BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00002203
         (2044 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-...   663   0.0  
ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-...   661   0.0  
gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   653   0.0  
ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB ...   645   0.0  
ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB ...   643   0.0  
ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB ...   641   0.0  
gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sin...   637   e-179
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-...   635   e-179
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr...   632   e-178
ref|XP_008240611.1| PREDICTED: RNA polymerase sigma factor sigB ...   631   e-178
ref|XP_008805674.1| PREDICTED: RNA polymerase sigma factor sigB-...   630   e-177
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   628   e-177
ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cac...   627   e-177
ref|XP_009377635.1| PREDICTED: RNA polymerase sigma factor sigB ...   618   e-174
ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB ...   617   e-174
ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus nota...   617   e-173
ref|XP_008392513.1| PREDICTED: RNA polymerase sigma factor sigB ...   615   e-173
ref|XP_009398609.1| PREDICTED: RNA polymerase sigma factor sigB-...   612   e-172
ref|XP_010918654.1| PREDICTED: RNA polymerase sigma factor sigB-...   611   e-172
gb|KJB46073.1| hypothetical protein B456_007G347300 [Gossypium r...   608   e-171

>ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-like [Nelumbo nucifera]
          Length = 572

 Score =  663 bits (1711), Expect = 0.0
 Identities = 362/581 (62%), Positives = 421/581 (72%), Gaps = 11/581 (1%)
 Frame = -2

Query: 1863 MACLLPQFMCPSDTLSLHYRPTQH-----HNTHLKTKEPICFRGYCVSSSTTS-----LI 1714
            MACLLPQF C  DTLS+H++  QH     +N+ LK ++ +CFR  C+ S+TT+     ++
Sbjct: 1    MACLLPQFKCSPDTLSIHFKTHQHQHHYSNNSQLKARDLLCFRTQCILSTTTATMTTTVV 60

Query: 1713 DVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXX 1534
            D EKLR+PS++ H  SV A R LTY GA+ PP K  F ATLATE  +TG           
Sbjct: 61   DDEKLRMPSLEAHLISVPADRPLTYIGAIDPPTKAKFEATLATEPLITGDEALIAAAAVE 120

Query: 1533 XXXXXXXXXXXXKDAAVMPTTNTLKILDN-PESFTSKGDLLLIDSAKFTETEHVDTLGHF 1357
                        KDAA+M +TN     D  P    S+ D    ++A+  E E VD + H 
Sbjct: 121  AVALAKAAVEIAKDAALMVSTNPSSKSDKWPPDIPSELDTYWHETAQLNEIEQVDMVHHS 180

Query: 1356 ATTEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXX 1177
               E +P E         D++  D  D EL+LL+MQLS+SI  RSG              
Sbjct: 181  LGAESRPKE---------DSDYLDPTDEELKLLQMQLSKSIAVRSGRQTERRARRARAAE 231

Query: 1176 XXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXX 997
                     K GSS RKKR+++Q+VDYSDPLRYLRGTTST++LLT ++ELE S GIQ   
Sbjct: 232  KVAANVVAVKSGSSSRKKRSALQDVDYSDPLRYLRGTTSTSRLLTATEELEFSEGIQDLL 291

Query: 996  XXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAK 817
                      ER G QPT AQWAAAAG+D+KTLRK LN+GI CKDKMIKSNIRLVISIAK
Sbjct: 292  KLEKLYEELAERYGGQPTFAQWAAAAGIDQKTLRKRLNYGILCKDKMIKSNIRLVISIAK 351

Query: 816  NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 637
            NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL
Sbjct: 352  NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 411

Query: 636  PFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIG 457
            PFHMVEATYRV+EARKQLYS+NGR P++EE+AEATGLSMKRL AVLLTPK PRSLDQKIG
Sbjct: 412  PFHMVEATYRVREARKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIG 471

Query: 456  NDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKT 277
             + NLKPSEV ADPDAET E++LMK+FMK+DL+KVLD L+PRE QVIR RFGL+DGRMKT
Sbjct: 472  INQNLKPSEVIADPDAETTEELLMKKFMKQDLEKVLDSLNPREKQVIRWRFGLEDGRMKT 531

Query: 276  LQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 154
            LQEIGEL+GVSRER+RQIESCAFRKLKNKKRTK+L+QYLIS
Sbjct: 532  LQEIGELMGVSRERIRQIESCAFRKLKNKKRTKNLQQYLIS 572


>ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Nelumbo
            nucifera]
          Length = 584

 Score =  661 bits (1705), Expect = 0.0
 Identities = 353/583 (60%), Positives = 425/583 (72%), Gaps = 14/583 (2%)
 Frame = -2

Query: 1863 MACLLPQFMCPSDTLSLHYRP--TQHH------NTHLKTKEPICFRGYCVSSSTTS---- 1720
            MACLLPQF C  DT+S+H+R    QHH      N H K+++ + F+  CV S+TT+    
Sbjct: 1    MACLLPQFKCSPDTISIHFRTHQLQHHKHHHCNNNHSKSRDLLSFQTQCVLSTTTTAMTT 60

Query: 1719 -LIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXX 1543
             L+DVEKLR+PS++ HS SVA+ R L+Y GA  PP K SF ATLA E+ +TG        
Sbjct: 61   TLVDVEKLRMPSLESHSISVASDRPLSYIGATGPPTKASFEATLAMESLITGDEALIAAA 120

Query: 1542 XXXXXXXXXXXXXXXKDAAVMPTTNTLKILDN-PESFTSKGDLLLIDSAKFTETEHVDTL 1366
                           KDAA+M    +    +N P  F+S+  +  ++ A+ TET+ V  +
Sbjct: 121  AAEAVALAKEAVEVAKDAALMVNDKSSSESENGPSDFSSESHIFRLEKAQLTETQEVGRI 180

Query: 1365 GHFATTEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXX 1186
             H    E +  EE     S KD++  D  D E +LL+MQL +SI  RSG           
Sbjct: 181  DHSVGLESRQEEEQSVQFSNKDSDGLDSSDEEFKLLQMQLLKSIAVRSGRQTERQARRAR 240

Query: 1185 XXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQ 1006
                        K G S RK+RA++Q++DYSDPLRYLRGTTST++LLT ++ELELS GIQ
Sbjct: 241  AMEKASTNVLSVKSGHSSRKRRAALQDIDYSDPLRYLRGTTSTSRLLTATEELELSEGIQ 300

Query: 1005 XXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVIS 826
                         ERCG QPT AQWAAAAG+D+KTLRK LN+GI CKDKMIKSNIRLVIS
Sbjct: 301  DLLKLEKLHEELAERCGGQPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVIS 360

Query: 825  IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 646
            IAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT
Sbjct: 361  IAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 420

Query: 645  IRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQ 466
            IRLPFHMVEATYRV+EA+KQLYS+NGR P++EE+AEATGLSMKRL AVLLTPK P SLDQ
Sbjct: 421  IRLPFHMVEATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPISLDQ 480

Query: 465  KIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGR 286
            KIG + ++KPSE+ ADPDAETAE++L+KQFMK+DL+KVLD L+PRE QVIR RFG++DGR
Sbjct: 481  KIGMNQDMKPSEIIADPDAETAEELLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGR 540

Query: 285  MKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLI 157
            MKTLQEIGEL+GVSRER+RQIESCAFRKLKNK+RTK+L+QY+I
Sbjct: 541  MKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKNLQQYVI 583


>gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 578

 Score =  653 bits (1684), Expect = 0.0
 Identities = 349/578 (60%), Positives = 412/578 (71%), Gaps = 7/578 (1%)
 Frame = -2

Query: 1863 MACLLPQFMCPSDTLSLHYRPTQHHNTHLKTKEPICFRGYCV-------SSSTTSLIDVE 1705
            M+CLLPQF C  DT S+ +R   HH+ H K KE ICFR  CV       S++TT+++DVE
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRA--HHSHHSKHKESICFRSQCVLSTTSSTSTATTAVLDVE 58

Query: 1704 KLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXX 1525
            KLRLPS + HS SV   R  TYTGA  PP + SFGATLATE  LT               
Sbjct: 59   KLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAEAVA 118

Query: 1524 XXXXXXXXXKDAAVMPTTNTLKILDNPESFTSKGDLLLIDSAKFTETEHVDTLGHFATTE 1345
                     KDAA+M   ++    +     +S  D L      FTE E    +G + + E
Sbjct: 119  LARAAAKVAKDAAIMVKNHSSAKTEMKSPGSSATDTLTSKWGLFTEAERAGIVGDYVSDE 178

Query: 1344 FQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXX 1165
             +  E++   +S K++++ +  + EL+LL  QLS SI  RS                   
Sbjct: 179  LEMEEDDFEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSNRQPERKAKRTRAAEKAAT 238

Query: 1164 XXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXX 985
                 K GS+ RK+R ++Q++DYSDPLRYLRGTT+T+KLLT ++ELELS GIQ       
Sbjct: 239  NVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQDLLKLEV 298

Query: 984  XXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQG 805
                  ERCG  PT AQWAAAA +DRKTLR+ LN+G  CKDKMIKSNIRLVISIAKNYQG
Sbjct: 299  LHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICKDKMIKSNIRLVISIAKNYQG 358

Query: 804  AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 625
            AGMNLQDLVQEGCRGL+RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM
Sbjct: 359  AGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 418

Query: 624  VEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLN 445
            VEATYRVKEARKQLYS+NGR P++ E+AEATGLSMKRL AVLL PK PRSLDQKIG + N
Sbjct: 419  VEATYRVKEARKQLYSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGINQN 478

Query: 444  LKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEI 265
            LKPSEV ADP+A++AED+L+KQFMK+DL+KVLD LSPRE QVIR RFG++DGRMKTLQEI
Sbjct: 479  LKPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFGMEDGRMKTLQEI 538

Query: 264  GELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLISY 151
            GE +GVSRER+RQIE CAFRKLKNK+RTKHL+QYL+SY
Sbjct: 539  GESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLSY 576


>ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB [Gossypium raimondii]
            gi|763778947|gb|KJB46070.1| hypothetical protein
            B456_007G347300 [Gossypium raimondii]
          Length = 578

 Score =  645 bits (1664), Expect = 0.0
 Identities = 346/578 (59%), Positives = 410/578 (70%), Gaps = 7/578 (1%)
 Frame = -2

Query: 1863 MACLLPQFMCPSDTLSLHYRPTQHHNTHLKTKEPICFRGYCV-------SSSTTSLIDVE 1705
            M+CLLPQF C  DT S+ +R   HH+ H K KE ICFR  CV       S +TT+++DVE
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRA--HHSHHSKHKESICFRSQCVLSTTSSTSMATTAVLDVE 58

Query: 1704 KLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXX 1525
            KLRLPS + HS SV   R  TYTGA  PP + SFGATLATE  LT               
Sbjct: 59   KLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAEAVA 118

Query: 1524 XXXXXXXXXKDAAVMPTTNTLKILDNPESFTSKGDLLLIDSAKFTETEHVDTLGHFATTE 1345
                     KDAA+M   +     +     +S  D L      FTE E    +G + + E
Sbjct: 119  LARAAAKVAKDAAIMVKNHGSAKTEMKSPGSSATDTLTSKWGLFTEAERAGIVGDYVSDE 178

Query: 1344 FQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXX 1165
             +  E+++  +S K++++ +  + EL+LL  QLS SI  RS                   
Sbjct: 179  LELEEDHLEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSHRQTERKAKRTRAAEKAAT 238

Query: 1164 XXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXX 985
                 K GS+ RK+R ++Q++DYSDPLRYLRGTT+T+KLLT ++ELELS GIQ       
Sbjct: 239  NVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQDLLKLEG 298

Query: 984  XXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQG 805
                  ERCG  PT AQWAAAA +DRKTLR+ LN+G  C DKMIKSNIRLVISIAKNYQG
Sbjct: 299  LHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICMDKMIKSNIRLVISIAKNYQG 358

Query: 804  AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 625
            AGMNLQDLVQEGCRGL+RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM
Sbjct: 359  AGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 418

Query: 624  VEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLN 445
            VEATYRVKEARKQL+S+NGR P++ E+AEATGLSMKRL AVLL PK PRSLDQKIG + N
Sbjct: 419  VEATYRVKEARKQLFSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGINQN 478

Query: 444  LKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEI 265
            LKPSEV ADP+A++AED+L+KQFMK+DL+KVLD LSPRE QVIR RFG++DGR+KTLQEI
Sbjct: 479  LKPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFGMEDGRVKTLQEI 538

Query: 264  GELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLISY 151
            GE +GVSRER+RQIE CAFRKLKNK+RTKHL+QYL+SY
Sbjct: 539  GESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLSY 576


>ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB [Vitis vinifera]
            gi|296090195|emb|CBI40014.3| unnamed protein product
            [Vitis vinifera]
          Length = 575

 Score =  643 bits (1658), Expect = 0.0
 Identities = 353/579 (60%), Positives = 411/579 (70%), Gaps = 9/579 (1%)
 Frame = -2

Query: 1863 MACLLPQFMCPSDTLSLHYRPTQHHNTHLKTKEPICFRGYC--------VSSSTTSLIDV 1708
            M+CLLPQF CP DT S H  P  H  +  K +E I FR  C        +S+STT+++D+
Sbjct: 1    MSCLLPQFKCPPDTFSTH--PKLHILS--KNREAIYFRVQCALSTTSPPLSTSTTAVLDI 56

Query: 1707 EKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXX 1528
            EKLRLPS++ HS SVAA R  TY G + PP + +F ATLA ET LT              
Sbjct: 57   EKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAV 116

Query: 1527 XXXXXXXXXXKDAA-VMPTTNTLKILDNPESFTSKGDLLLIDSAKFTETEHVDTLGHFAT 1351
                      KDAA ++   N+ K    P SF S  D       +FTETE +  LG    
Sbjct: 117  ALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDSVG 176

Query: 1350 TEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXX 1171
             E    + N      +D++D +    ELELL  + S+SI  RS                 
Sbjct: 177  AETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEKA 236

Query: 1170 XXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXX 991
                   + GS+ R+KR S+QEVDYSDPLRYLRGTTST++LLT ++ELELS GIQ     
Sbjct: 237  SAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKL 296

Query: 990  XXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNY 811
                    ER G +PT AQWAAAAG+D+KTLR+  N+GIRCKDKMIKSNIRLVISIAKNY
Sbjct: 297  EKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNY 356

Query: 810  QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 631
            QGAGMN+QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
Sbjct: 357  QGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 416

Query: 630  HMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGND 451
            HMVEATYRVKEARKQLYS+NGR PN+EE+AEATGLSMKRL AVLLTPK PRSLDQKIG +
Sbjct: 417  HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGIN 476

Query: 450  LNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQ 271
             NLKPSEV ADPDAETAE++L+KQFM+EDL+KVL+ L+PRE QVIR R+GL+DGR KTLQ
Sbjct: 477  QNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQ 536

Query: 270  EIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 154
            EIGEL+GVSRER+RQIESCAFRKLKNK+RTKHL+QYL+S
Sbjct: 537  EIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575


>ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
            gi|802585247|ref|XP_012070323.1| PREDICTED: RNA
            polymerase sigma factor sigB [Jatropha curcas]
            gi|643732514|gb|KDP39610.1| hypothetical protein
            JCGZ_02630 [Jatropha curcas]
          Length = 577

 Score =  641 bits (1654), Expect = 0.0
 Identities = 348/579 (60%), Positives = 412/579 (71%), Gaps = 9/579 (1%)
 Frame = -2

Query: 1863 MACLLPQFMCPSDTLSLHYRPTQHHNTHL----KTKEPICFRGYCVSSST-----TSLID 1711
            M+CLLPQF C  DT S+H+R     N++     K++EP+CFR  C+ S+T     T+++D
Sbjct: 1    MSCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTAVLD 60

Query: 1710 VEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXX 1531
            +EKLRLPS + H  S+ A    TY G++ PP K +FG+TLATET +TG            
Sbjct: 61   LEKLRLPSFEAHPDSLVANSPWTYVGSIGPP-KETFGSTLATETLITGDDAVIAAAAAEA 119

Query: 1530 XXXXXXXXXXXKDAAVMPTTNTLKILDNPESFTSKGDLLLIDSAKFTETEHVDTLGHFAT 1351
                       KDAA++  +      ++     S  D+      +FTET+    +G   T
Sbjct: 120  VALARAAAKVAKDAAILVKSFPSSEAESKLEIPSIADVSS-RWPQFTETDRARIIGDSVT 178

Query: 1350 TEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXX 1171
             E    EE+      K+++  +    ELELL+ QLSE I  RS                 
Sbjct: 179  AETGSREEHPMQHPTKESDHLEPTHEELELLQKQLSEGIAVRSRRQTERKERRTRAAEKA 238

Query: 1170 XXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXX 991
                   K GS+ +KKR  +QEVDYSDPLRYLRGTTST+KLLT ++ELELS GIQ     
Sbjct: 239  AANVMSWKSGSTSKKKRGPLQEVDYSDPLRYLRGTTSTSKLLTATEELELSEGIQDLLKL 298

Query: 990  XXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNY 811
                    ERCG QPT  QWAAAAG+D+KTLR  LN+GI CKD+MIKSNIRLVISIAKNY
Sbjct: 299  ERLHEELAERCGGQPTFQQWAAAAGVDQKTLRTRLNYGISCKDRMIKSNIRLVISIAKNY 358

Query: 810  QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 631
            QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
Sbjct: 359  QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 418

Query: 630  HMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGND 451
            HMVEATYRVKEARKQLYS+NGR P+DEE+AEATGLSMKRL AVLLTPK PRSLDQKIG +
Sbjct: 419  HMVEATYRVKEARKQLYSENGRYPDDEEVAEATGLSMKRLSAVLLTPKAPRSLDQKIGIN 478

Query: 450  LNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQ 271
            ++LKPSE+ ADPDAETAED+LMKQFMK+DL+KVLD LSPRENQVIR RFGL+DGR+KTLQ
Sbjct: 479  MDLKPSEIIADPDAETAEDLLMKQFMKQDLEKVLDSLSPRENQVIRWRFGLEDGRIKTLQ 538

Query: 270  EIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 154
            EIGE++GVSRER+RQIES AFRKLK KKRTK L+QYL++
Sbjct: 539  EIGEIMGVSRERIRQIESSAFRKLKKKKRTKQLKQYLVA 577


>gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sinensis]
          Length = 605

 Score =  637 bits (1643), Expect = e-179
 Identities = 350/589 (59%), Positives = 414/589 (70%), Gaps = 12/589 (2%)
 Frame = -2

Query: 1884 TVIYTTHMACLLPQFMCPSDTLSLHYRPT---QHHNTH-LKTKEPICFRGYCVSSST--- 1726
            T  +  +M+CLLPQF C  DT S+H+R     QHH++H  K+KEPICFR +CV S+T   
Sbjct: 17   TSSFNKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPS 76

Query: 1725 -----TSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXX 1561
                 T+++DVEKLRLPS++ HS +VAA R  TY GA+ P  + + G +LATET LT   
Sbjct: 77   TSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATET-LTSDE 135

Query: 1560 XXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKILDNPESFTSKGDLLLIDSAKFTETE 1381
                                 KDAA+M   +      +  + +S  D      A+ TE E
Sbjct: 136  AVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERE 195

Query: 1380 HVDTLGHFATTEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXX 1201
                +G     E  P EE      +  + D +    EL+LL  Q+S+SI  RS       
Sbjct: 196  RASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERK 255

Query: 1200 XXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELEL 1021
                             K GS+ R+KR S+QEVDYSDPLRYLR TTS+++LLT ++E++L
Sbjct: 256  ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQL 315

Query: 1020 SAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNI 841
            SAGIQ             ERCG  PT AQWAAAAG+D++ LR+ LN+GI CKDKMI SNI
Sbjct: 316  SAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNI 375

Query: 840  RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 661
            RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 376  RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 435

Query: 660  DQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPP 481
            DQSRTIRLPFHMVEATYRVKEARKQLYS+NGR PN+EE+AEATGLSMKRL AVLL+PK P
Sbjct: 436  DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAP 495

Query: 480  RSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFG 301
            RSLDQKIG + NLKPSEV ADP+AETAED+L+K+FMKEDL+KVLD L+PRE QV+R RFG
Sbjct: 496  RSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFG 555

Query: 300  LDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 154
            L+DGRMKTLQEIGEL+GVSRER+RQIES AFRKLKNKKRTKHL QY I+
Sbjct: 556  LEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
            sinensis]
          Length = 605

 Score =  635 bits (1637), Expect = e-179
 Identities = 349/589 (59%), Positives = 412/589 (69%), Gaps = 12/589 (2%)
 Frame = -2

Query: 1884 TVIYTTHMACLLPQFMCPSDTLSLHYRPT---QHHNTH-LKTKEPICFRGYCVSSST--- 1726
            T  +  +M+CLLPQF C  DT S+H+R     QHH++H  K+KEPICFR +CV S+T   
Sbjct: 17   TSSFNKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPS 76

Query: 1725 -----TSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXX 1561
                 T+++DVEKLRLPS++ HS +VAA R  TY GA+ P  + + G +LATET LT   
Sbjct: 77   TSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATET-LTSDE 135

Query: 1560 XXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKILDNPESFTSKGDLLLIDSAKFTETE 1381
                                 KDAA+M   +      +  + +   D      A+ TE E
Sbjct: 136  AVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWAQLTERE 195

Query: 1380 HVDTLGHFATTEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXX 1201
                +G     E  P EE      +  + D +    EL+LL  Q+S+SI  RS       
Sbjct: 196  RASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERK 255

Query: 1200 XXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELEL 1021
                             K GS+ R+KR S+QEVDYSDPLRYLR TTS+++LLT ++E++L
Sbjct: 256  ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQL 315

Query: 1020 SAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNI 841
            SAGIQ             ERCG  PT AQWAAAAG+D++ LR+ LN+GI CKDKMI SNI
Sbjct: 316  SAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNI 375

Query: 840  RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 661
            RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 376  RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 435

Query: 660  DQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPP 481
            DQSRTIRLPFHMVEATYRVKEARKQLYS+NGR PN+EE+AEATGLSMKRL AVLLTPK P
Sbjct: 436  DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAP 495

Query: 480  RSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFG 301
            RSLDQK G + NLKPSEV ADP+AETAED+L+K+FMKEDL+KVLD L+PRE QV+R RFG
Sbjct: 496  RSLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFG 555

Query: 300  LDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 154
            L+DGRMKTLQEIGEL+GVSRER+RQIES AFRKLKNKKRTKHL QY I+
Sbjct: 556  LEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
            gi|557539534|gb|ESR50578.1| hypothetical protein
            CICLE_v10030998mg [Citrus clementina]
          Length = 605

 Score =  632 bits (1629), Expect = e-178
 Identities = 350/596 (58%), Positives = 416/596 (69%), Gaps = 16/596 (2%)
 Frame = -2

Query: 1893 IEETVIYTT----HMACLLPQFMCPSDTLSLHYRPT---QHHNTH-LKTKEPICFRGYCV 1738
            ++ET I T+    +M+CLLPQF C  DT S+H+R     QHH++H  K+KEPICFR +CV
Sbjct: 10   VKETQISTSSFNKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCV 69

Query: 1737 SSST--------TSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATE 1582
             S+T        T+++DVEKLRLPS++ HS +VAA R  TY GA+ P  + + G +LATE
Sbjct: 70   LSTTSPSTSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATE 129

Query: 1581 TFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKILDNPESFTSKGDLLLIDS 1402
            T LT                        KDAA+M   +      +  + +   D      
Sbjct: 130  T-LTSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTSTSMW 188

Query: 1401 AKFTETEHVDTLGHFATTEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARS 1222
            A+ TE E    +G     E  P EE      +  + D +    EL+LL  Q+S+SI  RS
Sbjct: 189  AQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRS 248

Query: 1221 GXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLT 1042
                                    K GS+ R+KR S+QEVDYSDPLRYLR TTS+++LLT
Sbjct: 249  RRQTERKARRTRAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 308

Query: 1041 YSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKD 862
             ++E++LSAGIQ             ERCG  PT AQWAAAAG+D++ LR+ LN+GI CKD
Sbjct: 309  ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 368

Query: 861  KMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 682
            KMI SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ
Sbjct: 369  KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428

Query: 681  AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAV 502
            AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS+NGR PN+EE+A+ATGLSMKRL AV
Sbjct: 429  AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKRLHAV 488

Query: 501  LLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQ 322
            LL PK PRSLDQK G + NLKPSEV ADP+AETAED+L+K+FMKEDL+KVLD L+PRE Q
Sbjct: 489  LLAPKAPRSLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQ 548

Query: 321  VIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 154
            V+R RFGL+DGRMKTLQEIGEL+GVSRER+RQIES AFRKLKNKKRTKHL QY I+
Sbjct: 549  VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_008240611.1| PREDICTED: RNA polymerase sigma factor sigB [Prunus mume]
          Length = 643

 Score =  631 bits (1628), Expect = e-178
 Identities = 339/549 (61%), Positives = 402/549 (73%), Gaps = 8/549 (1%)
 Frame = -2

Query: 1776 KTKEPICFRGYCV--------SSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAP 1621
            K+++P+CFR   +        S+ TT+++DVEKLRLPS++ +S S+AA R  TYTGA  P
Sbjct: 95   KSRDPLCFRAQSILSTASRSTSTGTTTVLDVEKLRLPSLEVNSDSLAANRPWTYTGATGP 154

Query: 1620 PLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKILDNPE 1441
            P++ +FGATLATE  LT                        KD A++ +TN     ++  
Sbjct: 155  PIEANFGATLATENLLTSEEAVIAAAAAEAVTLAKAALKVAKDVALLVSTNHSAKAESSS 214

Query: 1440 SFTSKGDLLLIDSAKFTETEHVDTLGHFATTEFQPGEENVPGSSIKDAEDSDERDNELEL 1261
              + K + L    AK  ET+    LG    +E    E +    +IK++ED +  + E EL
Sbjct: 215  PVSPKTNALHFKWAKHMETKQPSRLGASMGSETALVENHFIQLAIKESEDVESTNQEFEL 274

Query: 1260 LRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLR 1081
            L+ QLSE ITARS                        K GS+ RKKRAS+Q+VD+SDPLR
Sbjct: 275  LQEQLSEGITARSSRQIERKARRAKAAEKAAASVVSVKSGSTSRKKRASLQDVDHSDPLR 334

Query: 1080 YLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKT 901
            YLR TT T++LLT ++E+ELS GIQ             +RCG QPTIAQWAAAAG+D+KT
Sbjct: 335  YLRATTHTSRLLTANEEIELSEGIQELLKLEKLQEELVQRCGGQPTIAQWAAAAGVDQKT 394

Query: 900  LRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 721
            LRK +N+GI CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ+GCRGLVRGAEKFDASKG
Sbjct: 395  LRKRINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQQGCRGLVRGAEKFDASKG 454

Query: 720  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIA 541
            FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV+EA+KQLYS NGR PNDEE+A
Sbjct: 455  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVA 514

Query: 540  EATGLSMKRLMAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDL 361
            EATGLSMKRL AVLLTPK PRSL+QKIG + NLKPSEV ADPDAETAEDMLMK+FMK+DL
Sbjct: 515  EATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETAEDMLMKKFMKQDL 574

Query: 360  DKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRT 181
            +KVLD L+ RE QV+R RFGL+DGRMKTLQEIGEL+GVSRER+RQIESCAFRKLKNKKRT
Sbjct: 575  EKVLDSLNAREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRT 634

Query: 180  KHLEQYLIS 154
            KHL+QY++S
Sbjct: 635  KHLQQYVVS 643


>ref|XP_008805674.1| PREDICTED: RNA polymerase sigma factor sigB-like [Phoenix
            dactylifera]
          Length = 566

 Score =  630 bits (1625), Expect = e-177
 Identities = 338/571 (59%), Positives = 410/571 (71%), Gaps = 1/571 (0%)
 Frame = -2

Query: 1863 MACLLPQFMCPSDTLSLHYRPTQHH-NTHLKTKEPICFRGYCVSSSTTSLIDVEKLRLPS 1687
            MACL+PQF CPS +   H+RP  HH + + K ++ +CFR  CVS+ T ++ID++  R+PS
Sbjct: 1    MACLVPQFKCPSISPDAHFRPLSHHPSLNSKARDSVCFRSPCVSTLTAAVIDIQ--RIPS 58

Query: 1686 IDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXX 1507
            ++ HSTS+ A R LTY GA+ PP+KTS  ATLATET LTG                    
Sbjct: 59   LEAHSTSLDATRPLTYVGAVGPPMKTSIEATLATETLLTGEEAVIAAAAAEAVALARAAV 118

Query: 1506 XXXKDAAVMPTTNTLKILDNPESFTSKGDLLLIDSAKFTETEHVDTLGHFATTEFQPGEE 1327
               KDAA +   +    L+  E F+S+ D   ++  + TE E + T  +   T+ +P E 
Sbjct: 119  EVAKDAAQIIGNDPSVKLEKSEDFSSEADAFRLERVRLTEMELIRTTNNSTPTDTEPHEA 178

Query: 1326 NVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXK 1147
              P       + S+    ELE  +MQ  ESI  RSG                       K
Sbjct: 179  KDPSQG---TDVSNLTHKELESQQMQYPESIAVRSGRQTDRKARRTRAAEKAAVSVIPVK 235

Query: 1146 PGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXX 967
             GS+ +KKR++ QEVDYSDPLRYLRGTTST+KLLT ++ELELS  IQ             
Sbjct: 236  SGSTSKKKRSTFQEVDYSDPLRYLRGTTSTSKLLTAAEELELSEAIQDMLKLERLQQELA 295

Query: 966  ERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQ 787
            ER G QPT AQWAAAAG+D++TLRK LN+G  CKDKMIKSNIRLVISIAKNYQGAGMNLQ
Sbjct: 296  ERHGGQPTFAQWAAAAGVDQRTLRKRLNYGRFCKDKMIKSNIRLVISIAKNYQGAGMNLQ 355

Query: 786  DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 607
            DLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVR+SLS+QSRTIRLPFHMVEATYR
Sbjct: 356  DLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRRSLSEQSRTIRLPFHMVEATYR 415

Query: 606  VKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLNLKPSEV 427
            V+EA+KQLYS+NGR P+ +E+AEATGLSMKRL AV+LTPK PRSLDQKIG + +LKPSEV
Sbjct: 416  VREAKKQLYSENGRYPDYQEVAEATGLSMKRLNAVMLTPKAPRSLDQKIGINQSLKPSEV 475

Query: 426  TADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGV 247
             ADP+AET+E++L+KQF K+DL+KVLD L+PRE QV+R RFGL+DG  KTLQEIGEL+GV
Sbjct: 476  IADPEAETSEEILIKQFRKQDLNKVLDTLNPREKQVVRWRFGLEDGMTKTLQEIGELMGV 535

Query: 246  SRERVRQIESCAFRKLKNKKRTKHLEQYLIS 154
            SRER+RQIES AFRKLKNKKRT+HL+QY+IS
Sbjct: 536  SRERIRQIESSAFRKLKNKKRTRHLQQYVIS 566


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  628 bits (1619), Expect = e-177
 Identities = 349/586 (59%), Positives = 415/586 (70%), Gaps = 16/586 (2%)
 Frame = -2

Query: 1863 MACLLPQFMCPSDTLSLHYRPTQHHNTHL----KTKEPICFRGYCVSSST-----TSLID 1711
            M+CLLPQF C  DT S+H+R    H +++    K++EPI +R  C+ S+T     T+++D
Sbjct: 2    MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTAVLD 61

Query: 1710 VEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXX 1531
            +EKLRLPS +  S S+A     TY          +FG+TLATET +T             
Sbjct: 62   LEKLRLPSFEAPSDSIAPNSPWTYA---------TFGSTLATETLITSDEAVIAAAAAEA 112

Query: 1530 XXXXXXXXXXXKDAAVM----PTTNTLKILDNPESFTSKGDLLLIDSAK---FTETEHVD 1372
                       KDAA++    P+  T   L +P +         ID+++   FTETE   
Sbjct: 113  VALARAAVKVAKDAALLVKNFPSAETESKLTSPST---------IDASRWPQFTETERAR 163

Query: 1371 TLGHFATTEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXX 1192
             +G    TE  P EE+   SSIK+++  +    ELELL+ QLSE I  RS          
Sbjct: 164  IIGDSVATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARR 223

Query: 1191 XXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAG 1012
                          KPGS+ +KKR S+QEVDYSDPLRYLRGTTST++LLT S+ELELSA 
Sbjct: 224  ARAVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAA 283

Query: 1011 IQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLV 832
            IQ             ER G QPT AQWAAAAG+D++TLRK +NHG  CKDKMIKSNIRLV
Sbjct: 284  IQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLV 343

Query: 831  ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 652
            ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS
Sbjct: 344  ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 403

Query: 651  RTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSL 472
            RTIRLPFHMVEATYRVKEARKQLYS+NGR P+DEE+AEA GLSMKRL AVLLTPK PRSL
Sbjct: 404  RTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSL 463

Query: 471  DQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDD 292
            DQKIG +++LKPSEV ADP+AETAE++LMKQFMK+DL+KVL+ L+PRE QV+R RFGL+D
Sbjct: 464  DQKIGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLED 523

Query: 291  GRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 154
            GRMKTLQEIGE++GVSRER+RQIES AFRKLKNKKRTK L+QYL++
Sbjct: 524  GRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569


>ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
            gi|508718473|gb|EOY10370.1| RNApolymerase sigma subunit 2
            [Theobroma cacao]
          Length = 623

 Score =  627 bits (1618), Expect = e-177
 Identities = 354/623 (56%), Positives = 408/623 (65%), Gaps = 52/623 (8%)
 Frame = -2

Query: 1863 MACLLPQFMCPSDTLSLHYRPTQHHNTHL------------------------------- 1777
            M+CLLPQF C  DT S+ +R   HH+ H                                
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRT--HHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLI 58

Query: 1776 -----KTKEPICFRGYCVSSST--------TSLIDVEKLRLPSIDDHSTSVAAVRSLTYT 1636
                 K KE ICFR  CV S+T        T+++DVEKLRLPS + H  SVA  R  TY 
Sbjct: 59   FVVLAKHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYI 118

Query: 1635 GALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKI 1456
            GA  PP + S GATLAT+  LT                        KDAA+M        
Sbjct: 119  GATGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAK 178

Query: 1455 LDNPESFTSKGDLLLIDSAKFTETEHVDTLGHFATTEFQPGEENVPGSSIKDAEDSDERD 1276
             +     +   D      A FTE E    +G   T E +  E++   +S  ++++ +  +
Sbjct: 179  TEMKSGVSFATDSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTN 238

Query: 1275 NELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDY 1096
             ELE L  QLS SI  RS                        K GS+ RK+R ++Q+VDY
Sbjct: 239  EELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDY 298

Query: 1095 SDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAG 916
            SDPLRYLRGTTST++LLT ++ELELS GIQ             ERCG QPT AQWAAAAG
Sbjct: 299  SDPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAG 358

Query: 915  LDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 736
            +D+KTLR  LN+G+ CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF
Sbjct: 359  VDQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 418

Query: 735  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPN 556
            DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS+NGR P+
Sbjct: 419  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPD 478

Query: 555  DEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLNLKPS--------EVTADPDAETA 400
            +EE+AEATGLSMKRL AVLLTPK PRSLDQKIG + NLKPS        EV ADP+AETA
Sbjct: 479  NEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAETA 538

Query: 399  EDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIE 220
            EDML+KQFM++DL+KVLD LS RE QVIR RFG++DGRMKTLQEIGEL+GVSRER+RQIE
Sbjct: 539  EDMLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIE 598

Query: 219  SCAFRKLKNKKRTKHLEQYLISY 151
            SCAFRKLKNKKRTKHL+QYL+SY
Sbjct: 599  SCAFRKLKNKKRTKHLQQYLLSY 621


>ref|XP_009377635.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Pyrus x
            bretschneideri]
          Length = 643

 Score =  618 bits (1593), Expect = e-174
 Identities = 334/559 (59%), Positives = 408/559 (72%), Gaps = 11/559 (1%)
 Frame = -2

Query: 1797 QHHNTHLKTKEPICFRG--------YCVSSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLT 1642
            +H +   KT++P+CFR         +  S++TT+++D+E+LRLPS++ +S S+A+ R  T
Sbjct: 86   KHSSFQAKTRDPLCFRAQYILSTTSHSTSTATTTVLDLERLRLPSLEVNSDSLASSRPWT 145

Query: 1641 YTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTL 1462
            YTGA+ P  + +FGATLATET LT                        KD A++ +++T 
Sbjct: 146  YTGAIGPLTEANFGATLATETLLTSEEAVIEAAAAEAVTLAKAALKVAKDVAMLVSSSTN 205

Query: 1461 KILDNPES---FTSKGDLLLIDSAKFTETEHVDTLGHFATTEFQPGEENVPGSSIKDAED 1291
                 PES    + +   L  + A+  ETE V  +G     E    E++   S+IK+ E+
Sbjct: 206  HSA-KPESSSPVSPETKALHFNWAQHMETEQVSRVGASMGAETAFVEDHFIQSAIKELEE 264

Query: 1290 SDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASI 1111
             ++   E ELL+ QLS+ ITA+S                        K GS+ RKKR+S+
Sbjct: 265  VEQTYEEFELLQEQLSKGITAKSSRQTERKARRAKAAEKAAASVVSVKSGSATRKKRSSV 324

Query: 1110 QEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQW 931
            QE+D+SDPLRYLR TT T++LLT ++E+E S GIQ             +RCG QPTIAQW
Sbjct: 325  QEIDHSDPLRYLRSTTHTSRLLTANEEIEFSEGIQELLKLEKLHEELAQRCGGQPTIAQW 384

Query: 930  AAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 751
            AAAAG+D+KTLRK +N+GI CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR
Sbjct: 385  AAAAGVDQKTLRKRVNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 444

Query: 750  GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKN 571
            GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV+EA+KQLYS N
Sbjct: 445  GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSLN 504

Query: 570  GRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDM 391
            GR PNDEE+AEATGLSMKRL AVLLTPK PRSL+QKIG + NLKPSEV +DPDAETAED+
Sbjct: 505  GRHPNDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEDL 564

Query: 390  LMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCA 211
            LMK+FMK+DL+KVLD L+ RE QV+R RFGL+DGRMKTLQEIGEL+GVSRER+RQIESCA
Sbjct: 565  LMKKFMKQDLEKVLDSLNTREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCA 624

Query: 210  FRKLKNKKRTKHLEQYLIS 154
            FRKLKNKKRTKHL+QY++S
Sbjct: 625  FRKLKNKKRTKHLQQYVVS 643


>ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Eucalyptus
            grandis] gi|629111779|gb|KCW76739.1| hypothetical protein
            EUGRSUZ_D01094 [Eucalyptus grandis]
          Length = 588

 Score =  617 bits (1592), Expect = e-174
 Identities = 340/580 (58%), Positives = 404/580 (69%), Gaps = 11/580 (1%)
 Frame = -2

Query: 1860 ACLLPQFMCPSDTLSLHYRPTQHHNTHL-KTKEPICFRGYCV----------SSSTTSLI 1714
            +CLLPQF C  DT S+ +R      TH  K +E   FR  C+          S++T  ++
Sbjct: 15   SCLLPQFKCQPDTFSIQFR------THAQKNRETTYFRAQCLLSATSPSTLSSAATAVVL 68

Query: 1713 DVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXX 1534
            D+EKLRLPS++  + S  + R  TYTGA+ PP + + GATLATET LT            
Sbjct: 69   DMEKLRLPSLEVLTDSPTSNRPWTYTGAVGPPAEVNLGATLATETLLTSDEAVIAAAASE 128

Query: 1533 XXXXXXXXXXXXKDAAVMPTTNTLKILDNPESFTSKGDLLLIDSAKFTETEHVDTLGHFA 1354
                        K AA+M    +   +DN    +S+    L   A+  E EH + L    
Sbjct: 129  AVTLAKAALKSAKHAALMIRNESSSNIDNKLELSSRTSTSLSKHAELLELEHSNILTELM 188

Query: 1353 TTEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXX 1174
              E    E NV   S   +ED +    EL+LL++QL +SI  RS                
Sbjct: 189  EPEGGLREGNVMQYSTDKSEDLEPTHEELQLLQVQLFKSIAVRSRRQTERKEIRERAAEK 248

Query: 1173 XXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXX 994
                    K GS  +KKRA++QEVDYSDPLRYLRGTTS+++LLT ++E ELS GIQ    
Sbjct: 249  AAANVVSVKSGSLSKKKRAALQEVDYSDPLRYLRGTTSSSRLLTATEETELSEGIQDLLK 308

Query: 993  XXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKN 814
                     ERCG +P  AQWAAAAG+D+KTLRK LN+G  CKDKMIKSNIRLVISIAKN
Sbjct: 309  LERLQVELTERCGGEPAFAQWAAAAGVDQKTLRKRLNYGRLCKDKMIKSNIRLVISIAKN 368

Query: 813  YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 634
            YQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP
Sbjct: 369  YQGAGMNLQDLVQEGCRGLVRGCEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 428

Query: 633  FHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGN 454
            FHMVEATYRVKEARKQLYS+NGR P++EE+AEATGLSMKRL AVL+TPK PRSLDQKIG 
Sbjct: 429  FHMVEATYRVKEARKQLYSENGRQPDNEEVAEATGLSMKRLNAVLMTPKAPRSLDQKIGI 488

Query: 453  DLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTL 274
            + NLKPSEV ADP+AET+ED+L+KQFM++DL+KVLD L+PRE QV+R RFGL+DGRMKTL
Sbjct: 489  NQNLKPSEVIADPNAETSEDVLLKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTL 548

Query: 273  QEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 154
            QEIGEL+GVSRER+RQIESCAFRKLKNKKRTKHL+QY+++
Sbjct: 549  QEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLA 588


>ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus notabilis]
            gi|587881690|gb|EXB70625.1| RNA polymerase sigma factor
            rpoD [Morus notabilis]
          Length = 574

 Score =  617 bits (1590), Expect = e-173
 Identities = 341/582 (58%), Positives = 397/582 (68%), Gaps = 12/582 (2%)
 Frame = -2

Query: 1863 MACLLPQFMCPSDTLSLHYRPTQHH----NTHLKTKEPICFRGYCVSSST--------TS 1720
            M+CLLPQF C  DT S  +    H     N+HL     I     CV S+T        T 
Sbjct: 1    MSCLLPQFNCKPDTFSAQFNFRTHSLPTPNSHLPKARDINSLAQCVLSTTSPSTSVGATY 60

Query: 1719 LIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXX 1540
            ++ VEKLR PS+D +S SV + R  TYTGA  PP++ +F ATLATET LT          
Sbjct: 61   VLSVEKLRFPSLDANSESVTSNRPWTYTGATGPPVEANFEATLATETLLTSEEAVIAAAA 120

Query: 1539 XXXXXXXXXXXXXXKDAAVMPTTNTLKILDNPESFTSKGDLLLIDSAKFTETEHVDTLGH 1360
                          KDAA         +L  P +      L+  ++      +    +  
Sbjct: 121  AEAVTLAKAAVKVAKDAA---------LLVRPSTRAESISLVSSEARNIKTAQAASRVRD 171

Query: 1359 FATTEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXX 1180
                E    E++ P  + K++ D    + EL +L+ QLS+SI  RS              
Sbjct: 172  SLRAEMALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKRDRAA 231

Query: 1179 XXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXX 1000
                      K GS+ RKKRAS+Q+VD+SDPLRYLR TTST++LLT ++E+ELS GIQ  
Sbjct: 232  EKAAANVVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDL 291

Query: 999  XXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIA 820
                       ERCG  PT AQWAAAAG+D+KTLR+ +N+GI CKDKMIKSN+RLVISIA
Sbjct: 292  LKLEKLQEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLVISIA 351

Query: 819  KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 640
            KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 352  KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 411

Query: 639  LPFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKI 460
            LPFHMVEATYRVKEARKQLYS+NGR PNDEE+AEATGLSMKRL AVLLTPK PRSL+QKI
Sbjct: 412  LPFHMVEATYRVKEARKQLYSENGRQPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKI 471

Query: 459  GNDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMK 280
            G + NLKPSE+ ADPDAET ED+L +QFMK+DLDKVLD L+ RE QVIR RFG+DDGRMK
Sbjct: 472  GINQNLKPSEIIADPDAETLEDVLTRQFMKQDLDKVLDSLNQREKQVIRWRFGMDDGRMK 531

Query: 279  TLQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 154
            TLQEIGEL+GVSRER+RQIESCAFRKLKNKKRTKHL+QYLIS
Sbjct: 532  TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 573


>ref|XP_008392513.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Malus
            domestica]
          Length = 638

 Score =  615 bits (1585), Expect = e-173
 Identities = 332/549 (60%), Positives = 403/549 (73%), Gaps = 8/549 (1%)
 Frame = -2

Query: 1776 KTKEPICFRGYCV--------SSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAP 1621
            KT++P+CFR   +        S++TT+++D+EKLRLPS++ +S S+A+ R  TYTGA+ P
Sbjct: 91   KTRDPLCFRAQYILSTTPRSTSTATTTVLDMEKLRLPSLEFNSDSLASSRPWTYTGAIDP 150

Query: 1620 PLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKILDNPE 1441
            P + +FG+TLATET LT                        KD A++ +T      +   
Sbjct: 151  PTEANFGSTLATETLLTSEEAVIAAAAAEAVTLAKAALKVAKDVAMLVSTIHSAKPEISS 210

Query: 1440 SFTSKGDLLLIDSAKFTETEHVDTLGHFATTEFQPGEENVPGSSIKDAEDSDERDNELEL 1261
              + + + L  + A+  ETE V  +G     E    E++    + K++E+ +  + E EL
Sbjct: 211  PVSPETNALHFNWAQHIETEQV-RVGASMGAETAFLEDHFIQYAEKESEEVERTNEEFEL 269

Query: 1260 LRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLR 1081
            L+ QLS+ ITA+S                        K GS+ RKKR+S+QE+D+SDPLR
Sbjct: 270  LQEQLSKGITAKSSRQTERKARRSKAAEKAAASVVSVKSGSTTRKKRSSVQEIDHSDPLR 329

Query: 1080 YLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKT 901
            YLR TT T++LLT ++E+ELSAGIQ             +RCG QPTIAQWAAAAG+D+KT
Sbjct: 330  YLRSTTHTSRLLTANEEIELSAGIQELLKLEKLQEELTQRCGRQPTIAQWAAAAGVDQKT 389

Query: 900  LRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 721
            LRK +N GI CKDKMIKSNIRLVISIAKNYQG+GMNLQDLVQ+GCRGLVRGAEKFDASKG
Sbjct: 390  LRKRVNCGILCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQQGCRGLVRGAEKFDASKG 449

Query: 720  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIA 541
            FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA+KQLYS NGR PNDEE+A
Sbjct: 450  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYSLNGRHPNDEEVA 509

Query: 540  EATGLSMKRLMAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDL 361
            EATGLSMKRL AVLLTPK PRSLDQKIG +LN KPSEV +DPDAETAED+LMK+FMK+DL
Sbjct: 510  EATGLSMKRLSAVLLTPKAPRSLDQKIGINLNFKPSEVISDPDAETAEDLLMKKFMKQDL 569

Query: 360  DKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRT 181
            +KVLD L+PRE QV+R RFGL+DGRMKTLQEIGEL+GVSRER+RQIESCAFRKLKNKKRT
Sbjct: 570  EKVLDSLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRT 629

Query: 180  KHLEQYLIS 154
            KHL+QY +S
Sbjct: 630  KHLQQYAVS 638


>ref|XP_009398609.1| PREDICTED: RNA polymerase sigma factor sigB-like [Musa acuminata
            subsp. malaccensis]
          Length = 567

 Score =  612 bits (1577), Expect = e-172
 Identities = 339/573 (59%), Positives = 403/573 (70%), Gaps = 3/573 (0%)
 Frame = -2

Query: 1863 MACLLPQFMCPS-DTLSLHYRPTQHHNTHLKTKEPICFRGYCVSSSTTSLIDVEKLRLPS 1687
            MACL+PQF  PS D+L+    P+ H     + +E +CFR  CV S TT++ID E++  P 
Sbjct: 1    MACLVPQFKPPSSDSLARPSLPSLHP----RAREFVCFRSRCVLSPTTAVIDFEQI--PK 54

Query: 1686 IDDHSTS--VAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXX 1513
            ++ HSTS    A+R LTY+G++ PP+KTS  ATLA+ET L                    
Sbjct: 55   LEAHSTSSSTCAIRPLTYSGSVGPPIKTSIEATLASETLLQCDEAVIAAAAAEAVALARA 114

Query: 1512 XXXXXKDAAVMPTTNTLKILDNPESFTSKGDLLLIDSAKFTETEHVDTLGHFATTEFQPG 1333
                 KDAA M   N    ++  E   S+ D+  ++    TETE      H A TE  P 
Sbjct: 115  ALELAKDAAQMIGKNLSAEVEKLEETPSEADIKWLERVSLTETEWAGFTNHPAATETIPF 174

Query: 1332 EENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXX 1153
            E NV        + S    +E E   MQ  E+I  RSG                      
Sbjct: 175  EYNVSLDQYASTDISSSTFDEPEFQGMQHIENIAVRSGRQIERRARRARAADKATAGVIS 234

Query: 1152 XKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXX 973
             K GSSG+KKR++ QE+DYSDPLRYLRGTTST+KLLT ++E+ELS GIQ           
Sbjct: 235  LKSGSSGKKKRSAFQEIDYSDPLRYLRGTTSTSKLLTAAEEIELSEGIQSLLKLERLQQD 294

Query: 972  XXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMN 793
              ER GCQPT AQWAAAAG+D+KTLRK +NHG  CKDKMIKSNIRLVISIAKNYQGAG+N
Sbjct: 295  LAERNGCQPTFAQWAAAAGIDQKTLRKRINHGTYCKDKMIKSNIRLVISIAKNYQGAGIN 354

Query: 792  LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 613
            LQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLS+QSRTIRLPFHMVEAT
Sbjct: 355  LQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSEQSRTIRLPFHMVEAT 414

Query: 612  YRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLNLKPS 433
            YRV+EA+K+LYS+NGR P++EE+AEA GLSMKRL AV+LTPK PRSLDQKIG + +LK S
Sbjct: 415  YRVREAKKKLYSENGRHPDNEEVAEAAGLSMKRLAAVMLTPKAPRSLDQKIGINQSLKAS 474

Query: 432  EVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELI 253
            EV ADP A+T+ED+LMKQFM+EDL+KVLD L+ RE QV+R RFGLDDGRMKTLQEIGEL+
Sbjct: 475  EVIADPAAKTSEDILMKQFMREDLNKVLDTLNLREKQVVRWRFGLDDGRMKTLQEIGELM 534

Query: 252  GVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 154
            GVSRER+RQIESCAFRKLK+KKRTK+L QY+IS
Sbjct: 535  GVSRERIRQIESCAFRKLKSKKRTKNLRQYIIS 567


>ref|XP_010918654.1| PREDICTED: RNA polymerase sigma factor sigB-like [Elaeis guineensis]
          Length = 566

 Score =  611 bits (1576), Expect = e-172
 Identities = 329/571 (57%), Positives = 404/571 (70%), Gaps = 1/571 (0%)
 Frame = -2

Query: 1863 MACLLPQFMCPSDTLSLHYRPTQH-HNTHLKTKEPICFRGYCVSSSTTSLIDVEKLRLPS 1687
            MACL+PQF CPS +   H+R   H  + + K ++ +CFR  CVS+ T ++ID++  R+PS
Sbjct: 1    MACLVPQFKCPSISPEAHFRSVSHLPSLNSKARDSVCFRSQCVSTQTAAVIDIQ--RIPS 58

Query: 1686 IDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXX 1507
            ++  S S+   R LTY G++ PP+KT   ATLATET LTG                    
Sbjct: 59   LEARSNSLDDTRPLTYVGSVGPPMKTGIEATLATETLLTGEEAVVAAAAAEAVALARAAV 118

Query: 1506 XXXKDAAVMPTTNTLKILDNPESFTSKGDLLLIDSAKFTETEHVDTLGHFATTEFQPGEE 1327
               KDAA +   +    L+  E F+S+ D   ++  +  E   + T  H   T+ +P E 
Sbjct: 119  EVAKDAAQIIRNDPSVKLEKSEDFSSEADAFWLERVRHNEMGLIRTTHHSTPTDTEPHEA 178

Query: 1326 NVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXK 1147
              P    +D + S+  +NEL+  +MQ  ESI  RSG                       K
Sbjct: 179  KDPS---QDIDVSNLTNNELQSQQMQYPESIAVRSGRQTERKARRARAEEKAAVSVIPIK 235

Query: 1146 PGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXX 967
             GSS +KKR++ QE+DYSDPL YLRGTTST+KLLT ++ELELS GIQ             
Sbjct: 236  SGSSSKKKRSAFQEIDYSDPLHYLRGTTSTSKLLTAAEELELSKGIQDLLKLEKLREELA 295

Query: 966  ERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQ 787
            ER G QPT AQWAAAAG+D++TLRK LN+G  CKDKMIKSNIRLVISIAKNYQGAGMNLQ
Sbjct: 296  ERHGGQPTFAQWAAAAGVDQRTLRKRLNYGGFCKDKMIKSNIRLVISIAKNYQGAGMNLQ 355

Query: 786  DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 607
            DLVQEGCRGLV+GAE+FDA KGFKFSTYAHWWIKQAVR+SLS+QSRTIRLP HMVEATYR
Sbjct: 356  DLVQEGCRGLVKGAERFDALKGFKFSTYAHWWIKQAVRRSLSEQSRTIRLPIHMVEATYR 415

Query: 606  VKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLNLKPSEV 427
            V+EA+KQLYS+NGR P+ EE+AEATGLSMKRL AV+LTPK PRSLDQKIG + +LKPSEV
Sbjct: 416  VREAKKQLYSENGRHPDYEEVAEATGLSMKRLNAVMLTPKAPRSLDQKIGINQSLKPSEV 475

Query: 426  TADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGV 247
             ADP AET+E++L+KQFMK+DL+KVLD L+PRE QV+R RFGL+DG  KTLQEIGEL+GV
Sbjct: 476  IADPKAETSEEILIKQFMKQDLNKVLDTLNPREKQVVRWRFGLEDGMTKTLQEIGELMGV 535

Query: 246  SRERVRQIESCAFRKLKNKKRTKHLEQYLIS 154
            SRER+RQIES AFRKLK+KKRT+HL+QY+IS
Sbjct: 536  SRERIRQIESSAFRKLKSKKRTRHLQQYVIS 566


>gb|KJB46073.1| hypothetical protein B456_007G347300 [Gossypium raimondii]
          Length = 560

 Score =  608 bits (1569), Expect = e-171
 Identities = 334/578 (57%), Positives = 393/578 (67%), Gaps = 7/578 (1%)
 Frame = -2

Query: 1863 MACLLPQFMCPSDTLSLHYRPTQHHNTHLKTKEPICFRGYCV-------SSSTTSLIDVE 1705
            M+CLLPQF C  DT S+ +R   HH+ H K KE ICFR  CV       S +TT+++DVE
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRA--HHSHHSKHKESICFRSQCVLSTTSSTSMATTAVLDVE 58

Query: 1704 KLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXX 1525
            KLRLPS + HS SV   R  TYTGA  PP + SFGATLATE  LT               
Sbjct: 59   KLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAEAVA 118

Query: 1524 XXXXXXXXXKDAAVMPTTNTLKILDNPESFTSKGDLLLIDSAKFTETEHVDTLGHFATTE 1345
                     KDAA+M   +     +     +S  D L      FTE E    +G + + E
Sbjct: 119  LARAAAKVAKDAAIMVKNHGSAKTEMKSPGSSATDTLTSKWGLFTEAERAGIVGDYVSDE 178

Query: 1344 FQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXX 1165
             +  E+++  +S K++++ +  + EL+LL  QLS SI  RS                   
Sbjct: 179  LELEEDHLEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSHRQTERKAKRTRAAEKAAT 238

Query: 1164 XXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXX 985
                 K GS+ RK+R ++Q++DYSDPLRYLRGTT+T+KLLT ++ELELS GIQ       
Sbjct: 239  NVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQDLLKLEG 298

Query: 984  XXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQG 805
                  ERCG  PT AQWAAAA +DRKTLR+ LN+G  C DKMIKSNIRLVISIAKNYQG
Sbjct: 299  LHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICMDKMIKSNIRLVISIAKNYQG 358

Query: 804  AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 625
            AGMNLQDLVQEGCRGL+RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM
Sbjct: 359  AGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 418

Query: 624  VEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLN 445
            VEATYRVKEARKQL+S+NGR P++ E+AEATGLSMKRL AVLL PK PRSLDQKIG + N
Sbjct: 419  VEATYRVKEARKQLFSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGINQN 478

Query: 444  LKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEI 265
            LKPS                  FMK+DL+KVLD LSPRE QVIR RFG++DGR+KTLQEI
Sbjct: 479  LKPS------------------FMKKDLEKVLDSLSPRERQVIRWRFGMEDGRVKTLQEI 520

Query: 264  GELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLISY 151
            GE +GVSRER+RQIE CAFRKLKNK+RTKHL+QYL+SY
Sbjct: 521  GESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLSY 558