BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00038287
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...   103   1e-20
dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis...   103   1e-20
ref|XP_004155998.1| PREDICTED: DNA-directed RNA polymerase III s...   103   2e-20
ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III s...   103   2e-20
ref|NP_199327.4| DNA-directed RNA polymerase III subunit C2 [Ara...   101   6e-20

>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus
           communis] gi|223535120|gb|EEF36800.1| DNA-directed RNA
           polymerase III subunit, putative [Ricinus communis]
          Length = 1139

 Score =  103 bits (258), Expect = 1e-20
 Identities = 51/70 (72%), Positives = 56/70 (80%)
 Frame = +3

Query: 147 EPPIDKPFLAAPVKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFINTGIKKIVNANNLTTS 326
           E  IDK  L AP+KSAVDKFQLLPEFLKVRGLVKQHLDSFNYF+N GIKKIV AN+   S
Sbjct: 19  EQLIDKQKLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRANDRIVS 78

Query: 327 VIDASAYLRY 356
            +D   YLR+
Sbjct: 79  TVDPGIYLRF 88


>dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1194

 Score =  103 bits (257), Expect = 1e-20
 Identities = 54/97 (55%), Positives = 68/97 (70%)
 Frame = +3

Query: 66  QLSDCLVLLIWVFELDDTSI*TMGIHEEPPIDKPFLAAPVKSAVDKFQLLPEFLKVRGLV 245
           Q++D L+  +    LD   +     +++  IDK  L+AP+KS  DKFQL+PEFLKVRGLV
Sbjct: 10  QITDSLIAKLRAMGLDQEDLDLT--NDDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLV 67

Query: 246 KQHLDSFNYFINTGIKKIVNANNLTTSVIDASAYLRY 356
           KQHLDSFNYFIN GI KIV AN+  TS +D S YLR+
Sbjct: 68  KQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRF 104


>ref|XP_004155998.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like,
           partial [Cucumis sativus]
          Length = 392

 Score =  103 bits (256), Expect = 2e-20
 Identities = 50/68 (73%), Positives = 56/68 (82%)
 Frame = +3

Query: 156 IDKPFLAAPVKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFINTGIKKIVNANNLTTSVID 335
           IDK F+  P+KSAVDKFQLLPEFLKVRGLVKQHLDSFNYF+NT IKKIV AN+   S  D
Sbjct: 26  IDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTD 85

Query: 336 ASAYLRYI 359
            S YLR++
Sbjct: 86  PSIYLRFL 93


>ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Cucumis sativus]
          Length = 1158

 Score =  103 bits (256), Expect = 2e-20
 Identities = 50/68 (73%), Positives = 56/68 (82%)
 Frame = +3

Query: 156 IDKPFLAAPVKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFINTGIKKIVNANNLTTSVID 335
           IDK F+  P+KSAVDKFQLLPEFLKVRGLVKQHLDSFNYF+NT IKKIV AN+   S  D
Sbjct: 26  IDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTD 85

Query: 336 ASAYLRYI 359
            S YLR++
Sbjct: 86  PSIYLRFL 93


>ref|NP_199327.4| DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana]
           gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase
           III subunit C2 [Arabidopsis thaliana]
          Length = 1161

 Score =  101 bits (252), Expect = 6e-20
 Identities = 49/67 (73%), Positives = 55/67 (82%)
 Frame = +3

Query: 156 IDKPFLAAPVKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFINTGIKKIVNANNLTTSVID 335
           IDK  L+AP+KS  DKFQL+PEFLKVRGLVKQHLDSFNYFIN GI KIV AN+  TS +D
Sbjct: 17  IDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVD 76

Query: 336 ASAYLRY 356
            S YLR+
Sbjct: 77  PSIYLRF 83