG+ +EA APWWR
Sbjct: 416 KHYTTENDKETAVAKWIARHGKEPNVAIGLQACQISWDDGKHTFEARAPWWR 467
>ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
X1 [Citrus sinensis] gi|568827302|ref|XP_006468003.1|
PREDICTED: RNA pseudouridine synthase 6,
chloroplastic-like isoform X2 [Citrus sinensis]
Length = 487
Score = 649 bits (1675), Expect = 0.0
Identities = 327/484 (67%), Positives = 374/484 (77%), Gaps = 24/484 (4%)
Frame = -1
Query: 1545 LSNCFVSSLLTPNPRNLAAPISLVRTLASTHAFKKR---LRXXXXXXXXXXXXXVCSSSN 1375
+S+ SS+ T N R+L AP+SL+RTLASTHA R VC S
Sbjct: 1 MSSVSFSSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWK 60
Query: 1374 SEVAFTNTNH---------SSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY-- 1228
V FT+T+ SS GYPEY+RLLPCP +N PPRVEHLVVSEGG VL+YI
Sbjct: 61 RHV-FTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRE 119
Query: 1227 ----------LIHFGAVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVRE 1078
LIHFGAVYYALVCP+PP ATPEQ+RV+K VT PSVL KR+SIKGKTVRE
Sbjct: 120 LNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVRE 179
Query: 1077 AQKTFRITHVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVG 898
AQKTFRITHV++ VEAGTYLRVHVHPKRFPRCY+IDW SRIIAVTES+VVLDKPAGTSVG
Sbjct: 180 AQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVG 239
Query: 897 GTTDNIEESCATFASQALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQVK 718
GTTDNIEESCATFAS+ALGL+TPL+TTHQIDNCTEGCVVLART++YCSIFHRKIREK+VK
Sbjct: 240 GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVK 299
Query: 717 KLYXXXXXXXXXVGIITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPS 538
KLY VGI+THYMRP+NIAPR+VS EDFI W+LCQL+V+ECK+VPWP
Sbjct: 300 KLYLALTTAPLPVGIMTHYMRPINIAPRLVS-----EDFITGWYLCQLEVMECKKVPWPD 354
Query: 537 NATAKSYCLEDCGWSSKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEK 358
K+Y +EDCGW S+ AYECKI LLTGRTHQVRAQLAACGAP+VGDSMYMPA IA+
Sbjct: 355 ATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQL 414
Query: 357 MNPSINPFGRFNNQYMSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGA 178
+P +NPFG+ +Y SDDD+ A+ EWI+ HG EP++AIGLQAC ISWDDGEC YEA +
Sbjct: 415 SSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARS 474
Query: 177 PWWR 166
PWWR
Sbjct: 475 PWWR 478
>ref|XP_011037691.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Populus
euphratica]
Length = 467
Score = 649 bits (1674), Expect = 0.0
Identities = 308/467 (65%), Positives = 366/467 (78%), Gaps = 12/467 (2%)
Frame = -1
Query: 1530 VSSLLTPNPRNLAAPISLVRTLASTHAFKKRLRXXXXXXXXXXXXXVCSSSNSEVAFTNT 1351
++S+ + + R +AP++L+RTLAST A+ + C S ++A T
Sbjct: 6 LASIFSYSYRGFSAPVTLLRTLASTRAYSLN-KKALVWCSLSKRKFSCESLKQDIASTTA 64
Query: 1350 NHSSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY------------LIHFGAV 1207
S NGYPEY RLLPCP N PPR+EHLVVSE G VLDYI LIHFGAV
Sbjct: 65 TSSVNGYPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYICKALDLPPLFVADLIHFGAV 124
Query: 1206 YYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVREAQKTFRITHVNEFVEAG 1027
+YALVCP+PPP ATPEQIRV++ VTAPSVL+KRASIKGKTVREAQKTFRITHV++F+EAG
Sbjct: 125 HYALVCPQPPPTATPEQIRVFEEVTAPSVLKKRASIKGKTVREAQKTFRITHVDQFLEAG 184
Query: 1026 TYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFASQA 847
YLRVHVHPKRFPRCY+IDWKSRII VTES+VVLDKPAGTSVGGTTDNIEESCATFA++A
Sbjct: 185 MYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGGTTDNIEESCATFATRA 244
Query: 846 LGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQVKKLYXXXXXXXXXVGIIT 667
LGL+ PL+TTHQIDNCTEGCVVLAR+K+ CS+FH KIREK VKKLY +G++
Sbjct: 245 LGLTAPLRTTHQIDNCTEGCVVLARSKEDCSVFHGKIREKTVKKLYIALAASPVPIGVVN 304
Query: 666 HYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPSNATAKSYCLEDCGWSSK 487
HYMRP+N+APR+VS E+FI WHLCQL+V+ECK VPWP + YC++DCGW SK
Sbjct: 305 HYMRPINMAPRLVS-----EEFIKGWHLCQLEVMECKRVPWPDAVVEEKYCVQDCGWPSK 359
Query: 486 HVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEKMNPSINPFGRFNNQYMS 307
AYECKINLLTGRTHQ+RAQLAA GAP+VGDSMYMPA +AE ++P NPFG++ QY S
Sbjct: 360 DHAYECKINLLTGRTHQIRAQLAAVGAPLVGDSMYMPAAVAEMVSPGCNPFGKYKKQYTS 419
Query: 306 DDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGAPWWR 166
+DD++ A+EEW+ CHGKEPN+AIGLQACQISWDDG+ Y AG+PWWR
Sbjct: 420 EDDKAIAVEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPWWR 466
>ref|XP_012444884.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X2
[Gossypium raimondii]
Length = 477
Score = 644 bits (1660), Expect = 0.0
Identities = 321/469 (68%), Positives = 364/469 (77%), Gaps = 16/469 (3%)
Frame = -1
Query: 1524 SLLTPNPRNLAAPISLVRTLASTHAFKKRLRXXXXXXXXXXXXXV----CSSSNSEVAFT 1357
S+ + R+L+AP+S RTLAS+ +K R C SS +VA T
Sbjct: 12 SIFSNGYRSLSAPVSSWRTLASSSLYKHYKRNSKSAVFSCLSSSKIELSCLSSKVDVAQT 71
Query: 1356 NTNHSSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY------------LIHFG 1213
T S NGY +Y+RLLPCP ENGPPRVEHLVVSEGG VL+YI LIHFG
Sbjct: 72 TTT-SVNGYHKYDRLLPCPSENGPPRVEHLVVSEGGPVLEYICKSLDLPPLFVADLIHFG 130
Query: 1212 AVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVREAQKTFRITHVNEFVE 1033
AVYYALVCP+PPP ATPEQIR++K VTAPSVL KR SIKGKTVREAQKTFRITHV +FVE
Sbjct: 131 AVYYALVCPQPPPSATPEQIRIFKEVTAPSVLSKRTSIKGKTVREAQKTFRITHVEQFVE 190
Query: 1032 AGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFAS 853
AGTYLRVHVHPKRFPRCYEIDWKSRIIAVT+SYVVLDKPAGTSVGGT+DNIEESCATFAS
Sbjct: 191 AGTYLRVHVHPKRFPRCYEIDWKSRIIAVTDSYVVLDKPAGTSVGGTSDNIEESCATFAS 250
Query: 852 QALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQVKKLYXXXXXXXXXVGI 673
+ALG STPLKTTHQIDNCTEGCVVLARTK+YCSIFH KIREK+VKKLY +GI
Sbjct: 251 RALGFSTPLKTTHQIDNCTEGCVVLARTKEYCSIFHGKIREKKVKKLYLALTAAPVPIGI 310
Query: 672 ITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPSNATAKSYCLEDCGWS 493
ITHYMRP+N+APR+VS EDFI W+LC+L+V+ECKEVPWP + YC+ED W
Sbjct: 311 ITHYMRPINVAPRLVS-----EDFIKGWYLCKLEVMECKEVPWPDPVIQQKYCIEDSEWP 365
Query: 492 SKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEKMNPSINPFGRFNNQY 313
SK AYECKINLLTGRTHQVRAQLAACGAP+VGDSMYMPA IAE NP +NPFG++ +Y
Sbjct: 366 SKDRAYECKINLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAEMANPGLNPFGKY-KKY 424
Query: 312 MSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGAPWWR 166
++ D+ + +W A GKEP +AIGLQAC+ISWDDGE FYEA +PWWR
Sbjct: 425 TTESDKEMTVTKWFARFGKEPKVAIGLQACEISWDDGEHFYEARSPWWR 473
>gb|KJB57712.1| hypothetical protein B456_009G176900 [Gossypium raimondii]
gi|763790717|gb|KJB57713.1| hypothetical protein
B456_009G176900 [Gossypium raimondii]
Length = 475
Score = 644 bits (1660), Expect = 0.0
Identities = 321/469 (68%), Positives = 364/469 (77%), Gaps = 16/469 (3%)
Frame = -1
Query: 1524 SLLTPNPRNLAAPISLVRTLASTHAFKKRLRXXXXXXXXXXXXXV----CSSSNSEVAFT 1357
S+ + R+L+AP+S RTLAS+ +K R C SS +VA T
Sbjct: 10 SIFSNGYRSLSAPVSSWRTLASSSLYKHYKRNSKSAVFSCLSSSKIELSCLSSKVDVAQT 69
Query: 1356 NTNHSSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY------------LIHFG 1213
T S NGY +Y+RLLPCP ENGPPRVEHLVVSEGG VL+YI LIHFG
Sbjct: 70 TTT-SVNGYHKYDRLLPCPSENGPPRVEHLVVSEGGPVLEYICKSLDLPPLFVADLIHFG 128
Query: 1212 AVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVREAQKTFRITHVNEFVE 1033
AVYYALVCP+PPP ATPEQIR++K VTAPSVL KR SIKGKTVREAQKTFRITHV +FVE
Sbjct: 129 AVYYALVCPQPPPSATPEQIRIFKEVTAPSVLSKRTSIKGKTVREAQKTFRITHVEQFVE 188
Query: 1032 AGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFAS 853
AGTYLRVHVHPKRFPRCYEIDWKSRIIAVT+SYVVLDKPAGTSVGGT+DNIEESCATFAS
Sbjct: 189 AGTYLRVHVHPKRFPRCYEIDWKSRIIAVTDSYVVLDKPAGTSVGGTSDNIEESCATFAS 248
Query: 852 QALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQVKKLYXXXXXXXXXVGI 673
+ALG STPLKTTHQIDNCTEGCVVLARTK+YCSIFH KIREK+VKKLY +GI
Sbjct: 249 RALGFSTPLKTTHQIDNCTEGCVVLARTKEYCSIFHGKIREKKVKKLYLALTAAPVPIGI 308
Query: 672 ITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPSNATAKSYCLEDCGWS 493
ITHYMRP+N+APR+VS EDFI W+LC+L+V+ECKEVPWP + YC+ED W
Sbjct: 309 ITHYMRPINVAPRLVS-----EDFIKGWYLCKLEVMECKEVPWPDPVIQQKYCIEDSEWP 363
Query: 492 SKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEKMNPSINPFGRFNNQY 313
SK AYECKINLLTGRTHQVRAQLAACGAP+VGDSMYMPA IAE NP +NPFG++ +Y
Sbjct: 364 SKDRAYECKINLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAEMANPGLNPFGKY-KKY 422
Query: 312 MSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGAPWWR 166
++ D+ + +W A GKEP +AIGLQAC+ISWDDGE FYEA +PWWR
Sbjct: 423 TTESDKEMTVTKWFARFGKEPKVAIGLQACEISWDDGEHFYEARSPWWR 471
>ref|XP_002304926.2| pseudouridine synthase family protein [Populus trichocarpa]
gi|550340110|gb|EEE85437.2| pseudouridine synthase family
protein [Populus trichocarpa]
Length = 470
Score = 644 bits (1660), Expect = 0.0
Identities = 306/467 (65%), Positives = 365/467 (78%), Gaps = 12/467 (2%)
Frame = -1
Query: 1530 VSSLLTPNPRNLAAPISLVRTLASTHAFKKRLRXXXXXXXXXXXXXVCSSSNSEVAFTNT 1351
++S+ + + R+ +AP++L+RTLA T A+ + C S ++A T
Sbjct: 6 LASIFSYSYRSFSAPVTLLRTLAFTRAYSLN-KKALVWCSLSKRKLSCESLKQDIACTTA 64
Query: 1350 NHSSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY------------LIHFGAV 1207
S NGYPEY RLLPCP N PPR+EHLVVSE G VLDYI LIHFGAV
Sbjct: 65 TSSVNGYPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYICKALDLPPLFVADLIHFGAV 124
Query: 1206 YYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVREAQKTFRITHVNEFVEAG 1027
+YALVCP+PP ATPEQIRV++ VTAPSVL+KRASIKGKTVREAQKTFRITHV++F+EAG
Sbjct: 125 HYALVCPQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKTVREAQKTFRITHVDQFLEAG 184
Query: 1026 TYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFASQA 847
YLRVHVHPKRFPRCY+IDWKSRII VTES+VVLDKPAGTSVGGTTDNIEESCATFA++A
Sbjct: 185 MYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGGTTDNIEESCATFATRA 244
Query: 846 LGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQVKKLYXXXXXXXXXVGIIT 667
LGL+ PL+TTHQIDNCTEGCVVLART++ CS+FH KIREK VKKLY +G++
Sbjct: 245 LGLTAPLRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKKLYIALAASPVPIGVVN 304
Query: 666 HYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPSNATAKSYCLEDCGWSSK 487
HYMRP+N+APR+VS E+FI WHLCQL+V+ECK VPWP + YC++DCGW SK
Sbjct: 305 HYMRPINMAPRLVS-----EEFIKGWHLCQLEVMECKRVPWPDAVMEEKYCVQDCGWPSK 359
Query: 486 HVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEKMNPSINPFGRFNNQYMS 307
AYECKINLLTGRTHQ+RAQLAA GAP+VGDSMYMPA +AE ++P NPFG++ QY S
Sbjct: 360 DHAYECKINLLTGRTHQIRAQLAALGAPLVGDSMYMPAAVAEMVSPGCNPFGKYKKQYTS 419
Query: 306 DDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGAPWWR 166
+DD++ A+EEW+ CHGKEPN+AIGLQACQISWDDG+ Y AG+PWWR
Sbjct: 420 EDDKAIAVEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPWWR 466
>emb|CDP04372.1| unnamed protein product [Coffea canephora]
Length = 486
Score = 642 bits (1657), Expect = 0.0
Identities = 318/491 (64%), Positives = 378/491 (76%), Gaps = 21/491 (4%)
Frame = -1
Query: 1575 MAAASTLFTFLSNCFVSSLLTPNP--RNLAAPISLVRTLASTHAFKKRLRXXXXXXXXXX 1402
MAA +TL + L+N +SSL+ + R L +P+ LV LAS H + + +
Sbjct: 1 MAATATLASILTNTSLSSLVWSSTYRRTLLSPVRLVCRLASNHFWTENYQKNSNFITWDS 60
Query: 1401 XXXV------C-SSSNSEVAFTNTNHSSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNV 1243
C S+++S V T + SSNG+ Y RLLPCP ENGPPRVEHLVV EGG V
Sbjct: 61 RARSRYRSFSCQSTASSNVDSTPDSVSSNGFRRYGRLLPCPSENGPPRVEHLVVKEGGPV 120
Query: 1242 LDYIY------------LIHFGAVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASI 1099
LDYI LIHFGAVYYALVCP+PPP ATPEQI+ YK VTAPSVL+ RASI
Sbjct: 121 LDYISNSLDLPPLFVADLIHFGAVYYALVCPKPPPSATPEQIKTYKEVTAPSVLKNRASI 180
Query: 1098 KGKTVREAQKTFRITHVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDK 919
KGKTVREAQKT+RIT +EFVEAGTYLRVHVHPKRFPRCYEIDW+SRI+A+TESYV+LDK
Sbjct: 181 KGKTVREAQKTYRITRADEFVEAGTYLRVHVHPKRFPRCYEIDWRSRIVAITESYVILDK 240
Query: 918 PAGTSVGGTTDNIEESCATFASQALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRK 739
PAGTSVGGTTDNIEESCATFA++ALGL++PL TTHQIDNCTEGCVVLARTKDYCS+FH K
Sbjct: 241 PAGTSVGGTTDNIEESCATFATRALGLTSPLMTTHQIDNCTEGCVVLARTKDYCSVFHGK 300
Query: 738 IREKQVKKLYXXXXXXXXXVGIITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLEC 559
IREK+VKKLY VG+ITHYMRP+NIAPR+VS E+ + WHLCQL+VLEC
Sbjct: 301 IREKKVKKLYLALAAAPVPVGVITHYMRPINIAPRLVS-----EESVDGWHLCQLEVLEC 355
Query: 558 KEVPWPSNATAKSYCLEDCGWSSKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYM 379
K+V WP++ T + Y +EDCGW + AYECK+NLLTGRTHQ+RAQLAACGAP+VGDSMY+
Sbjct: 356 KKVAWPTSMTERRYSIEDCGWPPQDFAYECKVNLLTGRTHQIRAQLAACGAPIVGDSMYL 415
Query: 378 PAVIAEKMNPSINPFGRFNNQYMSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGE 199
PA +AE +NP +NPF + + +Y ++ D+++AIEEWIA HGKEP +AIGLQACQI WD+GE
Sbjct: 416 PAAVAEIVNPRLNPFRKNSKKYANETDKAQAIEEWIAQHGKEPAVAIGLQACQILWDNGE 475
Query: 198 CFYEAGAPWWR 166
FYEAG PWWR
Sbjct: 476 HFYEAGTPWWR 486
>gb|KHG01920.1| hypothetical protein F383_22898 [Gossypium arboreum]
Length = 475
Score = 642 bits (1655), Expect = 0.0
Identities = 320/469 (68%), Positives = 363/469 (77%), Gaps = 16/469 (3%)
Frame = -1
Query: 1524 SLLTPNPRNLAAPISLVRTLASTHAFKKRLRXXXXXXXXXXXXXV----CSSSNSEVAFT 1357
S+ + R+L AP+S RTLAS+ +K R C SS +VA T
Sbjct: 10 SIFSNGYRSLGAPVSSWRTLASSSLYKHYKRNSKGAVLSCLSSSKIELACLSSEVDVAQT 69
Query: 1356 NTNHSSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY------------LIHFG 1213
T+ S NGY +Y+RLLPCP ENGPPRVEHLVVSEGG VL+YI LIHFG
Sbjct: 70 TTS-SVNGYHKYDRLLPCPSENGPPRVEHLVVSEGGPVLEYICKSLDLPPLFVADLIHFG 128
Query: 1212 AVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVREAQKTFRITHVNEFVE 1033
AVYYALVCP+PPP ATPEQIR++K VTAPSVL KR SIKGKTVREAQKTFRITH +FVE
Sbjct: 129 AVYYALVCPQPPPSATPEQIRIFKEVTAPSVLSKRTSIKGKTVREAQKTFRITHFEQFVE 188
Query: 1032 AGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFAS 853
AGTYLRVHVHPKRFPRCYEIDWKSRIIAV +SYVVLDKPAGTSVGGT+DNIEESCATFAS
Sbjct: 189 AGTYLRVHVHPKRFPRCYEIDWKSRIIAVADSYVVLDKPAGTSVGGTSDNIEESCATFAS 248
Query: 852 QALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQVKKLYXXXXXXXXXVGI 673
+ALG STPLKTTHQIDNCTEGCVVLARTK+YCSIFH KIREK+VKKLY +GI
Sbjct: 249 RALGFSTPLKTTHQIDNCTEGCVVLARTKEYCSIFHGKIREKKVKKLYLALTAAPVPIGI 308
Query: 672 ITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPSNATAKSYCLEDCGWS 493
ITHYMRP+N+APR++S EDFI W+LC+L+V+ECKEVPWP + YC+ED W
Sbjct: 309 ITHYMRPINVAPRLIS-----EDFIKGWYLCKLEVMECKEVPWPDPVIQQKYCIEDFEWP 363
Query: 492 SKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEKMNPSINPFGRFNNQY 313
SK AYECKINLLTGRTHQVRAQLAACGAP+VGDSMYMPA IAE NP +NPFG++ +Y
Sbjct: 364 SKDRAYECKINLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAEMANPGLNPFGKY-KKY 422
Query: 312 MSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGAPWWR 166
++ D+ A+ +W A GKEP +AIGLQACQISWDDGE FYEA +PWWR
Sbjct: 423 TTESDKEMAVTKWFARFGKEPKVAIGLQACQISWDDGEHFYEARSPWWR 471
>gb|KDO75505.1| hypothetical protein CISIN_1g011530mg [Citrus sinensis]
Length = 483
Score = 640 bits (1651), Expect = 0.0
Identities = 323/484 (66%), Positives = 370/484 (76%), Gaps = 24/484 (4%)
Frame = -1
Query: 1545 LSNCFVSSLLTPNPRNLAAPISLVRTLASTHAFKKR---LRXXXXXXXXXXXXXVCSSSN 1375
+S+ SS+ T N R+L AP+SL+RTLASTHA R VC S
Sbjct: 1 MSSVSFSSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWK 60
Query: 1374 SEVAFTNTNH---------SSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY-- 1228
V FT+T+ SS GYPEY+RLLPCP +N PPRVEHLVVSEGG VL+YI
Sbjct: 61 RHV-FTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRE 119
Query: 1227 ----------LIHFGAVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVRE 1078
LIHFGAVYYALVCP+PP ATPEQ+RV+K VT PSVL KR+SIKGKTVRE
Sbjct: 120 LNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVRE 179
Query: 1077 AQKTFRITHVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVG 898
AQKTFRITHV++ VEAGTYLRVHVHPKRFPRCY+IDW SRIIAVTES+VVLDKPAGTSVG
Sbjct: 180 AQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVG 239
Query: 897 GTTDNIEESCATFASQALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQVK 718
GTTDNIEESCATFAS+ALGL+TPL+TTHQIDNCTEGCVVLART++YCSIFHRKIREK+VK
Sbjct: 240 GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVK 299
Query: 717 KLYXXXXXXXXXVGIITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPS 538
KLY VGI+THYMRP+NIAPR+VS W+LCQL+V+ECK+VPWP
Sbjct: 300 KLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG---------WYLCQLEVMECKKVPWPD 350
Query: 537 NATAKSYCLEDCGWSSKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEK 358
K+Y +EDCGW S+ AYECKI LLTGRTHQVRAQLAACGAP+VGDSMYMPA IA+
Sbjct: 351 ATVGKAYSIEDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQL 410
Query: 357 MNPSINPFGRFNNQYMSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGA 178
+P +NPFG+ +Y SDDD+ A+ EWI+ HG EP++AIGLQAC ISWDDGEC YEA +
Sbjct: 411 SSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARS 470
Query: 177 PWWR 166
PWWR
Sbjct: 471 PWWR 474
>ref|XP_011086178.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Sesamum
indicum]
Length = 484
Score = 639 bits (1648), Expect = e-180
Identities = 312/485 (64%), Positives = 374/485 (77%), Gaps = 15/485 (3%)
Frame = -1
Query: 1575 MAAASTLFTFLSNCFVSSLLTPNP--RNLAAPISLVRTLASTHAFKKRLRXXXXXXXXXX 1402
+ A + L + L+ VSSLL+ + RN I+L RTLA+T+ K +
Sbjct: 5 IGATTALSSTLAGSVVSSLLSASSFRRNFFTHINLARTLAATNCRFKNIHKHHTLIAGKR 64
Query: 1401 XXXVCSSSNSEVAFTNTNH-SSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY- 1228
S+++++++ ++ H S+N YP Y RLLPCP +NGPPRVEHLVVS+GG VL+YI
Sbjct: 65 NLSCESTASADISTNSSIHISNNSYPPYGRLLPCPSQNGPPRVEHLVVSKGGPVLEYISS 124
Query: 1227 -----------LIHFGAVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVR 1081
LIHFGAV+YALVCP+PPP ATPEQI+ +K T PSVL+KRASIKGKTVR
Sbjct: 125 ALNLPPLFVADLIHFGAVFYALVCPDPPPSATPEQIKTFKEFTDPSVLRKRASIKGKTVR 184
Query: 1080 EAQKTFRITHVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSV 901
EAQKTFRIT +EFVEAGTYLRVHVHPKRFPRCYEIDW+SRI+AVT+ YV+LDKPAGTSV
Sbjct: 185 EAQKTFRITRPDEFVEAGTYLRVHVHPKRFPRCYEIDWRSRIVAVTDDYVILDKPAGTSV 244
Query: 900 GGTTDNIEESCATFASQALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQV 721
GGTTDNIEESCATFA++ALGL PL+TTHQIDNCTEGCVVLARTK+YCS+FH KIREK+V
Sbjct: 245 GGTTDNIEESCATFATRALGLDAPLRTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKV 304
Query: 720 KKLYXXXXXXXXXVGIITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWP 541
KKLY +G+ITHYMRPVNIAPR++SG +FI WHLCQL+VLEC++VPWP
Sbjct: 305 KKLYLALAAAPVSLGVITHYMRPVNIAPRLISG-----EFINGWHLCQLEVLECRKVPWP 359
Query: 540 SNATAKSYCLEDCGWSSKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAE 361
+ + +EDCGW SK AYEC+INLLTGRTHQ+RAQLAACGAP+VGDSMYMPA +AE
Sbjct: 360 NRIIEEKNSIEDCGWPSKDFAYECEINLLTGRTHQIRAQLAACGAPLVGDSMYMPAAVAE 419
Query: 360 KMNPSINPFGRFNNQYMSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAG 181
+P +NPFG+ +Y SDD + A+EEWIA HGKEP++AIGLQACQISWDDGE YEAG
Sbjct: 420 ANSPGLNPFGKNKKEYSSDDVKVLAVEEWIAHHGKEPSVAIGLQACQISWDDGEHTYEAG 479
Query: 180 APWWR 166
PWWR
Sbjct: 480 CPWWR 484
>gb|KHG01919.1| hypothetical protein F383_22898 [Gossypium arboreum]
Length = 520
Score = 635 bits (1639), Expect = e-179
Identities = 318/467 (68%), Positives = 361/467 (77%), Gaps = 16/467 (3%)
Frame = -1
Query: 1524 SLLTPNPRNLAAPISLVRTLASTHAFKKRLRXXXXXXXXXXXXXV----CSSSNSEVAFT 1357
S+ + R+L AP+S RTLAS+ +K R C SS +VA T
Sbjct: 10 SIFSNGYRSLGAPVSSWRTLASSSLYKHYKRNSKGAVLSCLSSSKIELACLSSEVDVAQT 69
Query: 1356 NTNHSSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY------------LIHFG 1213
T+ S NGY +Y+RLLPCP ENGPPRVEHLVVSEGG VL+YI LIHFG
Sbjct: 70 TTS-SVNGYHKYDRLLPCPSENGPPRVEHLVVSEGGPVLEYICKSLDLPPLFVADLIHFG 128
Query: 1212 AVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVREAQKTFRITHVNEFVE 1033
AVYYALVCP+PPP ATPEQIR++K VTAPSVL KR SIKGKTVREAQKTFRITH +FVE
Sbjct: 129 AVYYALVCPQPPPSATPEQIRIFKEVTAPSVLSKRTSIKGKTVREAQKTFRITHFEQFVE 188
Query: 1032 AGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFAS 853
AGTYLRVHVHPKRFPRCYEIDWKSRIIAV +SYVVLDKPAGTSVGGT+DNIEESCATFAS
Sbjct: 189 AGTYLRVHVHPKRFPRCYEIDWKSRIIAVADSYVVLDKPAGTSVGGTSDNIEESCATFAS 248
Query: 852 QALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQVKKLYXXXXXXXXXVGI 673
+ALG STPLKTTHQIDNCTEGCVVLARTK+YCSIFH KIREK+VKKLY +GI
Sbjct: 249 RALGFSTPLKTTHQIDNCTEGCVVLARTKEYCSIFHGKIREKKVKKLYLALTAAPVPIGI 308
Query: 672 ITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPSNATAKSYCLEDCGWS 493
ITHYMRP+N+APR++S EDFI W+LC+L+V+ECKEVPWP + YC+ED W
Sbjct: 309 ITHYMRPINVAPRLIS-----EDFIKGWYLCKLEVMECKEVPWPDPVIQQKYCIEDFEWP 363
Query: 492 SKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEKMNPSINPFGRFNNQY 313
SK AYECKINLLTGRTHQVRAQLAACGAP+VGDSMYMPA IAE NP +NPFG++ +Y
Sbjct: 364 SKDRAYECKINLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAEMANPGLNPFGKY-KKY 422
Query: 312 MSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGAPW 172
++ D+ A+ +W A GKEP +AIGLQACQISWDDGE FYEA +PW
Sbjct: 423 TTESDKEMAVTKWFARFGKEPKVAIGLQACQISWDDGEHFYEARSPW 469
>ref|XP_012444881.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X1
[Gossypium raimondii] gi|823224229|ref|XP_012444882.1|
PREDICTED: RNA pseudouridine synthase 6, chloroplastic
isoform X1 [Gossypium raimondii]
gi|823224231|ref|XP_012444883.1| PREDICTED: RNA
pseudouridine synthase 6, chloroplastic isoform X1
[Gossypium raimondii]
Length = 488
Score = 635 bits (1638), Expect = e-179
Identities = 321/480 (66%), Positives = 364/480 (75%), Gaps = 27/480 (5%)
Frame = -1
Query: 1524 SLLTPNPRNLAAPISLVRTLASTHAFKKRLRXXXXXXXXXXXXXV----CSSSNSEVAFT 1357
S+ + R+L+AP+S RTLAS+ +K R C SS +VA T
Sbjct: 12 SIFSNGYRSLSAPVSSWRTLASSSLYKHYKRNSKSAVFSCLSSSKIELSCLSSKVDVAQT 71
Query: 1356 NTNHSSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY------------LIHFG 1213
T S NGY +Y+RLLPCP ENGPPRVEHLVVSEGG VL+YI LIHFG
Sbjct: 72 TTT-SVNGYHKYDRLLPCPSENGPPRVEHLVVSEGGPVLEYICKSLDLPPLFVADLIHFG 130
Query: 1212 AVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVREAQKTFRITHVNEFVE 1033
AVYYALVCP+PPP ATPEQIR++K VTAPSVL KR SIKGKTVREAQKTFRITHV +FVE
Sbjct: 131 AVYYALVCPQPPPSATPEQIRIFKEVTAPSVLSKRTSIKGKTVREAQKTFRITHVEQFVE 190
Query: 1032 AGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFAS 853
AGTYLRVHVHPKRFPRCYEIDWKSRIIAVT+SYVVLDKPAGTSVGGT+DNIEESCATFAS
Sbjct: 191 AGTYLRVHVHPKRFPRCYEIDWKSRIIAVTDSYVVLDKPAGTSVGGTSDNIEESCATFAS 250
Query: 852 QALGLSTPLKTTHQIDNCTEG-----------CVVLARTKDYCSIFHRKIREKQVKKLYX 706
+ALG STPLKTTHQIDNCTEG CVVLARTK+YCSIFH KIREK+VKKLY
Sbjct: 251 RALGFSTPLKTTHQIDNCTEGWYCILSMLHCLCVVLARTKEYCSIFHGKIREKKVKKLYL 310
Query: 705 XXXXXXXXVGIITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPSNATA 526
+GIITHYMRP+N+APR+VS EDFI W+LC+L+V+ECKEVPWP
Sbjct: 311 ALTAAPVPIGIITHYMRPINVAPRLVS-----EDFIKGWYLCKLEVMECKEVPWPDPVIQ 365
Query: 525 KSYCLEDCGWSSKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEKMNPS 346
+ YC+ED W SK AYECKINLLTGRTHQVRAQLAACGAP+VGDSMYMPA IAE NP
Sbjct: 366 QKYCIEDSEWPSKDRAYECKINLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAEMANPG 425
Query: 345 INPFGRFNNQYMSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGAPWWR 166
+NPFG++ +Y ++ D+ + +W A GKEP +AIGLQAC+ISWDDGE FYEA +PWWR
Sbjct: 426 LNPFGKY-KKYTTESDKEMTVTKWFARFGKEPKVAIGLQACEISWDDGEHFYEARSPWWR 484
>ref|XP_007026021.1| Pseudouridine synthase family protein [Theobroma cacao]
gi|508781387|gb|EOY28643.1| Pseudouridine synthase family
protein [Theobroma cacao]
Length = 491
Score = 635 bits (1637), Expect = e-179
Identities = 319/493 (64%), Positives = 372/493 (75%), Gaps = 33/493 (6%)
Frame = -1
Query: 1545 LSNCFVSSLLTPNPRNLAAPISLVRTLASTHAFKKRLRXXXXXXXXXXXXXV-------C 1387
+ + ++S+ R+L AP+SL+RTLAST A +L C
Sbjct: 1 MGSASLASIFGIGYRSLGAPMSLLRTLASTGASLYKLNKNYSKTVLSWSCLGSSRRELSC 60
Query: 1386 SSSNSEVAFTNTNHSSNG--------------YPEYNRLLPCPLENGPPRVEHLVVSEGG 1249
S+ + A T + S NG YPEY+RLLPCP NGPPRVEHLVVSEGG
Sbjct: 61 LSTKMDAAQTASATSVNGVLLYFMIEIHFLFSYPEYHRLLPCPSHNGPPRVEHLVVSEGG 120
Query: 1248 NVLDYIY------------LIHFGAVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRA 1105
VL+YI LIHFGAVYYALVCP+PPP ATPEQIR++K VTAPSVL KR
Sbjct: 121 PVLEYICKALDLPPMFVADLIHFGAVYYALVCPQPPPSATPEQIRIFKEVTAPSVLSKRT 180
Query: 1104 SIKGKTVREAQKTFRITHVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVL 925
SI+GKTVREAQKTFRITHV++FVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVT+SYVVL
Sbjct: 181 SIRGKTVREAQKTFRITHVDQFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTDSYVVL 240
Query: 924 DKPAGTSVGGTTDNIEESCATFASQALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFH 745
DKPAGTSVGGTTDNIEESCATFA++ALG STPLKTTHQIDNCTEGCVVLARTK+YCS+FH
Sbjct: 241 DKPAGTSVGGTTDNIEESCATFANRALGFSTPLKTTHQIDNCTEGCVVLARTKEYCSVFH 300
Query: 744 RKIREKQVKKLYXXXXXXXXXVGIITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVL 565
KIREK+VKKLY +G+ITHYMRP+N+APR+VS EDFI W+LCQL+V+
Sbjct: 301 GKIREKKVKKLYLALTAAPLPIGVITHYMRPINMAPRLVS-----EDFIKGWYLCQLEVM 355
Query: 564 ECKEVPWPSNATAKSYCLEDCGWSSKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSM 385
ECK+VPWP ++YC+ED GW K AYECKINLLTGRTHQVRAQLAACGAP++GDSM
Sbjct: 356 ECKKVPWPDYVIQENYCIEDSGWPLKDHAYECKINLLTGRTHQVRAQLAACGAPILGDSM 415
Query: 384 YMPAVIAEKMNPSINPFGRFNNQYMSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDD 205
YMP IAE NP +NPFG++ ++ S++D+ AI EWI+ GKEP++AIGLQACQISWDD
Sbjct: 416 YMPPTIAEIANPGLNPFGKY-KKHTSENDKEIAITEWISQFGKEPSVAIGLQACQISWDD 474
Query: 204 GECFYEAGAPWWR 166
GE FY+A +PWWR
Sbjct: 475 GEHFYKARSPWWR 487
>ref|XP_008800212.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Phoenix
dactylifera]
Length = 483
Score = 634 bits (1636), Expect = e-179
Identities = 326/489 (66%), Positives = 363/489 (74%), Gaps = 15/489 (3%)
Frame = -1
Query: 1575 MAAASTLFTFLSNCFVSSLLTPNPRNLAAPISLVRTLAST-HAFKKRLRXXXXXXXXXXX 1399
M A+ L + +SN VS L + R L AP +L R L++ H R
Sbjct: 1 MPTAAALVS-MSNALVSPLWASSRRALMAPAALARALSTAPHPRGNRRHKKEICWVATKK 59
Query: 1398 XXVCSSSNSEVAFTNTNHSS--NGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY- 1228
SS +E + S+ NGYPEY RLLPCP +N PPRVEHLVVSE G VLDYI
Sbjct: 60 APPPRSSKAEAIAVESTASALANGYPEYKRLLPCPSQNQPPRVEHLVVSEDGVVLDYISK 119
Query: 1227 -----------LIHFGAVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVR 1081
LIHFGAV+YALVCP+PPP ATP+Q+RV+K VT PSVLQKR+SIKGKTVR
Sbjct: 120 ALHLPPLFVADLIHFGAVHYALVCPKPPPSATPDQVRVFKEVTEPSVLQKRSSIKGKTVR 179
Query: 1080 EAQKTFRITHVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSV 901
EAQKTFR+T VN+ VEAGTYLRVHVHPKRFPRCYEIDWKSRII VT+SYVVLDKPA TSV
Sbjct: 180 EAQKTFRVTDVNQIVEAGTYLRVHVHPKRFPRCYEIDWKSRIITVTDSYVVLDKPAATSV 239
Query: 900 GGTTDNIEESCATFASQALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQV 721
GGTTDN EE CATFAS+ALGL TPLKTTHQIDNCTEGCVVLARTKD+CSIFH IREKQV
Sbjct: 240 GGTTDNTEECCATFASRALGLETPLKTTHQIDNCTEGCVVLARTKDFCSIFHGMIREKQV 299
Query: 720 KKLYXXXXXXXXXVGIITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWP 541
KK Y VGII+HYMRPVN+APR+VS E+ IG WHLCQL+VLECKEVPWP
Sbjct: 300 KKFYLALAAAPVPVGIISHYMRPVNVAPRLVS-----EESIGGWHLCQLEVLECKEVPWP 354
Query: 540 SNATAKSYCLEDCGWSSKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAE 361
+ KSY +EDCGW SK +AYECKINLLTG+THQVRAQLAA GAP+VGDSMYMPA AE
Sbjct: 355 NVDVEKSYGIEDCGWPSKDIAYECKINLLTGKTHQVRAQLAAIGAPIVGDSMYMPAAAAE 414
Query: 360 KMNPSINPFGRFNNQYMSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAG 181
N INPFGR Q+ S+DDR AIEEWIA HGKEP+ AIGLQA ISWD G+C YEAG
Sbjct: 415 MCNTQINPFGRNRKQFTSEDDRILAIEEWIAQHGKEPSAAIGLQASHISWDGGKCSYEAG 474
Query: 180 APWWR*DTA 154
APWWR T+
Sbjct: 475 APWWRCTTS 483
>ref|XP_004293270.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Fragaria
vesca subsp. vesca] gi|764549508|ref|XP_011459966.1|
PREDICTED: RNA pseudouridine synthase 6, chloroplastic
[Fragaria vesca subsp. vesca]
gi|764549517|ref|XP_011459967.1| PREDICTED: RNA
pseudouridine synthase 6, chloroplastic [Fragaria vesca
subsp. vesca]
Length = 477
Score = 633 bits (1632), Expect = e-178
Identities = 315/483 (65%), Positives = 359/483 (74%), Gaps = 28/483 (5%)
Frame = -1
Query: 1530 VSSLLTPNPRNLAAPISLVRTLASTHA----------------FKKRLRXXXXXXXXXXX 1399
++SLL R+ AP+ LVRTLA TH F K+L+
Sbjct: 6 LASLLGSGCRSFIAPVGLVRTLALTHVGLSEQLRSYQHVKVAWFSKKLKKKNKRVA---- 61
Query: 1398 XXVCSSSNSEVAFTNTNHSSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY--- 1228
C S EV + S GYP Y RLLPCP +NGPPRVEHLVVSEGG VL+YI
Sbjct: 62 ---CESLKEEVTYPTAASSVYGYP-YTRLLPCPSQNGPPRVEHLVVSEGGPVLEYICKKL 117
Query: 1227 ---------LIHFGAVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVREA 1075
LIHFGAVYYALVCP+PPP ATPEQ+RVYK VTAPSVL+KR SIKGKTVREA
Sbjct: 118 DLPAQFVADLIHFGAVYYALVCPKPPPTATPEQMRVYKEVTAPSVLKKRDSIKGKTVREA 177
Query: 1074 QKTFRITHVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGG 895
QKTFRITH +++VE GTYLRVHVHPKRFPRCY+IDWKSR+IAVTE +VVLDKPAGT+VGG
Sbjct: 178 QKTFRITHADQYVEDGTYLRVHVHPKRFPRCYDIDWKSRVIAVTEDFVVLDKPAGTTVGG 237
Query: 894 TTDNIEESCATFASQALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQVKK 715
TTDNIEESCATF S+ALGLSTPL TTHQIDNCTEGCVVLARTKDYCS+FH KIREK+VKK
Sbjct: 238 TTDNIEESCATFTSRALGLSTPLMTTHQIDNCTEGCVVLARTKDYCSVFHGKIREKKVKK 297
Query: 714 LYXXXXXXXXXVGIITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPSN 535
LY +G ITHYMRP+N+APR++S ED I RW LCQL+V+ECK+VPWPS+
Sbjct: 298 LYLALAAAPVPLGTITHYMRPINVAPRLIS-----EDSIERWSLCQLEVMECKKVPWPSS 352
Query: 534 ATAKSYCLEDCGWSSKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEKM 355
+ Y +EDCGW SK AYECKINLLTG+THQ+RAQLAACG P+VGDSMYMPA IAE
Sbjct: 353 VIEEEYGVEDCGWPSKDYAYECKINLLTGKTHQIRAQLAACGTPLVGDSMYMPAAIAEME 412
Query: 354 NPSINPFGRFNNQYMSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGAP 175
NP +NPFG+ Y ++D A+ EW+A HGKEP +AIGLQACQISWDDGE +EA AP
Sbjct: 413 NPELNPFGKHKKHYAGENDEEIAVTEWMARHGKEPIVAIGLQACQISWDDGEHSFEARAP 472
Query: 174 WWR 166
WWR
Sbjct: 473 WWR 475
>ref|XP_009357422.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
X1 [Pyrus x bretschneideri]
Length = 476
Score = 629 bits (1622), Expect = e-177
Identities = 308/473 (65%), Positives = 356/473 (75%), Gaps = 19/473 (4%)
Frame = -1
Query: 1527 SSLLTPNPRNLAAPISLVRTLASTHAFK-------KRLRXXXXXXXXXXXXXVCSSSNSE 1369
SS+L R+ +AP++LVRTLA TH + ++ S +
Sbjct: 7 SSMLANGCRSFSAPVALVRTLALTHVALSEHSNSYRHVKVAWFSRSSNKRKSARQSLKQD 66
Query: 1368 VAFTNTNHSSNGYPEYNRLLPCPLENGPPRVEHLVVSEGGNVLDYIY------------L 1225
V+ S+NGYPEY RLLPCP +NGPPR+EHLVVSEGG VL+YI L
Sbjct: 67 VSQPTAVSSANGYPEYTRLLPCPSDNGPPRIEHLVVSEGGPVLEYICKVLDLPLQFVADL 126
Query: 1224 IHFGAVYYALVCPEPPPRATPEQIRVYKAVTAPSVLQKRASIKGKTVREAQKTFRITHVN 1045
IH GAVYYALVCP PPP AT EQ+RV+K VTAPSVL+ R SIKGKTVREAQKTFRITH +
Sbjct: 127 IHLGAVYYALVCPRPPPTATQEQMRVFKEVTAPSVLKDRTSIKGKTVREAQKTFRITHPD 186
Query: 1044 EFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCA 865
+FVE GTYLRVHVHPKRFPRCYEIDWKSRI+AVT+ +VVLDKPAGT+VGGTTDNIEESCA
Sbjct: 187 QFVETGTYLRVHVHPKRFPRCYEIDWKSRIVAVTDEFVVLDKPAGTTVGGTTDNIEESCA 246
Query: 864 TFASQALGLSTPLKTTHQIDNCTEGCVVLARTKDYCSIFHRKIREKQVKKLYXXXXXXXX 685
TFA++ALGL+T L TTHQIDNCTEGCVVLARTK+YCS+FH KIREK+VKK Y
Sbjct: 247 TFATRALGLTTSLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKHYLALAAAPV 306
Query: 684 XVGIITHYMRPVNIAPRIVSGDVMFEDFIGRWHLCQLKVLECKEVPWPSNATAKSYCLED 505
+G ITHYMRP+N+APR+ S EDF+ RW LCQL+V+ECKEVPWPS+ + YC+ED
Sbjct: 307 PIGTITHYMRPINMAPRLTS-----EDFMERWSLCQLEVMECKEVPWPSSVVEQKYCIED 361
Query: 504 CGWSSKHVAYECKINLLTGRTHQVRAQLAACGAPVVGDSMYMPAVIAEKMNPSINPFGRF 325
CGW SK AYECKINLLTGRTHQVRAQLAA GAP+VGDSMYMPA +AE +P NPFG++
Sbjct: 362 CGWPSKEYAYECKINLLTGRTHQVRAQLAALGAPIVGDSMYMPAAVAEMASPGRNPFGKY 421
Query: 324 NNQYMSDDDRSRAIEEWIACHGKEPNIAIGLQACQISWDDGECFYEAGAPWWR 166
Y D+ AIEEW A HGKEP +AIGLQACQISWDDG+ +EAGAPWWR
Sbjct: 422 KKHYTHVTDKEVAIEEWSAQHGKEPGVAIGLQACQISWDDGKYTFEAGAPWWR 474