BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00005178
         (2205 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010244378.1| PREDICTED: RNA polymerase sigma factor sigC ...   563   e-157
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC ...   542   e-151
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   534   e-148
ref|XP_012077339.1| PREDICTED: RNA polymerase sigma factor sigC ...   517   e-143
gb|KDP34138.1| hypothetical protein JCGZ_07709 [Jatropha curcas]      510   e-141
ref|XP_010909938.1| PREDICTED: RNA polymerase sigma factor sigC ...   502   e-139
ref|XP_008799751.1| PREDICTED: RNA polymerase sigma factor sigC ...   499   e-138
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   499   e-138
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The...   497   e-137
ref|XP_006853783.2| PREDICTED: RNA polymerase sigma factor sigC ...   493   e-136
gb|ERN15250.1| hypothetical protein AMTR_s00056p00209700 [Ambore...   493   e-136
gb|KDO79960.1| hypothetical protein CISIN_1g009449mg [Citrus sin...   493   e-136
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   491   e-136
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   488   e-134
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun...   486   e-134
ref|XP_010047303.1| PREDICTED: RNA polymerase sigma factor sigC ...   485   e-134
ref|XP_008220144.1| PREDICTED: RNA polymerase sigma factor sigC-...   483   e-133
gb|AKC88690.1| sigma factor [Melianthus villosus]                     480   e-132
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC ...   479   e-132
gb|AKC88685.1| sigma factor [Francoa sonchifolia]                     476   e-131

>ref|XP_010244378.1| PREDICTED: RNA polymerase sigma factor sigC [Nelumbo nucifera]
            gi|720088207|ref|XP_010244379.1| PREDICTED: RNA
            polymerase sigma factor sigC [Nelumbo nucifera]
          Length = 558

 Score =  563 bits (1452), Expect = e-157
 Identities = 301/563 (53%), Positives = 391/563 (69%), Gaps = 6/563 (1%)
 Frame = -3

Query: 2032 IGFLLDWKWVFPIQSNFXXXXXXXXXXXXXXXXXXRGKEASLESAKMSTLSLIPEESETR 1853
            +GF LDWKWVFP+QS+                     +EA  ESA+MS LS+IPEESET 
Sbjct: 1    MGFGLDWKWVFPVQSHLLSHSSTRNHSSFVR-----SREAYFESARMSFLSVIPEESETL 55

Query: 1852 YKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSHNAFCDLNMPVLEDNSVHL 1673
             KD LK Y C  G LQ + + YAA  G+KMN   KE     ++ F D+++   ED+S  L
Sbjct: 56   QKDPLKAYACSSGTLQPVNNGYAAI-GVKMNTS-KEFHNSLYDTFEDISIATPEDSSAFL 113

Query: 1672 VSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKLFHACLSRTLKA 1493
             S  +   + F+LLMEN+++IE+ +  SD + LE+ IL+Q+ +LGAL LFHACLSRT+K 
Sbjct: 114  ASLQARKISCFSLLMENVEKIEDIFVSSDLIRLEKGILVQLEKLGALNLFHACLSRTVKV 173

Query: 1492 PDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMRERVAEKVAKISDFPLH 1313
              A+ +   L + SK   +   M   +D+ITV S +K  RK  RER +++ +K       
Sbjct: 174  SSALNLHSALKECSKKYLMDGEMSDHVDHITVPSRRKEERKLRRERESKRASKKPALKSS 233

Query: 1312 SK-SVNLVQQLTKS-----SNPKRRRFAVARNEMEMAKGLKELTNLERIRSTLEERTGRG 1151
             K  +   QQ T S     ++ K RR  +ARNE EM++ +KE++ LERIRS LEE  GR 
Sbjct: 234  PKCGIGGPQQSTISIAKRPASAKSRRLMIARNESEMSRAVKEVSCLERIRSNLEEELGRV 293

Query: 1150 ASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRRGISLEDLLQAG 971
             S +SWA A G+ EK LQQRLHFGW+CRD LL+S  SLV+Y+ARNYR  GI+ EDLLQAG
Sbjct: 294  ISFSSWAEAVGLDEKELQQRLHFGWYCRDKLLRSTRSLVVYLARNYRGLGIAFEDLLQAG 353

Query: 970  NMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLNDIIEQTKKARR 791
            N GVLQGAERFDHTRGYRFSTYVQYWIRKSMS+L+AQHS+G+ IP+TL+  I Q  K R+
Sbjct: 354  NFGVLQGAERFDHTRGYRFSTYVQYWIRKSMSTLVAQHSRGVHIPLTLSRAINQIHKTRK 413

Query: 790  SLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHVKFKEFTPDTTL 611
            S + ++G +P D+EI+K  G+SVA +RLA KC R +GSIDQK+GD + VKF EF PDT++
Sbjct: 414  SFFNTHGRYPDDDEISKCTGLSVAKVRLAGKCLRVVGSIDQKMGDSLTVKFMEFMPDTSI 473

Query: 610  KTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIGKLFHVSKEWIR 431
            KTPE+IVM+QHM+K+I +LL+ LHPRER+VLVLR+GL DG  RSLEEIG+LF+V+KEWIR
Sbjct: 474  KTPEDIVMRQHMRKDIHKLLQGLHPRERKVLVLRYGLCDGRCRSLEEIGRLFNVTKEWIR 533

Query: 430  KIEKAALTKVRNGGSKTRLKHYV 362
            KIEKAA+TKVR    +  L  Y+
Sbjct: 534  KIEKAAMTKVRTEEVQRNLSEYL 556


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  542 bits (1397), Expect = e-151
 Identities = 285/566 (50%), Positives = 378/566 (66%), Gaps = 6/566 (1%)
 Frame = -3

Query: 2038 MGIGFLLDWKWVFPIQSNFXXXXXXXXXXXXXXXXXXRGKEASLESAKMSTLSLIPEESE 1859
            MG+GF L+ KW FPI                      +GKEAS +S + S  S+  E+ E
Sbjct: 1    MGMGFRLNLKWDFPISC-----PTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCE 55

Query: 1858 TRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSHNAFCDLNMPVLEDNSV 1679
            + YKD  K + C  GALQ+ E+ Y+A + MKM IG K +  D          P+ ED S 
Sbjct: 56   SLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIG-KCSHGDLFKIVNASQAPIGEDISA 114

Query: 1678 HLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKLFHACLSRTL 1499
             +    +  ++ F+LL+ENL  +EE +ADS+ V LER+I++Q+GRLGALKLF  CLSRTL
Sbjct: 115  SVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTL 174

Query: 1498 KAPDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMRERVAEKVAKISDFP 1319
            K   +  +    T+H ++   +  +   +D + V SGKK  RKS RER  EK   I  FP
Sbjct: 175  KTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFP 234

Query: 1318 LHSKSVNL------VQQLTKSSNPKRRRFAVARNEMEMAKGLKELTNLERIRSTLEERTG 1157
            L SK++        V  + ++ N +R+R   A+NE EM+KG+K + NLERIR+TLEE  G
Sbjct: 235  LPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIG 294

Query: 1156 RGASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRRGISLEDLLQ 977
              ASL++WA AAG+ +KVLQQ+L FGW+CRD LL+S HSLVLYIARNYR  G++ ED+LQ
Sbjct: 295  HVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQ 354

Query: 976  AGNMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLNDIIEQTKKA 797
            AGN+GVLQGAERFDHT+GYRFSTYVQYWIRKSMS+L+A+H++G+KIP TLN  I Q +KA
Sbjct: 355  AGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKA 414

Query: 796  RRSLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHVKFKEFTPDT 617
            R++LYKS+G +P D EIAK  G+S+A IR A  C R +GS DQ   DC      EFTPDT
Sbjct: 415  RKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDT 474

Query: 616  TLKTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIGKLFHVSKEW 437
            ++K+PEE  M+Q  +K+I  LL+ L PRERQ+LVLR+G  +  R+SLEEIG+ F+VSKEW
Sbjct: 475  SIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEW 534

Query: 436  IRKIEKAALTKVRNGGSKTRLKHYVE 359
            IRK+EK AL  +R+      L+HYV+
Sbjct: 535  IRKLEKTALANLRDEEICQNLRHYVD 560


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  534 bits (1375), Expect = e-148
 Identities = 275/528 (52%), Positives = 365/528 (69%), Gaps = 6/528 (1%)
 Frame = -3

Query: 1924 GKEASLESAKMSTLSLIPEESETRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKE 1745
            GKEAS +S + S  S+  E+ E+ YKD  K + C  GALQ+ E+ Y+A + MKM IG K 
Sbjct: 84   GKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIG-KC 142

Query: 1744 ACVDSHNAFCDLNMPVLEDNSVHLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLERE 1565
            +  D          P+ ED S  +    +  ++ F+LL+ENL  +EE +ADS+ V LER+
Sbjct: 143  SHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERD 202

Query: 1564 ILIQIGRLGALKLFHACLSRTLKAPDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFSGK 1385
            I++Q+GRLGALKLF  CLSRTLK   +  +    T+H ++   +  +   +D + V SGK
Sbjct: 203  IMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGK 262

Query: 1384 KSRRKSMRERVAEKVAKISDFPLHSKSVNL------VQQLTKSSNPKRRRFAVARNEMEM 1223
            K  RKS RER  EK   I  FPL SK++        V  + ++ N +R+R   A+NE EM
Sbjct: 263  KEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEM 322

Query: 1222 AKGLKELTNLERIRSTLEERTGRGASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAH 1043
            +KG+K + NLERIR+TLEE  G  ASL++WA AAG+ +KVLQQ+L FGW+CRD LL+S H
Sbjct: 323  SKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTH 382

Query: 1042 SLVLYIARNYRRRGISLEDLLQAGNMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIA 863
            SLVLYIARNYR  G++ ED+LQAGN+GVLQGAERFDHT+GYRFSTYVQYWIRKSMS+L+A
Sbjct: 383  SLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVA 442

Query: 862  QHSKGIKIPVTLNDIIEQTKKARRSLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAI 683
            +H++G+KIP TLN  I Q +KAR++LYKS+G +P D EIAK  G+S+A IR A  C R +
Sbjct: 443  RHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVV 502

Query: 682  GSIDQKIGDCMHVKFKEFTPDTTLKTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFG 503
            GS DQ   DC      EFTPDT++K+PEE  M+Q  +K+I  LL+ L PRERQ+LVLR+G
Sbjct: 503  GSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYG 562

Query: 502  LEDGSRRSLEEIGKLFHVSKEWIRKIEKAALTKVRNGGSKTRLKHYVE 359
              +  R+SLEEIG+ F+VSKEWIRK+EK AL  +R+      L+HYV+
Sbjct: 563  FGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYVD 610


>ref|XP_012077339.1| PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
          Length = 606

 Score =  517 bits (1332), Expect = e-143
 Identities = 275/579 (47%), Positives = 392/579 (67%), Gaps = 8/579 (1%)
 Frame = -3

Query: 2074 SEHGYLSWIKQAMGIGFLLDWKWVFPIQSNFXXXXXXXXXXXXXXXXXXRGKEASLESAK 1895
            S H + S +K  MG+GF L  K  FP  S F                   G+E S+  ++
Sbjct: 31   SFHSFFSSLKTKMGLGFRLSLKLGFPFHSQFHVNSPSRLSSSPSAVK---GREGSINISR 87

Query: 1894 MSTLSLIPEESETRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSHNAFC 1715
            +S LS+I EE +  ++D LK        +Q++E+ ++  +  K+++G K +    ++   
Sbjct: 88   LSFLSVISEEGDNLHRDHLKTNAYSSSGMQTLENEHSQVEEAKISVG-KRSLSGLNDTID 146

Query: 1714 DLNMPVLEDNSVHLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGA 1535
            D  + + ED+ V   SS+ D +++F+LL+ENL  +EE++ADSD + LER+IL+Q+G+LGA
Sbjct: 147  DAQVFIKEDDFVP-PSSSKDRTSNFSLLLENLNILEESFADSDVLKLERDILLQLGKLGA 205

Query: 1534 LKLFHACLSRTLKAPDAIKVAFP--LTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMR 1361
            LKLF+ CL+RTL+   A  + F    T++ ++          +  I V +GKK  RKS R
Sbjct: 206  LKLFNTCLTRTLEVQTANVLDFSDLPTENIQECKRDGTSNGNVYKIIVCTGKKEERKSRR 265

Query: 1360 ERVAEKVA-KISDFPLHSKSVNLVQQLT-----KSSNPKRRRFAVARNEMEMAKGLKELT 1199
            ER + K   K+  FPL  KS+   +        K+SN K RR  +ARNE EM++G+K L 
Sbjct: 266  ERASLKNGHKVPCFPLPLKSIQNGRGKATSFDKKTSNSKSRRLMIARNEAEMSRGVKVLA 325

Query: 1198 NLERIRSTLEERTGRGASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIAR 1019
            NLE+IR+TLE+ TGR  SL+ WA AAG+  KVLQQ+LHFGW+CRD L++S  SLVL++AR
Sbjct: 326  NLEKIRTTLEQETGRAVSLSCWAEAAGLDMKVLQQQLHFGWYCRDELVRSTRSLVLFLAR 385

Query: 1018 NYRRRGISLEDLLQAGNMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKI 839
            NYR  GI+LEDLLQAGNMGVLQGAERFD  RGYRFSTYVQYWIRKSMS ++++H++GI+I
Sbjct: 386  NYRGMGIALEDLLQAGNMGVLQGAERFDDARGYRFSTYVQYWIRKSMSKIVSRHARGIQI 445

Query: 838  PVTLNDIIEQTKKARRSLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIG 659
            P TL+  I Q +KAR++L  S+G +P DE+IA+  G+S+A I  A++C R +GSIDQK+G
Sbjct: 446  PCTLSRAINQIQKARKNLSASHGKYPDDEDIAEFTGLSLAKIESASRCLRVVGSIDQKMG 505

Query: 658  DCMHVKFKEFTPDTTLKTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRS 479
            DC + K+ EF  DTT+K+PEE VM+QHM K++ +LL  L  RERQVL+LR+GL+D   +S
Sbjct: 506  DCFNAKYLEFIHDTTIKSPEEAVMRQHMIKDMHDLLRGLDTRERQVLILRYGLKDHQPKS 565

Query: 478  LEEIGKLFHVSKEWIRKIEKAALTKVRNGGSKTRLKHYV 362
            LEEIG++FHVSKEW+R++EK  +T++RN  +   L++YV
Sbjct: 566  LEEIGRVFHVSKEWVRRLEKKVMTRLRNEETCRNLRYYV 604


>gb|KDP34138.1| hypothetical protein JCGZ_07709 [Jatropha curcas]
          Length = 564

 Score =  510 bits (1314), Expect = e-141
 Identities = 271/567 (47%), Positives = 386/567 (68%), Gaps = 8/567 (1%)
 Frame = -3

Query: 2038 MGIGFLLDWKWVFPIQSNFXXXXXXXXXXXXXXXXXXRGKEASLESAKMSTLSLIPEESE 1859
            MG+GF L  K  FP  S F                   G+E S+  +++S LS+I EE +
Sbjct: 1    MGLGFRLSLKLGFPFHSQFHVNSPSRLSSSPSAVK---GREGSINISRLSFLSVISEEGD 57

Query: 1858 TRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSHNAFCDLNMPVLEDNSV 1679
              ++D LK        +Q++E+ ++  +  K+++G K +    ++   D  + + ED+ V
Sbjct: 58   NLHRDHLKTNAYSSSGMQTLENEHSQVEEAKISVG-KRSLSGLNDTIDDAQVFIKEDDFV 116

Query: 1678 HLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKLFHACLSRTL 1499
               SS+ D +++F+LL+ENL  +EE++ADSD + LER+IL+Q+G+LGALKLF+ CL+RTL
Sbjct: 117  P-PSSSKDRTSNFSLLLENLNILEESFADSDVLKLERDILLQLGKLGALKLFNTCLTRTL 175

Query: 1498 KAPDAIKVAFP--LTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMRERVAEKVA-KIS 1328
            +   A  + F    T++ ++          +  I V +GKK  RKS RER + K   K+ 
Sbjct: 176  EVQTANVLDFSDLPTENIQECKRDGTSNGNVYKIIVCTGKKEERKSRRERASLKNGHKVP 235

Query: 1327 DFPLHSKSVNLVQQLT-----KSSNPKRRRFAVARNEMEMAKGLKELTNLERIRSTLEER 1163
             FPL  KS+   +        K+SN K RR  +ARNE EM++G+K L NLE+IR+TLE+ 
Sbjct: 236  CFPLPLKSIQNGRGKATSFDKKTSNSKSRRLMIARNEAEMSRGVKVLANLEKIRTTLEQE 295

Query: 1162 TGRGASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRRGISLEDL 983
            TGR  SL+ WA AAG+  KVLQQ+LHFGW+CRD L++S  SLVL++ARNYR  GI+LEDL
Sbjct: 296  TGRAVSLSCWAEAAGLDMKVLQQQLHFGWYCRDELVRSTRSLVLFLARNYRGMGIALEDL 355

Query: 982  LQAGNMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLNDIIEQTK 803
            LQAGNMGVLQGAERFD  RGYRFSTYVQYWIRKSMS ++++H++GI+IP TL+  I Q +
Sbjct: 356  LQAGNMGVLQGAERFDDARGYRFSTYVQYWIRKSMSKIVSRHARGIQIPCTLSRAINQIQ 415

Query: 802  KARRSLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHVKFKEFTP 623
            KAR++L  S+G +P DE+IA+  G+S+A I  A++C R +GSIDQK+GDC + K+ EF  
Sbjct: 416  KARKNLSASHGKYPDDEDIAEFTGLSLAKIESASRCLRVVGSIDQKMGDCFNAKYLEFIH 475

Query: 622  DTTLKTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIGKLFHVSK 443
            DTT+K+PEE VM+QHM K++ +LL  L  RERQVL+LR+GL+D   +SLEEIG++FHVSK
Sbjct: 476  DTTIKSPEEAVMRQHMIKDMHDLLRGLDTRERQVLILRYGLKDHQPKSLEEIGRVFHVSK 535

Query: 442  EWIRKIEKAALTKVRNGGSKTRLKHYV 362
            EW+R++EK  +T++RN  +   L++YV
Sbjct: 536  EWVRRLEKKVMTRLRNEETCRNLRYYV 562


>ref|XP_010909938.1| PREDICTED: RNA polymerase sigma factor sigC [Elaeis guineensis]
          Length = 563

 Score =  502 bits (1293), Expect = e-139
 Identities = 281/569 (49%), Positives = 370/569 (65%), Gaps = 10/569 (1%)
 Frame = -3

Query: 2038 MGIGFLLDWK-WVFPIQSNFXXXXXXXXXXXXXXXXXXRG-KEASLESAKMSTLSLIPEE 1865
            MG GF++  K W FPIQS                       +E S E  K+S+  L  E 
Sbjct: 1    MGFGFMVASKRWAFPIQSPLATNPCARLLDHHHPPPSFFRVREVSFELGKVSSQRLFTER 60

Query: 1864 SETRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSHNAFCDLNMPVLEDN 1685
             E  ++D+LK Y C   A QSIE+   +A   K+NI +K    +       +NM + ED+
Sbjct: 61   VELLHRDTLKAYVCSFEAPQSIENM--SADACKVNIDKKLLKENR-----PINM-IEEDS 112

Query: 1684 SVHLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKLFHACLSR 1505
            S +     + +S  ++LLMENL+ IE+ +A +D V L+R+IL+ I RLGALKLFHACLSR
Sbjct: 113  SSYNARLKASSSLQYSLLMENLERIEDVFAGTDLVRLQRDILVHIRRLGALKLFHACLSR 172

Query: 1504 TLKAPDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMR-----ERVAEKV 1340
            TL AP A       +KHS    +  P+  +  NI V SGKK  RK  R     ER +E  
Sbjct: 173  TLMAPTADNSNSLHSKHSGGCSLEFPLGEQKHNIIVHSGKKKERKLRRRRRALERASEMS 232

Query: 1339 AKISDFPLHSKSVNL---VQQLTKSSNPKRRRFAVARNEMEMAKGLKELTNLERIRSTLE 1169
            A       + K  +L   + +L  SS  ++RR  +ARNE EM++G+KE+ NLER R  LE
Sbjct: 233  ALSDSSKKNCKMFSLPTGLGKLNNSSESRKRRVLIARNESEMSRGVKEVANLERTRIKLE 292

Query: 1168 ERTGRGASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRRGISLE 989
            E  G+ AS   WA AAGI +K L QRL FGW+CRD L+KS  SLV+++AR YR  GI+ +
Sbjct: 293  EEIGQPASYARWAEAAGIDQKTLYQRLQFGWYCRDKLIKSTRSLVMFVARKYRGMGIAFD 352

Query: 988  DLLQAGNMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLNDIIEQ 809
            DLLQAGN+GVL GAERFD+ RGY+FSTYVQYWIRKSM ++IA+HSKGI+IPV +  +I++
Sbjct: 353  DLLQAGNVGVLNGAERFDNKRGYKFSTYVQYWIRKSMLAVIARHSKGIQIPVRMEKVIKR 412

Query: 808  TKKARRSLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHVKFKEF 629
             ++ARR L    G +PRDEE A+  G+S+  +RLANKCSR +GSI+Q IGD    K  E 
Sbjct: 413  IQEARRDLSNREGRYPRDEETAEFTGLSLDKVRLANKCSRTVGSIEQGIGDGWCTKIMEI 472

Query: 628  TPDTTLKTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIGKLFHV 449
            TPDT+LK P EIVM QHM+++I E+L+ LHPRERQVLVLR+GL+DG  +SLE+IG+LFHV
Sbjct: 473  TPDTSLKAPSEIVMGQHMREDIFEVLKPLHPRERQVLVLRYGLDDGRCKSLEDIGRLFHV 532

Query: 448  SKEWIRKIEKAALTKVRNGGSKTRLKHYV 362
            +KEWIRKIEKAA +K+R    +  LKHY+
Sbjct: 533  TKEWIRKIEKAAFSKIRREEIQRELKHYL 561


>ref|XP_008799751.1| PREDICTED: RNA polymerase sigma factor sigC [Phoenix dactylifera]
          Length = 567

 Score =  499 bits (1286), Expect = e-138
 Identities = 279/573 (48%), Positives = 367/573 (64%), Gaps = 14/573 (2%)
 Frame = -3

Query: 2038 MGIGFLLDWK-WVFPIQSNFXXXXXXXXXXXXXXXXXXRGK--EASLESAKMSTLSLIPE 1868
            MG GF++  K W FPIQS                      +  EA  E  K+S   L  E
Sbjct: 1    MGFGFMVASKRWAFPIQSPLPTNPCARLLDHQHHPPSSFFRVREAFSEPGKVSLQHLFTE 60

Query: 1867 ESETRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSHNAFCDLNMPVL-- 1694
              E  ++D+ K   C   A QSIE+  A A  + M   +++    +H    DLN P+   
Sbjct: 61   RVELLHRDTSKACVCSFEAPQSIENMSADANEVNM---DRKLLRGAH----DLNRPINMM 113

Query: 1693 -EDNSVHLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKLFHA 1517
              D+S +    T+ +S  +NLLMENL  IE+ +A +D V ++R+IL+ I RLGALKLFHA
Sbjct: 114  ENDSSAYHARLTASSSLQYNLLMENLDRIEDVFAGTDLVRMQRDILVHIRRLGALKLFHA 173

Query: 1516 CLSRTLKAPDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMRERVAEKVA 1337
            CLSRT   P A    F  ++HS    +  P+  +  NI V SGKK  RK  R R  E+ +
Sbjct: 174  CLSRTHITPTADNSNFLHSEHSGGCSLEFPLVEQKHNIIVRSGKKKERKLRRRRALERAS 233

Query: 1336 KISDFPLHSKSVNLVQ--------QLTKSSNPKRRRFAVARNEMEMAKGLKELTNLERIR 1181
            ++S   L S   N           +L  SS  ++RR  +ARNE EM++G+KE+ NLER  
Sbjct: 234  EVSAL-LGSSKKNCTTFSLPTGLGKLNNSSESRKRRVLIARNESEMSRGVKEVANLERTY 292

Query: 1180 STLEERTGRGASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRRG 1001
              LEE+ G+ AS   WA AAGI +K L QRL FGW+CRD L+KS  SLV+Y+AR YR  G
Sbjct: 293  IKLEEKIGQPASYARWAEAAGIDQKTLHQRLQFGWYCRDELIKSTRSLVIYLARKYRGMG 352

Query: 1000 ISLEDLLQAGNMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLND 821
            I+ +DLLQAGN+GVL GAERFD+ RGY+FSTYVQYWIRKSM ++IA+HSKGI+IPV +  
Sbjct: 353  IAFDDLLQAGNLGVLNGAERFDNKRGYKFSTYVQYWIRKSMLAVIARHSKGIQIPVRMEK 412

Query: 820  IIEQTKKARRSLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHVK 641
            II+Q ++ARR      G +PRDEE A+  G+S+  +RLA KCSR IGSI+Q+IGD    K
Sbjct: 413  IIKQIQEARRDFSSREGRYPRDEETAEFTGLSLDKVRLARKCSRTIGSIEQEIGDGWCTK 472

Query: 640  FKEFTPDTTLKTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIGK 461
            F E TPDT+LK P EIV++QHM+++I E+L+ LHPRE QVLVLR+GL+DG  +SLEEIG+
Sbjct: 473  FMEITPDTSLKAPSEIVVRQHMREDIFEVLKGLHPREMQVLVLRYGLDDGRCKSLEEIGR 532

Query: 460  LFHVSKEWIRKIEKAALTKVRNGGSKTRLKHYV 362
            LFHV+KEWIRK+EKAAL+K+R    +  LKHY+
Sbjct: 533  LFHVTKEWIRKLEKAALSKIRREEIQRELKHYL 565


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 560

 Score =  499 bits (1285), Expect = e-138
 Identities = 272/569 (47%), Positives = 381/569 (66%), Gaps = 10/569 (1%)
 Frame = -3

Query: 2038 MGIGFLLDWKWVFPIQSNFXXXXXXXXXXXXXXXXXXRGKEASLESAKMSTLSLIPEESE 1859
            MG GF L+ K  FP  S                    RG+EA+   +++S LS+I EE +
Sbjct: 1    MGFGFRLNLKLDFPFHS----PNSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGD 56

Query: 1858 TRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSH---NAFCDLNMPVLED 1688
              ++D LK Y     A+Q++E+ ++  +G K+N G++     SH   N   D  + + ED
Sbjct: 57   IAHRDPLKTYAY-SYAVQTVENEHSQGEGFKVNFGKR-----SHFGLNIIGDAEVSLKED 110

Query: 1687 NSVHLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKLFHACLS 1508
              V   SST + ++ F+LL+ENL  +E+++ADSD+  LE +IL+Q+G+LGALKLF+ CL+
Sbjct: 111  IFVS-PSSTKERTSRFSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLT 169

Query: 1507 RTLKAPDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMRERV-AEKVAKI 1331
            RTL+  + ++V+   T+   +  I+    +    + V + KK  RKS RER  A K  K 
Sbjct: 170  RTLETTNVLEVSDVHTEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKS 229

Query: 1330 SDFPLHSKSVN------LVQQLTKSSNPKRRRFAVARNEMEMAKGLKELTNLERIRSTLE 1169
               PL S+ +        V    K+S  K RR  +ARNE EMA+G+K L +LE+IR+TLE
Sbjct: 230  PSLPLPSRPIQSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLE 289

Query: 1168 ERTGRGASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRRGISLE 989
            E T R  SL+ WA AAG+  KVLQQ+L FGW+CRD L+KS  SLVLY ARNYR  GI+LE
Sbjct: 290  EETERVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALE 349

Query: 988  DLLQAGNMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLNDIIEQ 809
            DLLQAGN+GVL+GAERFDHTRGYRFSTYVQYWIRKSMS ++++ ++GI+IP TL+  I Q
Sbjct: 350  DLLQAGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQ 409

Query: 808  TKKARRSLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHVKFKEF 629
             +KAR++L  SNG +P D+EIAK  G+S+A I  A++C R +GSIDQKIG+ ++ K+ EF
Sbjct: 410  IQKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEF 469

Query: 628  TPDTTLKTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIGKLFHV 449
             PDT++++PEE+VM+QHM +++  LL  L  RERQVL+LRFGL D   +SLEEIG+ FHV
Sbjct: 470  LPDTSVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHV 529

Query: 448  SKEWIRKIEKAALTKVRNGGSKTRLKHYV 362
            SKEW+R++EK  +T++RN  +   L+HY+
Sbjct: 530  SKEWVRRLEKRVMTRLRNEETCRNLRHYI 558


>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
            gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
            C, putative [Theobroma cacao]
          Length = 848

 Score =  497 bits (1280), Expect = e-137
 Identities = 264/515 (51%), Positives = 357/515 (69%), Gaps = 7/515 (1%)
 Frame = -3

Query: 1882 SLIPEESETRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSHNAFCDLNM 1703
            S +P       KD LK Y     A Q++E      + MK+NIG+            D   
Sbjct: 335  SRLPSSGVLSLKDPLKAYAS-SAAPQTLEKGCLEIEEMKVNIGKGSQAHSHSLTMIDKTH 393

Query: 1702 PVLE-DNSVHLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKL 1526
             ++  D S    S  +  ++H++LLMENL  +EET+ADSD + LEREIL+Q+GR GALKL
Sbjct: 394  ELIGGDKSSSRTSPQACKASHYSLLMENLDVLEETFADSDVLTLEREILLQLGRFGALKL 453

Query: 1525 FHACLSRTLKAPDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMRERVAE 1346
            F+ CLSRTLKA + + ++  +  +S D  ++  +  + DNI V S KK +RK +RER  E
Sbjct: 454  FNTCLSRTLKASNILDLS-DVPANSGDCNMNLSVDGQKDNIVVCSRKKKQRKKIRERALE 512

Query: 1345 KVAKISDFPLHSKSVNLVQQLTKSSNPKR------RRFAVARNEMEMAKGLKELTNLERI 1184
                IS   + S +++   Q  K S+ KR      RR  +ARNE EM+KG+K + NLERI
Sbjct: 513  NPTIISTQLMPSNTLHGRFQKPKVSSAKRVSDSRSRRLRIARNEAEMSKGVKVVANLERI 572

Query: 1183 RSTLEERTGRGASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRR 1004
            R+TLEE TGR ASL+ WA AAG+ EKVLQQ L FGW+CRD LL+S  SLVLY ARNYR  
Sbjct: 573  RTTLEEETGRAASLSCWAEAAGVSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARNYRGL 632

Query: 1003 GISLEDLLQAGNMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLN 824
            GI+ EDL+QAG++GVLQGAERFDHTRGYRFSTYVQ+WIRKS+S ++A+H++GI++P TL+
Sbjct: 633  GIAHEDLIQAGSLGVLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVPCTLS 692

Query: 823  DIIEQTKKARRSLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHV 644
              I Q +KAR++L KS+G +P ++ IAK  G+S+A IR ANKC R +GSIDQKIGDCM+ 
Sbjct: 693  RAIVQIQKARKALSKSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDCMNA 752

Query: 643  KFKEFTPDTTLKTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIG 464
            K+ EF PD ++++PE+ VM+QHM+++I +LL  L  RERQV+VLR+GL+    +SLEEIG
Sbjct: 753  KYLEFIPDLSVRSPEKTVMRQHMKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSLEEIG 812

Query: 463  KLFHVSKEWIRKIEKAALTKVRNGGSKTRLKHYVE 359
            +LFHVSKEWIR+IE  A+ K+R+  +   L HY++
Sbjct: 813  RLFHVSKEWIRRIEMKAMKKLRDKETCRNLSHYLD 847


>ref|XP_006853783.2| PREDICTED: RNA polymerase sigma factor sigC [Amborella trichopoda]
          Length = 564

 Score =  493 bits (1270), Expect = e-136
 Identities = 266/534 (49%), Positives = 363/534 (67%), Gaps = 14/534 (2%)
 Frame = -3

Query: 1921 KEASLESAKMSTLSLIPEESETRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEA 1742
            K+ S+ESAK STLS+IPEE+E    D  K +    G +Q+  SS+   + MKMNI + + 
Sbjct: 45   KQPSIESAKASTLSVIPEETERLLGDCTKDFPYFFGDIQNANSSHDITEEMKMNINKNKP 104

Query: 1741 CVDSHNAFCDLNMPVLEDNSVHLVSSTSDNST---HFNLLMENLKEIEETYADSDSVMLE 1571
                     D ++ V++   + +   T  N     HF+ L ENL++IE    DS +  LE
Sbjct: 105  ---------DASLYVIDKAELPIAEDTFSNVAGLPHFSFLFENLEKIEGIIVDSGNARLE 155

Query: 1570 REILIQIGRLGALKLFHACLSRTLKAPDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFS 1391
            REIL+ I RLGALKLFHA LSRTLK P  + V     +H+    + +PM  + D   V S
Sbjct: 156  REILLHIERLGALKLFHAFLSRTLKDPKILDVTGTCPEHA----MVQPMDEQADGYIVSS 211

Query: 1390 GKKSRRKSMRERVAEKVAKISDFPLHSKSVNLVQQLTKS-----------SNPKRRRFAV 1244
            GKK  RK+ RER  +KV   +D P+   S+  V++ TKS            N K R    
Sbjct: 212  GKKVERKAQRERALKKV---TDEPIVCSSLKRVKKSTKSINAALTHKGHPGNSKSRSHLR 268

Query: 1243 ARNEMEMAKGLKELTNLERIRSTLEERTGRGASLTSWARAAGIGEKVLQQRLHFGWHCRD 1064
            A++E+EM++G++E+  LE+IR+ LEE  GR AS + WA AAGI EKVL+Q+LHFGW CRD
Sbjct: 269  AQSEVEMSRGVQEVAKLEKIRANLEENLGRDASFSVWAEAAGINEKVLKQQLHFGWFCRD 328

Query: 1063 NLLKSAHSLVLYIARNYRRRGISLEDLLQAGNMGVLQGAERFDHTRGYRFSTYVQYWIRK 884
             LL+S   LV+Y+A++YR RGI  EDLLQAG++GVLQGAERFDHTRGYRFSTYVQYWIRK
Sbjct: 329  KLLRSTRPLVMYLAKSYRGRGIGFEDLLQAGSLGVLQGAERFDHTRGYRFSTYVQYWIRK 388

Query: 883  SMSSLIAQHSKGIKIPVTLNDIIEQTKKARRSLYKSNGTFPRDEEIAKLAGVSVASIRLA 704
            S+S+L+A+HS+G++IP+ LN ++ QT KA+R+L++ +G  PR+ EIA+  G+S+ ++RLA
Sbjct: 389  SLSALVARHSRGVQIPMALNKVLNQTVKAKRALHQMHGRHPREVEIAEFTGLSLVNVRLA 448

Query: 703  NKCSRAIGSIDQKIGDCMHVKFKEFTPDTTLKTPEEIVMKQHMQKEIQELLEHLHPRERQ 524
            NKC R  GSIDQ+IGD     + E T DT ++TPE++VMKQHM++ I E+L +LHPRE+Q
Sbjct: 449  NKCLRVHGSIDQRIGDNWGATYMEVTADTFIETPEKMVMKQHMREAIHEVLVNLHPREKQ 508

Query: 523  VLVLRFGLEDGSRRSLEEIGKLFHVSKEWIRKIEKAALTKVRNGGSKTRLKHYV 362
            VL+LR+GL DG  +SLEEIG+L++V+KEWIRKIEK AL KVR    +  L  ++
Sbjct: 509  VLMLRYGLWDGRCKSLEEIGRLYNVTKEWIRKIEKMALEKVRKEEVQCNLNFFL 562


>gb|ERN15250.1| hypothetical protein AMTR_s00056p00209700 [Amborella trichopoda]
          Length = 529

 Score =  493 bits (1270), Expect = e-136
 Identities = 266/534 (49%), Positives = 363/534 (67%), Gaps = 14/534 (2%)
 Frame = -3

Query: 1921 KEASLESAKMSTLSLIPEESETRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEA 1742
            K+ S+ESAK STLS+IPEE+E    D  K +    G +Q+  SS+   + MKMNI + + 
Sbjct: 10   KQPSIESAKASTLSVIPEETERLLGDCTKDFPYFFGDIQNANSSHDITEEMKMNINKNKP 69

Query: 1741 CVDSHNAFCDLNMPVLEDNSVHLVSSTSDNST---HFNLLMENLKEIEETYADSDSVMLE 1571
                     D ++ V++   + +   T  N     HF+ L ENL++IE    DS +  LE
Sbjct: 70   ---------DASLYVIDKAELPIAEDTFSNVAGLPHFSFLFENLEKIEGIIVDSGNARLE 120

Query: 1570 REILIQIGRLGALKLFHACLSRTLKAPDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFS 1391
            REIL+ I RLGALKLFHA LSRTLK P  + V     +H+    + +PM  + D   V S
Sbjct: 121  REILLHIERLGALKLFHAFLSRTLKDPKILDVTGTCPEHA----MVQPMDEQADGYIVSS 176

Query: 1390 GKKSRRKSMRERVAEKVAKISDFPLHSKSVNLVQQLTKS-----------SNPKRRRFAV 1244
            GKK  RK+ RER  +KV   +D P+   S+  V++ TKS            N K R    
Sbjct: 177  GKKVERKAQRERALKKV---TDEPIVCSSLKRVKKSTKSINAALTHKGHPGNSKSRSHLR 233

Query: 1243 ARNEMEMAKGLKELTNLERIRSTLEERTGRGASLTSWARAAGIGEKVLQQRLHFGWHCRD 1064
            A++E+EM++G++E+  LE+IR+ LEE  GR AS + WA AAGI EKVL+Q+LHFGW CRD
Sbjct: 234  AQSEVEMSRGVQEVAKLEKIRANLEENLGRDASFSVWAEAAGINEKVLKQQLHFGWFCRD 293

Query: 1063 NLLKSAHSLVLYIARNYRRRGISLEDLLQAGNMGVLQGAERFDHTRGYRFSTYVQYWIRK 884
             LL+S   LV+Y+A++YR RGI  EDLLQAG++GVLQGAERFDHTRGYRFSTYVQYWIRK
Sbjct: 294  KLLRSTRPLVMYLAKSYRGRGIGFEDLLQAGSLGVLQGAERFDHTRGYRFSTYVQYWIRK 353

Query: 883  SMSSLIAQHSKGIKIPVTLNDIIEQTKKARRSLYKSNGTFPRDEEIAKLAGVSVASIRLA 704
            S+S+L+A+HS+G++IP+ LN ++ QT KA+R+L++ +G  PR+ EIA+  G+S+ ++RLA
Sbjct: 354  SLSALVARHSRGVQIPMALNKVLNQTVKAKRALHQMHGRHPREVEIAEFTGLSLVNVRLA 413

Query: 703  NKCSRAIGSIDQKIGDCMHVKFKEFTPDTTLKTPEEIVMKQHMQKEIQELLEHLHPRERQ 524
            NKC R  GSIDQ+IGD     + E T DT ++TPE++VMKQHM++ I E+L +LHPRE+Q
Sbjct: 414  NKCLRVHGSIDQRIGDNWGATYMEVTADTFIETPEKMVMKQHMREAIHEVLVNLHPREKQ 473

Query: 523  VLVLRFGLEDGSRRSLEEIGKLFHVSKEWIRKIEKAALTKVRNGGSKTRLKHYV 362
            VL+LR+GL DG  +SLEEIG+L++V+KEWIRKIEK AL KVR    +  L  ++
Sbjct: 474  VLMLRYGLWDGRCKSLEEIGRLYNVTKEWIRKIEKMALEKVRKEEVQCNLNFFL 527


>gb|KDO79960.1| hypothetical protein CISIN_1g009449mg [Citrus sinensis]
          Length = 534

 Score =  493 bits (1268), Expect = e-136
 Identities = 264/565 (46%), Positives = 375/565 (66%), Gaps = 6/565 (1%)
 Frame = -3

Query: 2038 MGIGFLLDWKWVFPIQSNFXXXXXXXXXXXXXXXXXXRGKEASLESAKMSTLSLIPEESE 1859
            MG+GF L+ KWV P+QS+F                   G+E S  SA++S LS I E+S 
Sbjct: 1    MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVR-----GREGSFNSARLSFLSTISEDSA 55

Query: 1858 TRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSHNAFCDLNMPVLEDNSV 1679
            + ++D +K YTC     Q++E+ Y+  + ++    +  +C+                   
Sbjct: 56   SYFQDPVKAYTCSFVNTQTVENDYSETEEIRQ---KSTSCIGQD---------------- 96

Query: 1678 HLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKLFHACLSRTL 1499
               SS SD    F LLMENL  +E T+ADSD++ LEREIL Q+G+LGALKLF++ LSR +
Sbjct: 97   --ASSRSD----FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIV 150

Query: 1498 KAPDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMRERVAEKVAKISDFP 1319
            K  + + ++     H+++  ++      M  I V S +K +RK    RV+E+  + S   
Sbjct: 151  KTSNVLDLS---DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLS 207

Query: 1318 LHSKSVN------LVQQLTKSSNPKRRRFAVARNEMEMAKGLKELTNLERIRSTLEERTG 1157
            L S+++        +    ++ N + RR  +ARNE EM+KG++ + NLERI++TLE+ +G
Sbjct: 208  LPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESG 267

Query: 1156 RGASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRRGISLEDLLQ 977
            + ASL  WA+AAG+ E+VL+Q L FGW+CR+ L+KS   LVL++ARNYR  GI   DLLQ
Sbjct: 268  KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327

Query: 976  AGNMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLNDIIEQTKKA 797
            AGN+GVLQGAERFDHTRGY+FSTYVQYWIRKS+S ++A+H++GIKIP  LN  I + +KA
Sbjct: 328  AGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKA 387

Query: 796  RRSLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHVKFKEFTPDT 617
            R++L  S+G +P D EIAK  G+S+A IR A++C R +GSIDQKIGDC++ K+ EF PD 
Sbjct: 388  RKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDR 447

Query: 616  TLKTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIGKLFHVSKEW 437
            ++K+P+EIVM+QHM+K++  +LE L  RERQVLVLR+GL D   +SLEEIGKLFHVSKEW
Sbjct: 448  SVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEW 507

Query: 436  IRKIEKAALTKVRNGGSKTRLKHYV 362
            IRK+EK A+TK+R+  +   L H++
Sbjct: 508  IRKLEKKAMTKLRDSETCRDLSHFL 532


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
            gi|557553989|gb|ESR64003.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  491 bits (1265), Expect = e-136
 Identities = 266/565 (47%), Positives = 378/565 (66%), Gaps = 6/565 (1%)
 Frame = -3

Query: 2038 MGIGFLLDWKWVFPIQSNFXXXXXXXXXXXXXXXXXXRGKEASLESAKMSTLSLIPEESE 1859
            MG+GF L+ KWV P+QS+F                   G+E S  SA++S LS I E+S 
Sbjct: 1    MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVR-----GREGSFNSARLSFLSTISEDSA 55

Query: 1858 TRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSHNAFCDLNMPVLEDNSV 1679
            + ++D +K YTC     Q++E+ Y+  + ++    +  +C+                   
Sbjct: 56   SYFQDPVKAYTCSFVNTQTVENDYSETEEIRQ---KSTSCIGQD---------------- 96

Query: 1678 HLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKLFHACLSRTL 1499
               SS SD    F LLMENL  +E T+ADSD++ LEREIL Q+G+LGALKLF++ LSR +
Sbjct: 97   --ASSRSD----FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIV 150

Query: 1498 KAPDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMRERVAEKVAKISDFP 1319
            K  + + ++     H+++  ++      M  I V S +K +RK    RV+E+  + S   
Sbjct: 151  KTSNVLDLS---DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLS 207

Query: 1318 LHSKSVNL-VQQLT-----KSSNPKRRRFAVARNEMEMAKGLKELTNLERIRSTLEERTG 1157
            L S+++   ++Q T     ++ N + RR  +ARNE EM+KG++ + NLERI++TLE+ +G
Sbjct: 208  LPSEALQEGLKQPTIFSPERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESG 267

Query: 1156 RGASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRRGISLEDLLQ 977
            + ASL  WA+AAG+ E+VL+Q L FGW+CR+ L+KS   LVL++ARNYR  GI   DLLQ
Sbjct: 268  KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327

Query: 976  AGNMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLNDIIEQTKKA 797
            AGN+GVLQGAERFDHTRGY+FSTYVQYWIRKS+S ++A+H++GIKIP  LN  I + +KA
Sbjct: 328  AGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKA 387

Query: 796  RRSLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHVKFKEFTPDT 617
            R++L  S+G +P D EIAK  G+S+A IR A++C R +GSIDQKIGDC++ K+ EF PD 
Sbjct: 388  RKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDR 447

Query: 616  TLKTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIGKLFHVSKEW 437
            ++K+P+EIVM+QHM+K++  +LE L  RERQVLVLR+GL D   +SLEEIGKLFHVSKEW
Sbjct: 448  SVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEW 507

Query: 436  IRKIEKAALTKVRNGGSKTRLKHYV 362
            IRK+EK A+TK+R+  +   L H++
Sbjct: 508  IRKLEKKAMTKLRDSETCRDLSHFL 532


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  488 bits (1255), Expect = e-134
 Identities = 262/565 (46%), Positives = 372/565 (65%), Gaps = 6/565 (1%)
 Frame = -3

Query: 2038 MGIGFLLDWKWVFPIQSNFXXXXXXXXXXXXXXXXXXRGKEASLESAKMSTLSLIPEESE 1859
            MG+GF L+ KWV P+QS+F                   G+E S  SA++S LS I E+S 
Sbjct: 1    MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVR-----GREGSFNSARLSFLSTISEDSA 55

Query: 1858 TRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSHNAFCDLNMPVLEDNSV 1679
            + ++D +K YTC     Q++E+ Y+  + ++    +  +C+                   
Sbjct: 56   SYFQDPVKAYTCSFVNTQTVENDYSETEEIRQ---KSTSCIGQD---------------- 96

Query: 1678 HLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKLFHACLSRTL 1499
               SS SD    F LLMENL  +E T+ADSD++ LEREIL Q+G+LGALKLF++ LSR +
Sbjct: 97   --ASSRSD----FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIV 150

Query: 1498 KAPDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMRERVAEKVAKISDFP 1319
            K  + + ++     H+++  +       M  I V S +K +RK    RV+E+  +     
Sbjct: 151  KTSNVLDLS---DVHTEEQKMDDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETYLLS 207

Query: 1318 LHSKSVN------LVQQLTKSSNPKRRRFAVARNEMEMAKGLKELTNLERIRSTLEERTG 1157
            L S+++        +    ++ N + RR  +ARNE EM+KG++ + NLERI++TLE+ +G
Sbjct: 208  LPSEALQEGLKQPTIFSAERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESG 267

Query: 1156 RGASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRRGISLEDLLQ 977
            + A L  WA+AAG+ E+VL+Q L FGW+CR+ L+KS   LVL++ARNYR  GI   DLLQ
Sbjct: 268  KAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327

Query: 976  AGNMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLNDIIEQTKKA 797
            AGN+GVLQGAERFDHTRGY+FSTYVQYWIRKS+S ++A+H++GIKIP  LN  I + +KA
Sbjct: 328  AGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKA 387

Query: 796  RRSLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHVKFKEFTPDT 617
            R++L  S+G +P D EIAK  G+S+A IR A++C R +GSIDQKIGDC++ K+ EF PD 
Sbjct: 388  RKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDR 447

Query: 616  TLKTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIGKLFHVSKEW 437
            ++K+P+EIVM+QHM+K++  +LE L  RERQVLVLR+GL D   +SLEEIGKLFHVSKEW
Sbjct: 448  SVKSPKEIVMRQHMKKDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEW 507

Query: 436  IRKIEKAALTKVRNGGSKTRLKHYV 362
            IRK+EK A+TK+R+  +   L H++
Sbjct: 508  IRKLEKKAMTKLRDSETCRDLSHFL 532


>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
            gi|462419859|gb|EMJ24122.1| hypothetical protein
            PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  486 bits (1252), Expect = e-134
 Identities = 266/565 (47%), Positives = 370/565 (65%), Gaps = 6/565 (1%)
 Frame = -3

Query: 2038 MGIGFLLDWKWVFPIQSNFXXXXXXXXXXXXXXXXXXRGKEASLESAKMSTLSLIPEESE 1859
            MG+GF L+ K  FP+ S+                    G+E S  SA++S LS+I EE E
Sbjct: 1    MGLGFRLNLKCGFPVHSSHWQTTSPSKISSTSVR----GREGSFNSARLSFLSVISEEGE 56

Query: 1858 TRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSHNAFCDLNMPVLEDNSV 1679
               KD LK YT P  + Q +E   +  + +K              +F D  MPV E   +
Sbjct: 57   ASSKDPLKVYTFPSASPQILEDGVSELEEVKTAFRRVP------KSFSDNQMPVAEGKFI 110

Query: 1678 HLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKLFHACLSRTL 1499
                  +  ++HF+LL++NL  +EET+A SD + LE+EIL+Q+ RLGALKLF  CLSRTL
Sbjct: 111  SSKGLEACTASHFSLLLQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDICLSRTL 170

Query: 1498 KAPDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMRERVAEKVAKISDFP 1319
            K    + ++   T   ++  + R   + +  I V SGKK  R+S R+R ++  A +S   
Sbjct: 171  KTSSFLDLSDIPTVPVEEGKMERKEDNNVGEIIVRSGKKEERRS-RKRTSDN-AIVSSNS 228

Query: 1318 LHSKSV------NLVQQLTKSSNPKRRRFAVARNEMEMAKGLKELTNLERIRSTLEERTG 1157
            L  K++        +    ++SN + RR  +++NE EM+ G+K + +LERI+ TLE+ TG
Sbjct: 229  LPPKTIWKGLKKPTLSSGKRASNYRSRRLTISKNEAEMSIGVKVIADLERIKETLEKETG 288

Query: 1156 RGASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRRGISLEDLLQ 977
            + A+L  WA AAG+ EKVL Q L FGW+C+D L++S  SLVLY+ARNYR  G++L+DL+Q
Sbjct: 289  KVATLRCWAEAAGVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLARNYRGLGVALDDLMQ 348

Query: 976  AGNMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLNDIIEQTKKA 797
            AGN+G+LQGAERFDH+RGYRFSTYVQYWIRKSMS L+AQH++G++IP TL+  I Q +KA
Sbjct: 349  AGNLGLLQGAERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQIQKA 408

Query: 796  RRSLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHVKFKEFTPDT 617
            R++ Y S+  +P DEEIAK+ G+S+A IR A+ C R +GS+D K+ +     + EFTPDT
Sbjct: 409  RKANYNSHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDT 468

Query: 616  TLKTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIGKLFHVSKEW 437
            +LK+PEE VM+QHM+K+I +LL+ L+ RERQVLVLR+GL +   +SLEEIG+LFHVSKEW
Sbjct: 469  SLKSPEETVMRQHMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEW 528

Query: 436  IRKIEKAALTKVRNGGSKTRLKHYV 362
            IRKIEK AL K+R   S   L HY+
Sbjct: 529  IRKIEKKALMKLRVEESHKYLSHYL 553


>ref|XP_010047303.1| PREDICTED: RNA polymerase sigma factor sigC [Eucalyptus grandis]
            gi|629114510|gb|KCW79185.1| hypothetical protein
            EUGRSUZ_C00620 [Eucalyptus grandis]
          Length = 556

 Score =  485 bits (1248), Expect = e-134
 Identities = 268/569 (47%), Positives = 369/569 (64%), Gaps = 11/569 (1%)
 Frame = -3

Query: 2038 MGIGFLLDWKW-VFPIQSNFXXXXXXXXXXXXXXXXXXRGKEASLESAKMSTLSLIPEES 1862
            MG+GF L+ K  V P+QS+                    GKEAS  S ++S+LS I EE 
Sbjct: 1    MGMGFRLNLKCCVVPVQSHLLSSSPTRLSSSVR------GKEASFSSGRLSSLSSIAEEV 54

Query: 1861 ETRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKE-ACVDSHNAFCDLNMPVLEDN 1685
            E  +K   +   C   +  ++E   +     ++ IG++    ++S      +++     N
Sbjct: 55   EPCHKYHSRSCKCSSASAPALEDGLSEMTNTEVTIGKRPFGSINSDPG--GIHISHKARN 112

Query: 1684 SVHLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKLFHACLSR 1505
            S    +  S  + HF+LLM+NL  +EET ADS+++ LER+IL+Q+GRLGALKLFH CLS+
Sbjct: 113  SKGNTTPKSVKAAHFSLLMDNLNALEETLADSNALNLERDILLQLGRLGALKLFHTCLSK 172

Query: 1504 TLKAPDAIKVAFPLTKHSKDSPISRPMKSRMDNIT---VFSGKKSRRKSMRERVAEKVAK 1334
               APDA +V+        D+ + +   S  DN     + SGK   RKS RER + K  +
Sbjct: 173  AFDAPDACEVS--------DAVVEKKTSSERDNHVKRIIRSGKSEMRKSRRERNSAKPNQ 224

Query: 1333 ISDFPLHSKSVNL------VQQLTKSSNPKRRRFAVARNEMEMAKGLKELTNLERIRSTL 1172
               F L S +         V  L ++SN KRRR  +ARNE EM++G+K +  LE++R+ L
Sbjct: 225  NPPFSLLSTANQKWLQQPSVSSLRRASNSKRRRSIIARNEAEMSRGVKVVAELEKLRAIL 284

Query: 1171 EERTGRGASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRRGISL 992
            EE +G+  SL +WA AAG+ E VL+Q LHFGW CRD LL+S  SLV+++ RNYR  GI+ 
Sbjct: 285  EEESGQVPSLRTWAEAAGVDENVLRQNLHFGWFCRDELLRSTRSLVIFLTRNYRGLGIAH 344

Query: 991  EDLLQAGNMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLNDIIE 812
            EDL+QAGNMGVL+GAERFDHTRGYRFSTYVQYWIRKSMS ++A H++GI+IP TL   + 
Sbjct: 345  EDLIQAGNMGVLRGAERFDHTRGYRFSTYVQYWIRKSMSRMVAWHARGIRIPTTLATAVN 404

Query: 811  QTKKARRSLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHVKFKE 632
            Q +KA++SL      +P D EIAKL G SVA +R A++C R +GSIDQKIGDC++ K+ E
Sbjct: 405  QIQKAQKSLNNHRRKYPDDMEIAKLTGFSVAKVRSASQCLRVVGSIDQKIGDCINAKYME 464

Query: 631  FTPDTTLKTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIGKLFH 452
            FTPD +L++PEE V++Q+M  +IQELL  L  RERQVL+LR+GL+D   +SLEEIG+LF+
Sbjct: 465  FTPDRSLRSPEETVLRQNMSSQIQELLSGLDFRERQVLILRYGLKDNQVKSLEEIGRLFN 524

Query: 451  VSKEWIRKIEKAALTKVRNGGSKTRLKHY 365
            VSKEWIR+IE+ A+ K+R+    + L HY
Sbjct: 525  VSKEWIRRIERKAMEKLRDKDVYSSLSHY 553


>ref|XP_008220144.1| PREDICTED: RNA polymerase sigma factor sigC-like [Prunus mume]
          Length = 553

 Score =  483 bits (1242), Expect = e-133
 Identities = 263/565 (46%), Positives = 370/565 (65%), Gaps = 6/565 (1%)
 Frame = -3

Query: 2038 MGIGFLLDWKWVFPIQSNFXXXXXXXXXXXXXXXXXXRGKEASLESAKMSTLSLIPEESE 1859
            MG+GF L+ K  FP+ S++                   G+E S  SA++S LS+I EE E
Sbjct: 1    MGLGFRLNLKCGFPVHSSYWQTTSPSKLSSTSVR----GREGSFNSARLSFLSVISEEGE 56

Query: 1858 TRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSHNAFCDLNMPVLEDNSV 1679
               KD LK YTCP  + Q +E   +          E+ A      +  D  MPV E   +
Sbjct: 57   ASSKDPLKVYTCPSASPQILEDGVSEM--------EEAAFRRVPKSISDNRMPVAEGKFI 108

Query: 1678 HLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKLFHACLSRTL 1499
                  +  ++HF+LL++NL  +EET+A S+ + LE+EIL+Q+ RLGALKLF  CLSRTL
Sbjct: 109  SSKGLEACTASHFSLLLQNLNVLEETFATSNVLKLEKEILLQLARLGALKLFDICLSRTL 168

Query: 1498 KAPDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMRERVAEKVAKISDFP 1319
            K    + ++   T   ++  + R   + +  I V SGKK  R+S R+R ++  A +S   
Sbjct: 169  KTSSFLDLSDIPTVPVEEGKMERKEDNNVFEIIVRSGKKEERRS-RKRTSDN-AIVSSNS 226

Query: 1318 LHSKSV------NLVQQLTKSSNPKRRRFAVARNEMEMAKGLKELTNLERIRSTLEERTG 1157
            L  K++        +    ++SN + RR  +++NE EM+ G+K + +LERI+ TLE+ TG
Sbjct: 227  LPPKTIWKGLKNPTLSSGKRASNYRSRRLTISKNEAEMSIGVKVIADLERIKETLEKETG 286

Query: 1156 RGASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRRGISLEDLLQ 977
            +  +L  WA AAG+ E+VL Q L FGW+C+D L++S  SLVLY+ARNYR  G++L+DL+Q
Sbjct: 287  KVVTLRCWAEAAGVHERVLLQHLRFGWYCQDELMRSTRSLVLYLARNYRGLGVALDDLIQ 346

Query: 976  AGNMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLNDIIEQTKKA 797
            AGN+G+LQGAERFDH+RGYRFSTYVQYWIRKSMS L+AQH++G++IP TL+  I Q +KA
Sbjct: 347  AGNLGLLQGAERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQIQKA 406

Query: 796  RRSLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHVKFKEFTPDT 617
            R++ Y S+  +P DEEIAK+ G+S+A IR A+ C R +GS+D K+ +     + EFTPDT
Sbjct: 407  RKANYNSHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDT 466

Query: 616  TLKTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIGKLFHVSKEW 437
            +LK+PEE VM+QHM+K+I +LL+ L+ RERQVLVLR+GL +   +SLEEIG+LFHVSKEW
Sbjct: 467  SLKSPEETVMRQHMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEW 526

Query: 436  IRKIEKAALTKVRNGGSKTRLKHYV 362
            IRKIEK AL K++   S   L HY+
Sbjct: 527  IRKIEKKALMKLKVEESHKYLSHYL 551


>gb|AKC88690.1| sigma factor [Melianthus villosus]
          Length = 558

 Score =  480 bits (1235), Expect = e-132
 Identities = 269/560 (48%), Positives = 362/560 (64%), Gaps = 1/560 (0%)
 Frame = -3

Query: 2038 MGIGFLLDWKWVFPIQSNFXXXXXXXXXXXXXXXXXXRGKEASLESAKMSTLSLIPEESE 1859
            MGIGF L  KW FP+QS+                   RG+EA + SA +S LS I EE +
Sbjct: 1    MGIGFKLHLKWGFPLQSH-----PLPDSPSRLSSSSVRGREAYISSASLSFLSNISEEGD 55

Query: 1858 TRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSHNAFCDLNMPVLEDNSV 1679
            T Y++ L    C   + Q+++      + MK+NIG++     +     D N  + E    
Sbjct: 56   TCYRNLLNAKACSFASPQTLDGGSLKFEEMKINIGKRSG--SNLRNMIDGNQRLGEGRYT 113

Query: 1678 HLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKLFHACLSRTL 1499
              +S  + N + F LL++NL  +E T+ DS+  +LE++IL Q+ +LGA KLF   LSRTL
Sbjct: 114  SQISLETCNISQFRLLVQNLDTLEGTFVDSNISLLEKDILKQLEKLGARKLFDTRLSRTL 173

Query: 1498 KAPDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMRERVAEKVAKISDFP 1319
            +A +   ++     + KD   +  M  ++    V SGKK+ RKS R R +E   K+S   
Sbjct: 174  RASNLFDLSDVPIGNIKDPETNTIMGDQIGKTFVCSGKKAERKSRRARASENSNKMSSIS 233

Query: 1318 LHSKSVNL-VQQLTKSSNPKRRRFAVARNEMEMAKGLKELTNLERIRSTLEERTGRGASL 1142
            L  K+V    Q+ T SS  + RR  +ARNE EM++G+K + +LERI++ LE+ TGR A+L
Sbjct: 234  LPLKAVRKGFQKPTLSS--RGRRTMIARNEAEMSRGVKVIADLERIKTILEKETGRIATL 291

Query: 1141 TSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRRGISLEDLLQAGNMG 962
            +SWA AAG+ +K L Q L +GW+CRD LL+S  SLVLY+ARNYR  GI+ EDLLQ+GN+G
Sbjct: 292  SSWAEAAGVDKKDLHQHLLYGWYCRDELLRSTRSLVLYLARNYRGLGIAHEDLLQSGNLG 351

Query: 961  VLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLNDIIEQTKKARRSLY 782
            VLQGAERFDHTRGY+ STYVQYWIRKSMS  +AQH++G+KIP TL+ +I Q +KARRSL 
Sbjct: 352  VLQGAERFDHTRGYKLSTYVQYWIRKSMSRTVAQHARGVKIPYTLSRVINQIQKARRSLS 411

Query: 781  KSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHVKFKEFTPDTTLKTP 602
              +G FP D EIAK  G+S+  I  A KC R +GSIDQK+ DC  VK+ E TPD ++  P
Sbjct: 412  SIHGNFPDDTEIAKATGLSLEKIGTAKKCFRVVGSIDQKLEDCFSVKYMELTPDISVPNP 471

Query: 601  EEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIGKLFHVSKEWIRKIE 422
            EE VM+QHM K I +LL+ L  RE QVLVLRFGL +   +SLEEIG++FHVSKEWIR++E
Sbjct: 472  EESVMRQHMIKGIYDLLKCLDQREMQVLVLRFGLHNHHPKSLEEIGRIFHVSKEWIRRVE 531

Query: 421  KAALTKVRNGGSKTRLKHYV 362
            K ALT +RN  +   L HY+
Sbjct: 532  KKALTNLRNAENGRELGHYL 551


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC [Fragaria vesca subsp.
            vesca]
          Length = 545

 Score =  479 bits (1232), Expect = e-132
 Identities = 267/569 (46%), Positives = 367/569 (64%), Gaps = 9/569 (1%)
 Frame = -3

Query: 2038 MGIGFLLDWKWVFPIQSNFXXXXXXXXXXXXXXXXXXRGKEASLESAKMSTLSLIPEESE 1859
            MG+GF L+ K  FPI ++                    G+E S  SA +S LS+I EE E
Sbjct: 1    MGLGFRLNLKCGFPIHNSHWQTNSPSKLPSSSVR----GREGSFSSAGLSFLSVISEECE 56

Query: 1858 TRYKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSHNAFCDLNMPVLEDNSV 1679
            T  KD LK YTCP  + Q ++            + E E  ++        +  +++D   
Sbjct: 57   TSSKDPLKVYTCPSASPQLLDDG----------LSEMEEKMNPRRMSKSGSANMIDDKEY 106

Query: 1678 HLVSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKLFHACLSRTL 1499
              +SS    ++H+ LL++NL  +EET+ADS    LE+EIL+Q+GRLGALKLF  CLSRTL
Sbjct: 107  SFMSSAGLRTSHYTLLLQNLNVLEETFADSGVSKLEKEILLQLGRLGALKLFEICLSRTL 166

Query: 1498 KAPDAIKVAF----PLTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMRERVAEKVAKI 1331
            K    + ++     P+ KH          K+   NI V SGKK  +KS R+R +    K 
Sbjct: 167  KTSSFLDLSDIPTEPIEKH----------KTERKNI-VRSGKKEEQKS-RKRTSYDSKKF 214

Query: 1330 SD-FPLHSKSVNLVQ----QLTKSSNPKRRRFAVARNEMEMAKGLKELTNLERIRSTLEE 1166
            S   P+        +     + ++SN + RR  +A+NE EM+ G+K + +LER++ TLE+
Sbjct: 215  SGTLPVKQMREGFKKPNPSSVRRASNSRSRRLMMAKNEAEMSVGVKVIADLERLKVTLEK 274

Query: 1165 RTGRGASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRRGISLED 986
             TG+  +L  WA AAG+ EKVLQQ+LHFGW+C+D L++S  SLVLY+ARNYR  G++L+D
Sbjct: 275  ETGKVPTLRCWAEAAGVDEKVLQQQLHFGWYCQDELVRSTRSLVLYLARNYRGLGVALDD 334

Query: 985  LLQAGNMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLNDIIEQT 806
            LLQAGN+G+LQGAERFD +RGYRFSTYVQYWIRKSMS L+AQH++GIKIP TL+  I + 
Sbjct: 335  LLQAGNLGLLQGAERFDPSRGYRFSTYVQYWIRKSMSRLVAQHARGIKIPNTLSKAINRI 394

Query: 805  KKARRSLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHVKFKEFT 626
            +KAR++ Y S+  +P DEEIAK+ G+S+A I  A++C R +GS+D KI +C    + EFT
Sbjct: 395  QKARKANYNSHMKYPDDEEIAKITGLSLAKISSASRCLRVVGSVDHKIWECSAGTYMEFT 454

Query: 625  PDTTLKTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIGKLFHVS 446
            PD  ++TPEE VM+QHM+ +I  LLE L+ RE++VL LR+GL   + +SLEEIG+LFHVS
Sbjct: 455  PDIAVETPEESVMRQHMKNDIHVLLEGLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVS 514

Query: 445  KEWIRKIEKAALTKVRNGGSKTRLKHYVE 359
            KEWIRKIEK ALTK+RN  S   L HY++
Sbjct: 515  KEWIRKIEKNALTKLRNEESNKNLSHYLK 543


>gb|AKC88685.1| sigma factor [Francoa sonchifolia]
          Length = 540

 Score =  476 bits (1224), Expect = e-131
 Identities = 265/563 (47%), Positives = 361/563 (64%), Gaps = 6/563 (1%)
 Frame = -3

Query: 2032 IGFLLDWKWVFPIQSNFXXXXXXXXXXXXXXXXXXRGKEASLESAKMSTLSLIPEESETR 1853
            +GF L+ KW FPIQS+                   RG+EAS+ SA++S LS+I EE ET 
Sbjct: 1    MGFRLNLKWGFPIQSH-----SLPNSPSRLCSSSVRGREASINSARLSFLSIISEEGETL 55

Query: 1852 YKDSLKQYTCPDGALQSIESSYAAAQGMKMNIGEKEACVDSHNAFCDLNMPVLEDNSVHL 1673
             +  +K Y C   A Q +E         K N+    + +D +        P  E  S   
Sbjct: 56   RRVLVKAYACSFAARQMLE---------KENL---HSMIDDN--------PTEEGKSTSQ 95

Query: 1672 VSSTSDNSTHFNLLMENLKEIEETYADSDSVMLEREILIQIGRLGALKLFHACLSRTLKA 1493
            +S  +  ++HF LL++NL  +E+T+ADS  + LE +IL+Q+ RLGA  LF  CLS+TL+ 
Sbjct: 96   MSVEARKASHFRLLVQNLDVLEKTFADSSVLRLESDILLQLERLGARNLFDTCLSKTLE- 154

Query: 1492 PDAIKVAFPLTKHSKDSPISRPMKSRMDNITVFSGKKSRRKSMRERVAEKVAKISDFPLH 1313
             D+  ++    +H ++      M  ++  I V S KK  RKS R R +E  +KIS  PL 
Sbjct: 155  -DSNDLSNVPIEHMEEQKTVIAMDDQIGKIFVCSRKKEERKSKRARASENASKISSMPLR 213

Query: 1312 SKSVNLVQQLTKSSNPKR------RRFAVARNEMEMAKGLKELTNLERIRSTLEERTGRG 1151
            SK+     Q    S+ KR      RR  +ARNE EM++G+K + +LERIR+TLE+ TGR 
Sbjct: 214  SKTARKGYQQPAHSSSKRGSNSRGRRLMIARNEAEMSRGVKVIQDLERIRTTLEKETGRV 273

Query: 1150 ASLTSWARAAGIGEKVLQQRLHFGWHCRDNLLKSAHSLVLYIARNYRRRGISLEDLLQAG 971
             SL++WA AAGI EKVL Q L +GW+CRD LL+S  SLVLY+ARNYR  GI+ EDLLQAG
Sbjct: 274  VSLSTWAEAAGIDEKVLNQDLRYGWYCRDELLRSTRSLVLYLARNYRGLGIASEDLLQAG 333

Query: 970  NMGVLQGAERFDHTRGYRFSTYVQYWIRKSMSSLIAQHSKGIKIPVTLNDIIEQTKKARR 791
             +GVLQGAERFDHTRGY+ STYVQYWIRKSMS ++AQH++G++IP TL+ +I + +KAR+
Sbjct: 334  KLGVLQGAERFDHTRGYKLSTYVQYWIRKSMSRMVAQHARGVQIPYTLSRVINRVQKARK 393

Query: 790  SLYKSNGTFPRDEEIAKLAGVSVASIRLANKCSRAIGSIDQKIGDCMHVKFKEFTPDTTL 611
            +L  S+G +P D EIAK  G+S+  IR A KC R +GSIDQK+  C  VK+ E TPD ++
Sbjct: 394  ALSNSHGKYPDDAEIAKATGISLEKIRSAKKCLRVVGSIDQKMEGCFGVKYMELTPDISI 453

Query: 610  KTPEEIVMKQHMQKEIQELLEHLHPRERQVLVLRFGLEDGSRRSLEEIGKLFHVSKEWIR 431
              PEE V++QHM K++   L+ L  RE QVL+LR+GL +   +SLEEIG+LF VSKEWIR
Sbjct: 454  PCPEETVIRQHMIKDLYNHLQGLDQREMQVLILRYGLNNHHPKSLEEIGRLFCVSKEWIR 513

Query: 430  KIEKAALTKVRNGGSKTRLKHYV 362
            ++EK ALT +R   ++  L HY+
Sbjct: 514  RVEKKALTNLRKEETRRSLIHYL 536