BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00041255
         (210 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40215.3| unnamed protein product [Vitis vinifera]              111   7e-23
ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containi...   111   7e-23
ref|XP_002530468.1| pentatricopeptide repeat-containing protein,...   102   2e-20
ref|XP_002329533.1| predicted protein [Populus trichocarpa] gi|2...    96   2e-18
ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containi...    94   1e-17

>emb|CBI40215.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  111 bits (277), Expect = 7e-23
 Identities = 51/69 (73%), Positives = 60/69 (86%)
 Frame = +1

Query: 4   ERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCR 183
           ERNVVSWNAMISGYVQN DL +AR LFDEMPE+NVASWN+++TGY HC +M EA +LF +
Sbjct: 129 ERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQ 188

Query: 184 MEDRNSVSW 210
           M +RNSVSW
Sbjct: 189 MPERNSVSW 197



 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 34/69 (49%), Positives = 49/69 (71%)
 Frame = +1

Query: 4   ERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCR 183
           +R+VVSWN+MI+GY QN  +  AR LFD    +N+ +W  L+TGY+  G++EEA ++F  
Sbjct: 67  QRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFES 126

Query: 184 MEDRNSVSW 210
           M +RN VSW
Sbjct: 127 MTERNVVSW 135



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 26/68 (38%), Positives = 43/68 (63%)
 Frame = +1

Query: 7   RNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCRM 186
           +N+ +W  +++GY +   +  AR +F+ M ERNV SWN +I+GY   G ++ A +LF  M
Sbjct: 99  KNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEM 158

Query: 187 EDRNSVSW 210
            ++N  SW
Sbjct: 159 PEKNVASW 166


>ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  111 bits (277), Expect = 7e-23
 Identities = 51/69 (73%), Positives = 60/69 (86%)
 Frame = +1

Query: 4   ERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCR 183
           ERNVVSWNAMISGYVQN DL +AR LFDEMPE+NVASWN+++TGY HC +M EA +LF +
Sbjct: 261 ERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQ 320

Query: 184 MEDRNSVSW 210
           M +RNSVSW
Sbjct: 321 MPERNSVSW 329



 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 34/69 (49%), Positives = 49/69 (71%)
 Frame = +1

Query: 4   ERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCR 183
           +R+VVSWN+MI+GY QN  +  AR LFD    +N+ +W  L+TGY+  G++EEA ++F  
Sbjct: 199 QRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFES 258

Query: 184 MEDRNSVSW 210
           M +RN VSW
Sbjct: 259 MTERNVVSW 267



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 26/68 (38%), Positives = 43/68 (63%)
 Frame = +1

Query: 7   RNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCRM 186
           +N+ +W  +++GY +   +  AR +F+ M ERNV SWN +I+GY   G ++ A +LF  M
Sbjct: 231 KNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEM 290

Query: 187 EDRNSVSW 210
            ++N  SW
Sbjct: 291 PEKNVASW 298



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 29/70 (41%), Positives = 43/70 (61%)
 Frame = +1

Query: 1   PERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFC 180
           PE+ V +  AM++ Y Q   +  AR +FDE+   NV +WN +I GY+  G ++EA  LF 
Sbjct: 454 PEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQ 513

Query: 181 RMEDRNSVSW 210
           +M  +NS SW
Sbjct: 514 KMPVKNSASW 523



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 29/65 (44%), Positives = 40/65 (61%)
 Frame = +1

Query: 10  NVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCRME 189
           NVV+WNA+I+GY QN  L  A+ LF +MP +N ASW  +I G+    +  EAL+L   + 
Sbjct: 488 NVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELH 547

Query: 190 DRNSV 204
              SV
Sbjct: 548 RSGSV 552



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 27/60 (45%), Positives = 39/60 (65%)
 Frame = +1

Query: 7   RNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCRM 186
           ++ VSWN++ISG  +N  L  AR +F++MP+R+V SW  +I+ Y   G  E AL LF  M
Sbjct: 619 KDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDM 678



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 24/64 (37%), Positives = 43/64 (67%)
 Frame = +1

Query: 4   ERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCR 183
           E +VV  +A+++ Y +N  L  A   F+ MPERN  SW T+I  ++ CG++++A+QL+ R
Sbjct: 393 EGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYER 452

Query: 184 MEDR 195
           + ++
Sbjct: 453 VPEQ 456


>ref|XP_002530468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530013|gb|EEF31938.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 801

 Score =  102 bits (255), Expect = 2e-20
 Identities = 48/70 (68%), Positives = 59/70 (84%)
 Frame = +1

Query: 1   PERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFC 180
           PERNVVSWNAM++G+VQN DL +AR  F EMPERNV+SWN++ITGY   G M+EA +LF 
Sbjct: 117 PERNVVSWNAMLAGFVQNGDLRNARKCFYEMPERNVSSWNSIITGYCKSGLMKEARELFD 176

Query: 181 RMEDRNSVSW 210
           RME+R+SVSW
Sbjct: 177 RMEERSSVSW 186



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 33/70 (47%), Positives = 46/70 (65%)
 Frame = +1

Query: 1   PERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFC 180
           P+R+ VSWN+MIS Y+QN  +  A+ LFD    +NV +W  L++GY+  G +EEA   F 
Sbjct: 55  PQRDAVSWNSMISVYLQNNKIPDAKSLFDAFEYKNVRTWTILLSGYAKAGLIEEAETFFR 114

Query: 181 RMEDRNSVSW 210
            M +RN VSW
Sbjct: 115 SMPERNVVSW 124



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 27/59 (45%), Positives = 37/59 (62%)
 Frame = +1

Query: 10  NVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCRM 186
           NVV+WNAM+ GY QN  L  A+ +F +MP RN  SW  +I G+   G  +E L+LF  +
Sbjct: 345 NVVAWNAMLGGYAQNGMLEEAKAIFLQMPVRNAVSWAAMIGGFVQNGNGKEGLKLFTEL 403



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 27/62 (43%), Positives = 37/62 (59%)
 Frame = +1

Query: 1   PERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFC 180
           PERNV SWN++I+GY ++  +  AR LFD M ER+  SW  + +GY    Q  E   +F 
Sbjct: 148 PERNVSSWNSIITGYCKSGLMKEARELFDRMEERSSVSWMVMASGYVEISQYREGWCVFL 207

Query: 181 RM 186
            M
Sbjct: 208 MM 209



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 24/60 (40%), Positives = 39/60 (65%)
 Frame = +1

Query: 31  MISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCRMEDRNSVSW 210
           +I+ Y+ N  +  A+ +FDE+   NV +WN ++ GY+  G +EEA  +F +M  RN+VSW
Sbjct: 321 IIAAYMHNGRIDEAKHIFDEIVNPNVVAWNAMLGGYAQNGMLEEAKAIFLQMPVRNAVSW 380


>ref|XP_002329533.1| predicted protein [Populus trichocarpa] gi|222870242|gb|EEF07373.1|
           predicted protein [Populus trichocarpa]
          Length = 693

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 42/70 (60%), Positives = 55/70 (78%)
 Frame = +1

Query: 1   PERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFC 180
           PERNVVSWNAM++G ++N DL  AR +FDE+PE+NV SWN +I G++  G+MEEA  LF 
Sbjct: 122 PERNVVSWNAMVAGLIKNEDLEEARRVFDEIPEKNVVSWNAMIKGFAENGKMEEARVLFE 181

Query: 181 RMEDRNSVSW 210
            MEDRN ++W
Sbjct: 182 EMEDRNVITW 191



 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 38/70 (54%), Positives = 49/70 (70%)
 Frame = +1

Query: 1   PERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFC 180
           PE+NVVSWNAMI G+ +N  +  AR LF+EM +RNV +W T+I GY   G + EA   FC
Sbjct: 153 PEKNVVSWNAMIKGFAENGKMEEARVLFEEMEDRNVITWTTMIAGYCRIGDVREAYCFFC 212

Query: 181 RMEDRNSVSW 210
           R+ +RN VSW
Sbjct: 213 RIPERNVVSW 222



 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 38/70 (54%), Positives = 51/70 (72%)
 Frame = +1

Query: 1   PERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFC 180
           PERN+VS+N M+SGY+Q   L  AR LF+EMPERNV SW +++ G +  G++ EA +LF 
Sbjct: 60  PERNIVSYNVMLSGYLQCGRLSEARGLFEEMPERNVVSWTSMLCGLADAGRICEARELFK 119

Query: 181 RMEDRNSVSW 210
            M +RN VSW
Sbjct: 120 EMPERNVVSW 129



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 33/70 (47%), Positives = 44/70 (62%)
 Frame = +1

Query: 1   PERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFC 180
           PERNVVSW +M+ G      +  AR LF EMPERNV SWN ++ G      +EEA ++F 
Sbjct: 91  PERNVVSWTSMLCGLADAGRICEARELFKEMPERNVVSWNAMVAGLIKNEDLEEARRVFD 150

Query: 181 RMEDRNSVSW 210
            + ++N VSW
Sbjct: 151 EIPEKNVVSW 160



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 29/68 (42%), Positives = 45/68 (66%)
 Frame = +1

Query: 4   ERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCR 183
           +RNV++W  MI+GY +  D+  A C F  +PERNV SW  +I+G++  G   EAL LF  
Sbjct: 185 DRNVITWTTMIAGYCRIGDVREAYCFFCRIPERNVVSWTAMISGFTWNGYYGEALLLFLE 244

Query: 184 MEDRNSVS 207
           M+ R++++
Sbjct: 245 MKRRSNIA 252



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
 Frame = +1

Query: 1   PERN----VVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEAL 168
           PER+    +  W ++++ Y +   +  +R LFD MPERN+ S+N +++GY  CG++ EA 
Sbjct: 25  PERSRHSRIAHWTSLLTKYSRIGFIDESRVLFDIMPERNIVSYNVMLSGYLQCGRLSEAR 84

Query: 169 QLFCRMEDRNSVSW 210
            LF  M +RN VSW
Sbjct: 85  GLFEEMPERNVVSW 98



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/66 (42%), Positives = 40/66 (60%)
 Frame = +1

Query: 13  VVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCRMED 192
           V S N MI+GY +   +  AR LFD +P R+  +W ++I GY   G + EA  LF  M D
Sbjct: 325 VQSCNHMINGYTRIGQVEKARELFDTIPARDNITWTSMIVGYFDIGNVSEACYLFENMPD 384

Query: 193 RNSVSW 210
           ++SV+W
Sbjct: 385 KDSVAW 390


>ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 39/70 (55%), Positives = 54/70 (77%)
 Frame = +1

Query: 1   PERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFC 180
           PE+N VSWNAMI+GYVQ++ +  AR LFD+MP RN +SWNT++TGY+ CG +++A  LF 
Sbjct: 304 PEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFD 363

Query: 181 RMEDRNSVSW 210
            M  R+ +SW
Sbjct: 364 EMPQRDCISW 373



 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 33/70 (47%), Positives = 56/70 (80%)
 Frame = +1

Query: 1   PERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFC 180
           P+R+++SWN M+SGYV+N +L +AR LF++MPE++V SWN +++G++  G +EEA ++F 
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFD 177

Query: 181 RMEDRNSVSW 210
           +M  +N +SW
Sbjct: 178 QMLVKNEISW 187



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 35/70 (50%), Positives = 48/70 (68%)
 Frame = +1

Query: 1   PERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFC 180
           P R+V +W AM+SG+VQN  L  A  +F+EMPE+N  SWN +I GY    Q+E+A +LF 
Sbjct: 273 PIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFD 332

Query: 181 RMEDRNSVSW 210
           +M  RN+ SW
Sbjct: 333 QMPSRNTSSW 342



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 32/63 (50%), Positives = 44/63 (69%)
 Frame = +1

Query: 1   PERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFC 180
           P RN  SWN M++GY Q  ++  A+ LFDEMP+R+  SW  +I+GY+  GQ EEAL LF 
Sbjct: 335 PSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFI 394

Query: 181 RME 189
           +M+
Sbjct: 395 KMK 397



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 31/70 (44%), Positives = 48/70 (68%)
 Frame = +1

Query: 1   PERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFC 180
           P R+ +SWN MI+GY QN  L  AR LF+E+P R+V +W  +++G+   G ++EA ++F 
Sbjct: 242 PVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFE 301

Query: 181 RMEDRNSVSW 210
            M ++N VSW
Sbjct: 302 EMPEKNEVSW 311



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 33/70 (47%), Positives = 47/70 (67%)
 Frame = +1

Query: 1   PERNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFC 180
           PE++VVSWNAM+SG+ QN  +  AR +FD+M  +N  SWN L++ Y   G++E+A +LF 
Sbjct: 149 PEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFD 208

Query: 181 RMEDRNSVSW 210
              D   VSW
Sbjct: 209 SKMDWEIVSW 218



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 29/68 (42%), Positives = 47/68 (69%)
 Frame = +1

Query: 7   RNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCRM 186
           R+ V++NAMISGY+ N     AR +F++MP+R++ SWN +++GY   G +  A  LF +M
Sbjct: 89  RSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQM 148

Query: 187 EDRNSVSW 210
            +++ VSW
Sbjct: 149 PEKDVVSW 156



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 30/66 (45%), Positives = 43/66 (65%)
 Frame = +1

Query: 13  VVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCRMED 192
           +VSWN ++ GYV+ + L  AR LFD MP R+  SWN +ITGY+  G + EA +LF  +  
Sbjct: 215 IVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPI 274

Query: 193 RNSVSW 210
           R+  +W
Sbjct: 275 RDVFAW 280



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 28/68 (41%), Positives = 42/68 (61%)
 Frame = +1

Query: 7   RNVVSWNAMISGYVQNRDLVSARCLFDEMPERNVASWNTLITGYSHCGQMEEALQLFCRM 186
           +N +SWN ++S YVQN  +  AR LFD   +  + SWN L+ GY    ++++A  LF RM
Sbjct: 182 KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRM 241

Query: 187 EDRNSVSW 210
             R+ +SW
Sbjct: 242 PVRDKISW 249