BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00038398
         (462 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD15377.1| putative non-LTR retroelement reverse transcripta...   147   9e-34
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...   141   5e-32
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...   141   5e-32
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...   141   5e-32
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   140   1e-31

>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1044

 Score =  147 bits (371), Expect = 9e-34
 Identities = 72/153 (47%), Positives = 94/153 (61%)
 Frame = +1

Query: 1   WRDWVNQCISTTTYSFKLNGSPTGLVKPERGIRQGDPLSPFLFIICAEVLSRLIAKAEAD 180
           W  W+ QCI+T +YSF LNGS  G V PERG+RQGDPLSPFLFIIC+EVLS L  KA+ D
Sbjct: 428 WISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLD 487

Query: 181 NKIHGIKISRGDTPITHLLFADDSFIFCRGNIEESHNLRDILETFQRISGQEINHQKSGI 360
             + G+++S+G+  + HLLFADD+  FCR +++       IL+ ++  SGQ IN  KS I
Sbjct: 488 GSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSKSAI 547

Query: 361 FFSRNTHPRHQXXXXXXXXXXXXXXXDRYLGAP 459
            FSR T    +                +YLG P
Sbjct: 548 TFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLP 580


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score =  141 bits (356), Expect = 5e-32
 Identities = 68/155 (43%), Positives = 96/155 (61%), Gaps = 3/155 (1%)
 Frame = +1

Query: 7    DWVN---QCISTTTYSFKLNGSPTGLVKPERGIRQGDPLSPFLFIICAEVLSRLIAKAEA 177
            DWVN   +C+ST TY  ++NG  +    PERG+RQGDPLSP+LF++CAE  S L++K E 
Sbjct: 802  DWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEE 861

Query: 178  DNKIHGIKISRGDTPITHLLFADDSFIFCRGNIEESHNLRDILETFQRISGQEINHQKSG 357
            + ++HGI+I +G   ++HLLFADDS I CR N  E+  L+ IL+ ++  SGQ IN  KS 
Sbjct: 862  EGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSA 921

Query: 358  IFFSRNTHPRHQXXXXXXXXXXXXXXXDRYLGAPL 462
            + FS NT    +               ++YLG P+
Sbjct: 922  VMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPV 956


>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score =  141 bits (356), Expect = 5e-32
 Identities = 68/155 (43%), Positives = 96/155 (61%), Gaps = 3/155 (1%)
 Frame = +1

Query: 7    DWVN---QCISTTTYSFKLNGSPTGLVKPERGIRQGDPLSPFLFIICAEVLSRLIAKAEA 177
            DWVN   +C+ST TY  ++NG  +    PERG+RQGDPLSP+LF++CAE  S L++K E 
Sbjct: 830  DWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEE 889

Query: 178  DNKIHGIKISRGDTPITHLLFADDSFIFCRGNIEESHNLRDILETFQRISGQEINHQKSG 357
            + ++HGI+I +G   ++HLLFADDS I CR N  E+  L+ IL+ ++  SGQ IN  KS 
Sbjct: 890  EGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSA 949

Query: 358  IFFSRNTHPRHQXXXXXXXXXXXXXXXDRYLGAPL 462
            + FS NT    +               ++YLG P+
Sbjct: 950  VMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPV 984


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score =  141 bits (356), Expect = 5e-32
 Identities = 68/155 (43%), Positives = 96/155 (61%), Gaps = 3/155 (1%)
 Frame = +1

Query: 7    DWVN---QCISTTTYSFKLNGSPTGLVKPERGIRQGDPLSPFLFIICAEVLSRLIAKAEA 177
            DWVN   +C+ST TY  ++NG  +    PERG+RQGDPLSP+LF++CAE  S L++K E 
Sbjct: 798  DWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEE 857

Query: 178  DNKIHGIKISRGDTPITHLLFADDSFIFCRGNIEESHNLRDILETFQRISGQEINHQKSG 357
            + ++HGI+I +G   ++HLLFADDS I CR N  E+  L+ IL+ ++  SGQ IN  KS 
Sbjct: 858  EGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSA 917

Query: 358  IFFSRNTHPRHQXXXXXXXXXXXXXXXDRYLGAPL 462
            + FS NT    +               ++YLG P+
Sbjct: 918  VMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPV 952


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  140 bits (352), Expect = 1e-31
 Identities = 68/155 (43%), Positives = 95/155 (61%), Gaps = 3/155 (1%)
 Frame = +1

Query: 7    DWVN---QCISTTTYSFKLNGSPTGLVKPERGIRQGDPLSPFLFIICAEVLSRLIAKAEA 177
            DWVN   +C+ST TY  ++NG  +    P RG+RQGDPLSP+LF++CAE  S L++K E 
Sbjct: 857  DWVNLIMKCVSTVTYRIRVNGELSESFSPGRGLRQGDPLSPYLFLLCAEGFSALLSKTEE 916

Query: 178  DNKIHGIKISRGDTPITHLLFADDSFIFCRGNIEESHNLRDILETFQRISGQEINHQKSG 357
            + ++HGI+I +G   ++HLLFADDS I CR N  E+  L+ IL+ ++  SGQ IN  KS 
Sbjct: 917  EGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSA 976

Query: 358  IFFSRNTHPRHQXXXXXXXXXXXXXXXDRYLGAPL 462
            + FS NT    +               +RYLG P+
Sbjct: 977  VMFSPNTSSLEKRAVMAALNMQRETTNERYLGLPV 1011