BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00038731
         (228 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324365.1| glutamate-gated kainate-type ion channel rec...    65   6e-09
ref|XP_002332794.1| glutamate-gated kainate-type ion channel rec...    65   8e-09
ref|XP_002332799.1| glutamate-gated kainate-type ion channel rec...    62   6e-08
ref|XP_002338287.1| glutamate-gated kainate-type ion channel rec...    61   1e-07
ref|XP_002332797.1| glutamate-gated kainate-type ion channel rec...    61   1e-07

>ref|XP_002324365.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222865799|gb|EEF02930.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 901

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
 Frame = +1

Query: 22  VVHNLFFTFKILLACIQLAEAQDGDAIVPIHTGVILDMDS-LTGKVSTTCMHMAISDFYA 198
           V+   FF  KIL   + +AE    +  +P++ GV+LD+DS L GK++ +C+ MA+SDFYA
Sbjct: 7   VLSFFFFCVKILFTGMGMAE----NTSIPVNVGVVLDLDSDLDGKIALSCIEMALSDFYA 62

Query: 199 IHDDYKTRLL 228
            H DYKTRL+
Sbjct: 63  THGDYKTRLV 72


>ref|XP_002332794.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222834793|gb|EEE73256.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 901

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
 Frame = +1

Query: 13  NRYVVHNLFFTFKILLACIQLAEAQDGDAIVPIHTGVILDMDS-LTGKVSTTCMHMAISD 189
           ++ V+   FF+ KIL   + +AE    +  +P++ GV+LD+DS L G+++ +C+ MA+SD
Sbjct: 4   SKAVLSFFFFSVKILFTGMGMAE----NTSIPVNVGVVLDLDSDLDGRIALSCIEMALSD 59

Query: 190 FYAIHDDYKTRL 225
           FYA H DYKTRL
Sbjct: 60  FYATHGDYKTRL 71


>ref|XP_002332799.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222834798|gb|EEE73261.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 104

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 28/65 (43%), Positives = 45/65 (69%)
 Frame = +1

Query: 34  LFFTFKILLACIQLAEAQDGDAIVPIHTGVILDMDSLTGKVSTTCMHMAISDFYAIHDDY 213
           +FF   + +  I++  AQ+  A +P++ GV+LD++   G +  TC++MA+SDFYA H DY
Sbjct: 13  VFFFLSLKIWFIEVLVAQN-TATIPVNVGVVLDLEFSGGNIGLTCINMALSDFYASHSDY 71

Query: 214 KTRLL 228
           KTRL+
Sbjct: 72  KTRLV 76


>ref|XP_002338287.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222871733|gb|EEF08864.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 96

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 25/52 (48%), Positives = 40/52 (76%)
 Frame = +1

Query: 73  LAEAQDGDAIVPIHTGVILDMDSLTGKVSTTCMHMAISDFYAIHDDYKTRLL 228
           +A AQ+  + +P++ GV+LD+ SL   ++ +C++MA+SDFYA H DYKTRL+
Sbjct: 1   MAVAQNTTSTIPVNVGVVLDLASLDANIALSCINMALSDFYASHGDYKTRLV 52


>ref|XP_002332797.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222834796|gb|EEE73259.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 854

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
 Frame = +1

Query: 13  NRYVVHNLFFTFKILLACIQLAEAQDGDAIVPIHTGVILDMDS-LTGKVSTTCMHMAISD 189
           N   V +  F  KIL   + +AE    +  +P+  GV+LD++S L G+++ +C+ MA+SD
Sbjct: 5   NSKAVLSFLFCVKILFTGMGMAE----NTSIPVSVGVVLDLESDLDGRIALSCIEMALSD 60

Query: 190 FYAIHDDYKTRLL 228
           FYA H DYKTRL+
Sbjct: 61  FYATHGDYKTRLV 73