BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00038571
         (431 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17926.3| unnamed protein product [Vitis vinifera]              171   4e-41
emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]   171   6e-41
ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21
ref|XP_003610748.1| Pentatricopeptide repeat-containing protein ...   105   5e-21
ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   102   3e-20

>emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  171 bits (434), Expect = 4e-41
 Identities = 83/132 (62%), Positives = 104/132 (78%)
 Frame = +3

Query: 36  PLLLYKQMLDADVRPSGHTFMYLIKALTPQMCILEGEEVHSHVVKFGFGYSQYVSSALVG 215
           PLL Y Q L A +RP+GHTFMYL+KAL     + EGEEVH+ VV+ GF  S++VS AL+G
Sbjct: 75  PLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLG 134

Query: 216 FYVACGNVNRGRRLFDEMCEPGLILWTSMIRAYVCVNCPKDALEVFGKMREVGIMPDPVA 395
           FYVACG V +GR++FDEM +PGL+LWT +IRAYVCV  P+ ALE+F  MREVG+ PD VA
Sbjct: 135 FYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVA 194

Query: 396 LATIVSACTLLG 431
           ++T+VSAC LLG
Sbjct: 195 ISTVVSACGLLG 206



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 34/131 (25%), Positives = 62/131 (47%)
 Frame = +3

Query: 39  LLLYKQMLDADVRPSGHTFMYLIKALTPQMCILEGEEVHSHVVKFGFGYSQYVSSALVGF 218
           L  + +M  + V P+  T +  + A      +  G  +H++V K        + S+L+  
Sbjct: 309 LTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDM 368

Query: 219 YVACGNVNRGRRLFDEMCEPGLILWTSMIRAYVCVNCPKDALEVFGKMREVGIMPDPVAL 398
           Y  CG++++  ++F+E     L  WTS++         + AL  F KM+E  + PD V +
Sbjct: 369 YSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTM 428

Query: 399 ATIVSACTLLG 431
             ++SAC   G
Sbjct: 429 VGVLSACAHAG 439


>emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score =  171 bits (433), Expect = 6e-41
 Identities = 83/132 (62%), Positives = 104/132 (78%)
 Frame = +3

Query: 36  PLLLYKQMLDADVRPSGHTFMYLIKALTPQMCILEGEEVHSHVVKFGFGYSQYVSSALVG 215
           PLL Y Q L A +RP+GHTFMYL+KAL     + EGEEVH+ VV+ GF  S++VS AL+G
Sbjct: 75  PLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLG 134

Query: 216 FYVACGNVNRGRRLFDEMCEPGLILWTSMIRAYVCVNCPKDALEVFGKMREVGIMPDPVA 395
           FYVACG V +GR++FDEM +PGL+LWT +IRAYVCV  P+ ALE+F  MREVG+ PD VA
Sbjct: 135 FYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVA 194

Query: 396 LATIVSACTLLG 431
           ++T+VSAC LLG
Sbjct: 195 VSTVVSACGLLG 206



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 34/131 (25%), Positives = 62/131 (47%)
 Frame = +3

Query: 39  LLLYKQMLDADVRPSGHTFMYLIKALTPQMCILEGEEVHSHVVKFGFGYSQYVSSALVGF 218
           L  + +M  + V P+  T +  + A      +  G  +H++V K        + S+L+  
Sbjct: 309 LTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDM 368

Query: 219 YVACGNVNRGRRLFDEMCEPGLILWTSMIRAYVCVNCPKDALEVFGKMREVGIMPDPVAL 398
           Y  CG++++  ++F+E     L  WTS++         + AL  F KM+E  + PD V +
Sbjct: 369 YSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTM 428

Query: 399 ATIVSACTLLG 431
             ++SAC   G
Sbjct: 429 VGVLSACAHAG 439


>ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  107 bits (266), Expect = 1e-21
 Identities = 52/138 (37%), Positives = 83/138 (60%)
 Frame = +3

Query: 15  NSGAKCSPLLLYKQMLDADVRPSGHTFMYLIKALTPQMCILEGEEVHSHVVKFGFGYSQY 194
           ++G     +LLY QML   + P  +TF +L+ A +  + + EG +VH  V+K G     +
Sbjct: 107 SAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIF 166

Query: 195 VSSALVGFYVACGNVNRGRRLFDEMCEPGLILWTSMIRAYVCVNCPKDALEVFGKMREVG 374
           VS++L+ FY  CG V+ GR+LFD M E  ++ WTS+I  Y   +  K+A+ +F +M E G
Sbjct: 167 VSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAG 226

Query: 375 IMPDPVALATIVSACTLL 428
           + P+PV +  ++SAC  L
Sbjct: 227 VEPNPVTMVCVISACAKL 244



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 38/129 (29%), Positives = 69/129 (53%)
 Frame = +3

Query: 45  LYKQMLDADVRPSGHTFMYLIKALTPQMCILEGEEVHSHVVKFGFGYSQYVSSALVGFYV 224
           L+ QM +A V P+  T + +I A      +  G++V S++ + G   S  + +ALV  Y+
Sbjct: 218 LFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYM 277

Query: 225 ACGNVNRGRRLFDEMCEPGLILWTSMIRAYVCVNCPKDALEVFGKMREVGIMPDPVALAT 404
            CG++   R++FDE     L+++ +++  YV      D L +  +M + G  PD V + +
Sbjct: 278 KCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLS 337

Query: 405 IVSACTLLG 431
            ++AC  LG
Sbjct: 338 TIAACAQLG 346



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 31/162 (19%)
 Frame = +3

Query: 39  LLLYKQMLDADVRPSGHTFMYLIKALTPQMCILEGEEVHSHVVKFGFGYSQYVSSALVGF 218
           L++  +ML    RP   T +  I A      +  G+  H++V++ G      +S+A++  
Sbjct: 317 LVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDM 376

Query: 219 YVACG-------------------------------NVNRGRRLFDEMCEPGLILWTSMI 305
           Y+ CG                               ++    R+FDEM E  L+ W +MI
Sbjct: 377 YMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMI 436

Query: 306 RAYVCVNCPKDALEVFGKMREVGIMPDPVALATIVSACTLLG 431
            A V V+  ++A+E+F +M+  GI  D V +  I SAC  LG
Sbjct: 437 GALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLG 478


>ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512083|gb|AES93706.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  105 bits (261), Expect = 5e-21
 Identities = 54/138 (39%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
 Frame = +3

Query: 18  SGAKCSPLLLYKQMLDA-DVRPSGHTFMYLIKALTPQMCILEGEEVHSHVVKFGFGYSQY 194
           SG     + +Y  M+    + P   TF +L+ A +  M   EG +VH  VVK G     +
Sbjct: 99  SGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLF 158

Query: 195 VSSALVGFYVACGNVNRGRRLFDEMCEPGLILWTSMIRAYVCVNCPKDALEVFGKMREVG 374
           V+++L+ FY ACG V+ GR++FDEM E  ++ WTS+I  Y  VN  K+A+ +F +M EVG
Sbjct: 159 VANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVG 218

Query: 375 IMPDPVALATIVSACTLL 428
           + P+PV +   +SAC  L
Sbjct: 219 VEPNPVTMVCAISACAKL 236



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 34/129 (26%), Positives = 67/129 (51%)
 Frame = +3

Query: 45  LYKQMLDADVRPSGHTFMYLIKALTPQMCILEGEEVHSHVVKFGFGYSQYVSSALVGFYV 224
           L+ +M++  V P+  T +  I A      +  G++V + + + G   +  V +AL+  Y+
Sbjct: 210 LFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYM 269

Query: 225 ACGNVNRGRRLFDEMCEPGLILWTSMIRAYVCVNCPKDALEVFGKMREVGIMPDPVALAT 404
            CG++   R +FDE  +  L+++ +++  YV      + L V  +M + G  PD V + +
Sbjct: 270 KCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLS 329

Query: 405 IVSACTLLG 431
            ++AC  LG
Sbjct: 330 TIAACAQLG 338


>ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  102 bits (254), Expect = 3e-20
 Identities = 51/130 (39%), Positives = 78/130 (60%)
 Frame = +3

Query: 39  LLLYKQMLDADVRPSGHTFMYLIKALTPQMCILEGEEVHSHVVKFGFGYSQYVSSALVGF 218
           L LY +ML A++RP+ +TF  ++K       I  G+E+H+HV++FGF     V +AL+  
Sbjct: 183 LNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITM 242

Query: 219 YVACGNVNRGRRLFDEMCEPGLILWTSMIRAYVCVNCPKDALEVFGKMREVGIMPDPVAL 398
           YV CG+++  R LFD+M +   I W +MI  Y       + LE+F  MRE+ + PD + +
Sbjct: 243 YVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITM 302

Query: 399 ATIVSACTLL 428
            T+ SAC LL
Sbjct: 303 TTVASACELL 312



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 34/131 (25%), Positives = 70/131 (53%)
 Frame = +3

Query: 39  LLLYKQMLDADVRPSGHTFMYLIKALTPQMCILEGEEVHSHVVKFGFGYSQYVSSALVGF 218
           LL ++QM ++ ++P+  T + ++ A      ++ G+E+H+H ++ G G+  ++ +A++  
Sbjct: 486 LLFFRQMKES-MKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDM 544

Query: 219 YVACGNVNRGRRLFDEMCEPGLILWTSMIRAYVCVNCPKDALEVFGKMREVGIMPDPVAL 398
           YV CG        F+   +  +  W  ++  Y      K A+E+F KM E+ I PD +  
Sbjct: 545 YVRCGRKVPALNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITF 603

Query: 399 ATIVSACTLLG 431
            +++ AC+  G
Sbjct: 604 ISLLCACSKSG 614



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 39/138 (28%), Positives = 64/138 (46%)
 Frame = +3

Query: 18  SGAKCSPLLLYKQMLDADVRPSGHTFMYLIKALTPQMCILEGEEVHSHVVKFGFGYSQYV 197
           +G     L L+  M +  V P   T   +  A         G  VH +VVK  FG    +
Sbjct: 277 NGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISM 336

Query: 198 SSALVGFYVACGNVNRGRRLFDEMCEPGLILWTSMIRAYVCVNCPKDALEVFGKMREVGI 377
           +++L+  Y + G +     +F  M    ++ WT+MI + V    P  A+E +  M   GI
Sbjct: 337 NNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGI 396

Query: 378 MPDPVALATIVSACTLLG 431
           +PD + L +++SAC  +G
Sbjct: 397 LPDEITLVSVLSACACIG 414