BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00037329
         (376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               81   1e-13
gb|ABA97658.1| retrotransposon protein, putative, Ty1-copia subc...    78   9e-13
gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. ...    74   1e-11
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...    74   1e-11
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...    73   2e-11

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 32/49 (65%), Positives = 44/49 (89%)
 Frame = +2

Query: 5   NKLQARSKMCVFIGYSLHHKGYKCLDPNTGKIFLSRHVLFDESRFPYID 151
           +KLQ RSK CVF+GYSL+H+GY+C DP++G+++LSRHVLFDES FP+ +
Sbjct: 640 SKLQLRSKRCVFLGYSLNHQGYRCFDPSSGRVYLSRHVLFDESSFPFTE 688


>gb|ABA97658.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1597

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 30/47 (63%), Positives = 39/47 (82%)
 Frame = +2

Query: 5   NKLQARSKMCVFIGYSLHHKGYKCLDPNTGKIFLSRHVLFDESRFPY 145
           +KL  RS MC+F+GY LHHKGY+CLDP+T ++ +SRHV+FDE  FPY
Sbjct: 853 HKLSPRSTMCIFLGYPLHHKGYRCLDPSTNRVIISRHVVFDEHSFPY 899


>gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. pekinensis]
          Length = 2301

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 30/50 (60%), Positives = 41/50 (82%)
 Frame = +2

Query: 2   KNKLQARSKMCVFIGYSLHHKGYKCLDPNTGKIFLSRHVLFDESRFPYID 151
           +NKL  RS  CVF+GYS  +KGY+CL P TG++++SRHV+FDES+FP+ D
Sbjct: 704 QNKLDPRSLQCVFLGYSEKYKGYRCLLPATGRVYISRHVIFDESKFPFAD 753


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1447

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 29/47 (61%), Positives = 40/47 (85%)
 Frame = +2

Query: 5   NKLQARSKMCVFIGYSLHHKGYKCLDPNTGKIFLSRHVLFDESRFPY 145
           +KLQ RSK C F+GYS  HKG+KCLDP+TG++++SR V+FDE+ FP+
Sbjct: 696 HKLQFRSKQCTFLGYSTLHKGFKCLDPSTGRVYISRDVIFDETNFPF 742


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108708884|gb|ABF96679.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1437

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 29/48 (60%), Positives = 41/48 (85%)
 Frame = +2

Query: 2   KNKLQARSKMCVFIGYSLHHKGYKCLDPNTGKIFLSRHVLFDESRFPY 145
           K+KLQ RS  C F+GYS  HKG+KCLDP+TG++++SR V+FDE++FP+
Sbjct: 693 KHKLQFRSTTCTFLGYSTLHKGFKCLDPSTGRVYISRDVVFDETQFPF 740