BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00041436
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002530223.1| pentatricopeptide repeat-containing protein,...   120   1e-40
ref|XP_002320514.1| predicted protein [Populus trichocarpa] gi|2...   132   2e-38
ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containi...   119   1e-37
ref|NP_194398.1| pentatricopeptide repeat-containing protein [Ar...   119   5e-35
ref|XP_002869597.1| pentatricopeptide repeat-containing protein ...   119   2e-34

>ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530270|gb|EEF32170.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 517

 Score =  120 bits (301), Expect(2) = 1e-40
 Identities = 57/88 (64%), Positives = 70/88 (79%)
 Frame = -1

Query: 264 SHILHILTDANRFRSAESIIKTTILPKSLDSSFNIFDAVLYSYRLCDSSPRVFDSLFKTY 85
           S ILHILT   +F+SAE I+K+ ++   +D    +F+A+LYSYR+CDSSPRVFDSLFKT 
Sbjct: 97  SMILHILTKNRKFKSAELILKSVLVKGFIDLPDKLFEAILYSYRMCDSSPRVFDSLFKTL 156

Query: 84  AHMKKFRNATEIFSRMKDYGFLPNVESC 1
           AHMKKFRNAT+ F +MK YGFLP VESC
Sbjct: 157 AHMKKFRNATDTFLQMKGYGFLPTVESC 184



 Score = 71.2 bits (173), Expect(2) = 1e-40
 Identities = 34/45 (75%), Positives = 37/45 (82%)
 Frame = -3

Query: 382 LTPFRTKHILLKIQKDHVLSLKFFNWVQKQKHNSHTLETISHSPH 248
           LTPFR KHILLKIQKDHVLSL+FFNWVQ +  +SHTLET S   H
Sbjct: 57  LTPFRVKHILLKIQKDHVLSLEFFNWVQTENPSSHTLETHSMILH 101


>ref|XP_002320514.1| predicted protein [Populus trichocarpa] gi|222861287|gb|EEE98829.1|
           predicted protein [Populus trichocarpa]
          Length = 478

 Score =  132 bits (331), Expect(2) = 2e-38
 Identities = 60/88 (68%), Positives = 75/88 (85%)
 Frame = -1

Query: 264 SHILHILTDANRFRSAESIIKTTILPKSLDSSFNIFDAVLYSYRLCDSSPRVFDSLFKTY 85
           S ILHILT  ++F+SA+SI++T +  +S+D    +FD +L+SYR+CDSSPRVFDSLFKTY
Sbjct: 80  SIILHILTKKSKFKSAQSILRTLLASRSIDLPGKLFDTLLFSYRMCDSSPRVFDSLFKTY 139

Query: 84  AHMKKFRNATEIFSRMKDYGFLPNVESC 1
           AHM KFRNAT++FSRMKDYGFLP VESC
Sbjct: 140 AHMNKFRNATDVFSRMKDYGFLPTVESC 167



 Score = 52.0 bits (123), Expect(2) = 2e-38
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = -3

Query: 379 TPFRTKHILLKIQKDHVLSLKFFNWVQKQKHNSHTLETIS 260
           TPFR  HILLKIQKDHVLSL+FFN ++     S TLET S
Sbjct: 41  TPFRVNHILLKIQKDHVLSLEFFNSLKTLNPISLTLETHS 80


>ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Vitis vinifera]
          Length = 616

 Score =  119 bits (297), Expect(2) = 1e-37
 Identities = 56/88 (63%), Positives = 70/88 (79%)
 Frame = -1

Query: 264 SHILHILTDANRFRSAESIIKTTILPKSLDSSFNIFDAVLYSYRLCDSSPRVFDSLFKTY 85
           S ILHILT  ++F+SAES++K  +   S+D    +F+A+LYSYR+CDSSP VFDSLFKTY
Sbjct: 195 SIILHILTKNHKFKSAESVLKGILGSGSIDHPSKLFEAILYSYRICDSSPCVFDSLFKTY 254

Query: 84  AHMKKFRNATEIFSRMKDYGFLPNVESC 1
           A MKK RNA ++F +MKDYGFLP VESC
Sbjct: 255 AQMKKLRNAIDVFCQMKDYGFLPRVESC 282



 Score = 62.8 bits (151), Expect(2) = 1e-37
 Identities = 28/41 (68%), Positives = 33/41 (80%)
 Frame = -3

Query: 382 LTPFRTKHILLKIQKDHVLSLKFFNWVQKQKHNSHTLETIS 260
           LTP+R KHI+LKI+KDHVLS +FFNWV+ Q  N  TLET S
Sbjct: 155 LTPYRMKHIMLKIKKDHVLSFEFFNWVKAQNPNCQTLETYS 195


>ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|334186944|ref|NP_001190849.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g26680, mitochondrial; Flags: Precursor
           gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis
           thaliana] gi|7269520|emb|CAB79523.1| putative protein
           [Arabidopsis thaliana] gi|332659836|gb|AEE85236.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana] gi|332659837|gb|AEE85237.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 521

 Score =  119 bits (299), Expect(2) = 5e-35
 Identities = 54/86 (62%), Positives = 69/86 (80%)
 Frame = -1

Query: 258 ILHILTDANRFRSAESIIKTTILPKSLDSSFNIFDAVLYSYRLCDSSPRVFDSLFKTYAH 79
           +LH LT   +F+SAESI++  ++   +D    +FDA+LYSYR CDS+PRVFDSLFKT+AH
Sbjct: 121 VLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLFKTFAH 180

Query: 78  MKKFRNATEIFSRMKDYGFLPNVESC 1
           +KKFRNAT+ F +MKDYGFLP VESC
Sbjct: 181 LKKFRNATDTFMQMKDYGFLPTVESC 206



 Score = 53.1 bits (126), Expect(2) = 5e-35
 Identities = 23/39 (58%), Positives = 31/39 (79%)
 Frame = -3

Query: 382 LTPFRTKHILLKIQKDHVLSLKFFNWVQKQKHNSHTLET 266
           L  FR K++LLKIQKD++LSL+FFNW + +   SH+LET
Sbjct: 79  LDSFRVKNVLLKIQKDYLLSLEFFNWAKTRNPGSHSLET 117


>ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297315433|gb|EFH45856.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 538

 Score =  119 bits (299), Expect(2) = 2e-34
 Identities = 54/86 (62%), Positives = 69/86 (80%)
 Frame = -1

Query: 258 ILHILTDANRFRSAESIIKTTILPKSLDSSFNIFDAVLYSYRLCDSSPRVFDSLFKTYAH 79
           +LH LT   +F+SAESI++  ++   +D    +FDA+LYSYR CDS+PRVFDSLFKT+AH
Sbjct: 121 VLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLFKTFAH 180

Query: 78  MKKFRNATEIFSRMKDYGFLPNVESC 1
           +KKFRNAT+ F +MKDYGFLP VESC
Sbjct: 181 LKKFRNATDTFMQMKDYGFLPTVESC 206



 Score = 50.8 bits (120), Expect(2) = 2e-34
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = -3

Query: 382 LTPFRTKHILLKIQKDHVLSLKFFNWVQKQKHNSHTLET 266
           L  FR K++LLKIQKD++LS +FFNW + +   SH+LET
Sbjct: 79  LDSFRVKNVLLKIQKDYLLSFEFFNWAKTRNPASHSLET 117