BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00041126
         (379 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containi...   182   3e-44
emb|CBI31859.3| unnamed protein product [Vitis vinifera]              182   3e-44
ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containi...   177   1e-42
ref|XP_003623891.1| Pentatricopeptide repeat-containing protein ...   175   4e-42
ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   171   6e-41

>ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  182 bits (461), Expect = 3e-44
 Identities = 86/125 (68%), Positives = 105/125 (84%)
 Frame = -3

Query: 377 KVKPDEITVASVLSACANLGRLDIGKAVHEYIHAHKVKEDVHVGNSLIDLYFKCGCMEKA 198
           KVKPD++TVASVLSACA+LG+LD+G AVH YI  H V+ D++VGNSLID+Y KCG +EKA
Sbjct: 344 KVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKA 403

Query: 197 LEVFEEMADKDIVSWTSVITGLAVNGYAKEALKFFSDMLREGFQPSNVTFIGVLVACTHA 18
           LEVF  M DKD VSWTSVI+GLAVNG+A  AL  FS MLREG QP++ TF+G+L+AC HA
Sbjct: 404 LEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHA 463

Query: 17  GLVDE 3
           GLV++
Sbjct: 464 GLVNK 468



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 31/154 (20%)
 Frame = -3

Query: 374 VKPDEITVASVLSACANLGRLDIGKAVHEYIHAHKVKEDVHVGNSLIDLY---------- 225
           +K D +T+  ++ AC++LG  +   ++ +YI  + ++ DV++GN+LID+Y          
Sbjct: 213 IKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQ 272

Query: 224 ---------------------FKCGCMEKALEVFEEMADKDIVSWTSVITGLAVNGYAKE 108
                                 K G +  A ++F+ M  +D++SWTS+ITG +      +
Sbjct: 273 GVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSD 332

Query: 107 ALKFFSDMLREGFQPSNVTFIGVLVACTHAGLVD 6
           A+K F +M+    +P  VT   VL AC H G +D
Sbjct: 333 AVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLD 366



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
 Frame = -3

Query: 365 DEITVASVLSACANLGRLDIGKAVHEYIHAHKV--KEDVHVGNSLIDLYFKCGCMEKALE 192
           + +T+  +  ACA +  +  G+ +H  +HA K+  +  + V N+LI +Y  CG +  A +
Sbjct: 115 NNLTLIFLFKACARVSDIVSGRKIH--VHALKLGFESYLFVSNALIHMYAMCGQLGFAQK 172

Query: 191 VFEEMADKDIVSWTSVITGLAVNGYAKEALKFFSDMLREGFQPSNVTFIGVLVACTHAG 15
           +F+ M D+D+VSW ++I G +     KE L+ F  M     +   VT + +++AC+H G
Sbjct: 173 MFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLG 231


>emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  182 bits (461), Expect = 3e-44
 Identities = 86/125 (68%), Positives = 105/125 (84%)
 Frame = -3

Query: 377 KVKPDEITVASVLSACANLGRLDIGKAVHEYIHAHKVKEDVHVGNSLIDLYFKCGCMEKA 198
           KVKPD++TVASVLSACA+LG+LD+G AVH YI  H V+ D++VGNSLID+Y KCG +EKA
Sbjct: 221 KVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKA 280

Query: 197 LEVFEEMADKDIVSWTSVITGLAVNGYAKEALKFFSDMLREGFQPSNVTFIGVLVACTHA 18
           LEVF  M DKD VSWTSVI+GLAVNG+A  AL  FS MLREG QP++ TF+G+L+AC HA
Sbjct: 281 LEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHA 340

Query: 17  GLVDE 3
           GLV++
Sbjct: 341 GLVNK 345



 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 43/123 (34%), Positives = 77/123 (62%)
 Frame = -3

Query: 374 VKPDEITVASVLSACANLGRLDIGKAVHEYIHAHKVKEDVHVGNSLIDLYFKCGCMEKAL 195
           +K D +T+  ++ AC++LG  +   ++ +YI  + ++ DV++GN+LID+Y + G +  A 
Sbjct: 121 IKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAAR 180

Query: 194 EVFEEMADKDIVSWTSVITGLAVNGYAKEALKFFSDMLREGFQPSNVTFIGVLVACTHAG 15
           ++F+ M  +D++SWTS+ITG +      +A+K F +M+    +P  VT   VL AC H G
Sbjct: 181 KLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLG 240

Query: 14  LVD 6
            +D
Sbjct: 241 KLD 243



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
 Frame = -3

Query: 350 ASVLSACANLGRLDIGKAVHEYIHAHKV--KEDVHVGNSLIDLYFKCGCMEKALEVFEEM 177
           A V++   N+    I  ++H  +HA K+  +  + V N+LI +Y  CG +  A ++F+ M
Sbjct: 28  ALVVALTTNINASTISSSIH--VHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGM 85

Query: 176 ADKDIVSWTSVITGLAVNGYAKEALKFFSDMLREGFQPSNVTFIGVLVACTHAG 15
            D+D+VSW ++I G +     KE L+ F  M     +   VT + +++AC+H G
Sbjct: 86  LDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLG 139


>ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  177 bits (448), Expect = 1e-42
 Identities = 84/125 (67%), Positives = 104/125 (83%)
 Frame = -3

Query: 377 KVKPDEITVASVLSACANLGRLDIGKAVHEYIHAHKVKEDVHVGNSLIDLYFKCGCMEKA 198
           KVKPDEITVASVLSACA+ G LD+G+A H+YI  + VK D++VGN+LID+Y KCG +EKA
Sbjct: 305 KVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKA 364

Query: 197 LEVFEEMADKDIVSWTSVITGLAVNGYAKEALKFFSDMLREGFQPSNVTFIGVLVACTHA 18
           LEVF+EM  KD VSWTS+I+GLAVNG+A  AL +FS MLRE  QPS+  F+G+L+AC HA
Sbjct: 365 LEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHA 424

Query: 17  GLVDE 3
           GLVD+
Sbjct: 425 GLVDK 429



 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 31/154 (20%)
 Frame = -3

Query: 374 VKPDEITVASVLSACANLGRLDIGKAVHEYIHAHKVKEDVHVGNSLIDL----------- 228
           VK D +T+  V+ AC +LG   +  A+ +YI  + V+ DV++GN+LID+           
Sbjct: 174 VKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLAR 233

Query: 227 --------------------YFKCGCMEKALEVFEEMADKDIVSWTSVITGLAVNGYAKE 108
                               Y K G +  A E+F+ M+ +D++SWT++IT  +  G   E
Sbjct: 234 GVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTE 293

Query: 107 ALKFFSDMLREGFQPSNVTFIGVLVACTHAGLVD 6
           AL+ F +M+    +P  +T   VL AC H G +D
Sbjct: 294 ALRLFKEMMESKVKPDEITVASVLSACAHTGSLD 327



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 36/117 (30%), Positives = 62/117 (52%)
 Frame = -3

Query: 365 DEITVASVLSACANLGRLDIGKAVHEYIHAHKVKEDVHVGNSLIDLYFKCGCMEKALEVF 186
           + +T   +  ACA +  +  G  +H  +     +  ++V N+LI++Y  CG +  A +VF
Sbjct: 76  NNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVF 135

Query: 185 EEMADKDIVSWTSVITGLAVNGYAKEALKFFSDMLREGFQPSNVTFIGVLVACTHAG 15
           +EM ++D+VSW S++ G       +E L  F  M   G +   VT + V++ACT  G
Sbjct: 136 DEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLG 192


>ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355498906|gb|AES80109.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  175 bits (443), Expect = 4e-42
 Identities = 84/125 (67%), Positives = 102/125 (81%)
 Frame = -3

Query: 377  KVKPDEITVASVLSACANLGRLDIGKAVHEYIHAHKVKEDVHVGNSLIDLYFKCGCMEKA 198
            KVKPDEITVASVLSACA++G LD+G+AVHEYI  + V  D++VGN+LID+Y KCG +EK 
Sbjct: 1023 KVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKG 1082

Query: 197  LEVFEEMADKDIVSWTSVITGLAVNGYAKEALKFFSDMLREGFQPSNVTFIGVLVACTHA 18
            L VFEEM  +D VSWTSVI GLAVNG A  AL  FS MLREG +P++ TF+GVL+AC HA
Sbjct: 1083 LSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHA 1142

Query: 17   GLVDE 3
            G+VD+
Sbjct: 1143 GVVDK 1147



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 31/154 (20%)
 Frame = -3

Query: 374  VKPDEITVASVLSACANLGRLDIGKAVHEYIHAHKVKEDVHVGNSLIDLYF--------- 222
            VK D +T+  V+ AC  LG   +  A+ EYI  +KV+ DV++GN+LID+Y          
Sbjct: 892  VKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLAR 951

Query: 221  ----------------------KCGCMEKALEVFEEMADKDIVSWTSVITGLAVNGYAKE 108
                                  K G +  A ++F++M  +D++SWTS+I+  +  G   +
Sbjct: 952  RVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGK 1011

Query: 107  ALKFFSDMLREGFQPSNVTFIGVLVACTHAGLVD 6
            A++ F +M+    +P  +T   VL AC H G +D
Sbjct: 1012 AVRLFQEMMVTKVKPDEITVASVLSACAHIGALD 1045



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 36/117 (30%), Positives = 57/117 (48%)
 Frame = -3

Query: 365  DEITVASVLSACANLGRLDIGKAVHEYIHAHKVKEDVHVGNSLIDLYFKCGCMEKALEVF 186
            + +T   +L ACA +  +     VH  +       D+ V N+LI  Y     +  A +VF
Sbjct: 795  NNLTYPFLLKACARISNVSC-TTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVF 853

Query: 185  EEMADKDIVSWTSVITGLAVNGYAKEALKFFSDMLREGFQPSNVTFIGVLVACTHAG 15
            +EM+++D+VSW S+I G        E L  F +M     +   VT + V++ACT  G
Sbjct: 854  DEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLG 910


>ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  171 bits (433), Expect = 6e-41
 Identities = 80/124 (64%), Positives = 100/124 (80%)
 Frame = -3

Query: 374 VKPDEITVASVLSACANLGRLDIGKAVHEYIHAHKVKEDVHVGNSLIDLYFKCGCMEKAL 195
           VKPDEITVA+ LSACA+LG LD G+AVH+YI  H +K DV VGNSLID+Y KCG +EKAL
Sbjct: 301 VKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKAL 360

Query: 194 EVFEEMADKDIVSWTSVITGLAVNGYAKEALKFFSDMLREGFQPSNVTFIGVLVACTHAG 15
           +VF +M  +D VSWTS+I+GLAVNG+A+ AL  F  ML+EG  P++ TF+GVL+AC H G
Sbjct: 361 QVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVG 420

Query: 14  LVDE 3
           LVD+
Sbjct: 421 LVDK 424



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 31/154 (20%)
 Frame = -3

Query: 374 VKPDEITVASVLSACANLGRLDIGKAVHEYIHAHKVKEDVHVGNSLIDL----------- 228
           V+ D +T+   +SA   L   ++G  + +YI  H V  D+++GN+LID+           
Sbjct: 169 VRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAG 228

Query: 227 --------------------YFKCGCMEKALEVFEEMADKDIVSWTSVITGLAVNGYAKE 108
                               Y K G +  A ++F EM  +D++SWTS+I G ++     E
Sbjct: 229 RVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAE 288

Query: 107 ALKFFSDMLREGFQPSNVTFIGVLVACTHAGLVD 6
           A+K F +M+    +P  +T    L AC H G +D
Sbjct: 289 AVKLFQEMMVSMVKPDEITVATALSACAHLGSLD 322