BLASTX nr result

ID: Cimicifuga21_contig00038938 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00038938
         (279 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631409.1| PREDICTED: uncharacterized protein LOC100853...    57   1e-06
ref|XP_002298969.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06
ref|XP_002298970.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06

>ref|XP_003631409.1| PREDICTED: uncharacterized protein LOC100853997 [Vitis vinifera]
          Length = 75

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 34/80 (42%), Positives = 42/80 (52%)
 Frame = -3

Query: 277 FSSFDAVCAEYLGQKVGFGXXXXXXXXXXXXXXXXXXXXSETDRKERSSGPSAAQVSRKP 98
           FSSFDAVC E+L QK+                         T++    S P++    RK 
Sbjct: 5   FSSFDAVCFEFLSQKL----------KSSLPSGNKMESQQSTEKLGNPSPPASVGKPRKE 54

Query: 97  RVPRFAVELDGLNCFETVVS 38
           RVPRFA ELDGL+CFET+VS
Sbjct: 55  RVPRFAPELDGLHCFETLVS 74


>ref|XP_002298969.1| predicted protein [Populus trichocarpa]
           gi|224147080|ref|XP_002336403.1| predicted protein
           [Populus trichocarpa] gi|222834911|gb|EEE73360.1|
           predicted protein [Populus trichocarpa]
           gi|222846227|gb|EEE83774.1| predicted protein [Populus
           trichocarpa]
          Length = 89

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
 Frame = -3

Query: 277 FSSFDAVCAEYLGQKVGFGXXXXXXXXXXXXXXXXXXXXSETDRK--ERSSGPSAAQVSR 104
           FSSFDA+CAE LGQKV                          + K  +   G S+  ++R
Sbjct: 5   FSSFDALCAELLGQKVRSSLALTTMDCNTKRVLTAGDNSMVAEDKLIKNREGSSSRSLAR 64

Query: 103 KP--RVPRFAVELDGLNCFETVVS 38
           K   +VPRFA ELDGLNCFET+V+
Sbjct: 65  KQEKKVPRFAPELDGLNCFETIVN 88


>ref|XP_002298970.1| predicted protein [Populus trichocarpa] gi|222846228|gb|EEE83775.1|
           predicted protein [Populus trichocarpa]
          Length = 89

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 35/84 (41%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
 Frame = -3

Query: 277 FSSFDAVCAEYLGQKV--GFGXXXXXXXXXXXXXXXXXXXXSETDRKERSSGPSAAQVSR 104
           FSSFDA+CAE LGQKV                          E    +   G S+  ++R
Sbjct: 5   FSSFDALCAELLGQKVRSSLALTTMDCNTKRVLTAGDNSEVGEDKLIKNREGSSSRSLAR 64

Query: 103 K--PRVPRFAVELDGLNCFETVVS 38
           K   +VPRFA ELDGLNCFET+V+
Sbjct: 65  KQEKKVPRFAPELDGLNCFETIVN 88


Top