BLASTX nr result

ID: Cimicifuga21_contig00037300 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00037300
         (461 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32614.3| unnamed protein product [Vitis vinifera]              231   3e-59
ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containi...   231   3e-59
ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containi...   221   5e-56
ref|XP_002525184.1| pentatricopeptide repeat-containing protein,...   216   2e-54
ref|XP_002322855.1| predicted protein [Populus trichocarpa] gi|2...   214   4e-54

>emb|CBI32614.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  231 bits (590), Expect = 3e-59
 Identities = 112/151 (74%), Positives = 132/151 (87%)
 Frame = -2

Query: 460 VSRLAASADDGPVDALKLFKSITQRIRRLADPAIAMDARPDTAAYNAVLNACANIGDNKK 281
           VSRLAAS DDGP++ALKLF S+T+RI R  D  +  D+RPDTAAYNAVLNACAN+GD K+
Sbjct: 199 VSRLAASGDDGPLEALKLFDSVTRRIHRFTDATLVADSRPDTAAYNAVLNACANLGDTKR 258

Query: 280 FLQLFDEMSDFGAKADVLTYNILIKLCARAGRKDLLVFVLVKILDEGIVPCITTLHSLVA 101
           FLQ+F+EM+  GA+ DVLTYN++IKLCAR  RKDLLVFVL +ILD+GI  C+TTLHSLVA
Sbjct: 259 FLQVFEEMTQLGAEPDVLTYNVMIKLCARVDRKDLLVFVLERILDKGIQLCMTTLHSLVA 318

Query: 100 AYIGFNDLETAEKLVQAMREGRQDLCEILRE 8
           AY+GF DLETAEKLVQAMREGRQDLC+ILR+
Sbjct: 319 AYVGFGDLETAEKLVQAMREGRQDLCKILRD 349


>ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Vitis vinifera]
          Length = 749

 Score =  231 bits (590), Expect = 3e-59
 Identities = 112/151 (74%), Positives = 132/151 (87%)
 Frame = -2

Query: 460 VSRLAASADDGPVDALKLFKSITQRIRRLADPAIAMDARPDTAAYNAVLNACANIGDNKK 281
           VSRLAAS DDGP++ALKLF S+T+RI R  D  +  D+RPDTAAYNAVLNACAN+GD K+
Sbjct: 191 VSRLAASGDDGPLEALKLFDSVTRRIHRFTDATLVADSRPDTAAYNAVLNACANLGDTKR 250

Query: 280 FLQLFDEMSDFGAKADVLTYNILIKLCARAGRKDLLVFVLVKILDEGIVPCITTLHSLVA 101
           FLQ+F+EM+  GA+ DVLTYN++IKLCAR  RKDLLVFVL +ILD+GI  C+TTLHSLVA
Sbjct: 251 FLQVFEEMTQLGAEPDVLTYNVMIKLCARVDRKDLLVFVLERILDKGIQLCMTTLHSLVA 310

Query: 100 AYIGFNDLETAEKLVQAMREGRQDLCEILRE 8
           AY+GF DLETAEKLVQAMREGRQDLC+ILR+
Sbjct: 311 AYVGFGDLETAEKLVQAMREGRQDLCKILRD 341


>ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Cucumis sativus]
           gi|449483612|ref|XP_004156638.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g09650,
           chloroplastic-like [Cucumis sativus]
          Length = 736

 Score =  221 bits (563), Expect = 5e-56
 Identities = 106/151 (70%), Positives = 129/151 (85%)
 Frame = -2

Query: 460 VSRLAASADDGPVDALKLFKSITQRIRRLADPAIAMDARPDTAAYNAVLNACANIGDNKK 281
           VSRLAAS DDGP +A+KLF  +TQR+RR ADP I  D+RPDTAAYN VLNACAN+G  +K
Sbjct: 178 VSRLAASPDDGPAEAIKLFSLVTQRLRRFADPTITADSRPDTAAYNGVLNACANMGAYEK 237

Query: 280 FLQLFDEMSDFGAKADVLTYNILIKLCARAGRKDLLVFVLVKILDEGIVPCITTLHSLVA 101
           FLQLF+EM +FGA+ DVLTYN++IKLCARA RKDL+V+VL  IL + I  C+TTLHS+VA
Sbjct: 238 FLQLFEEMEEFGAEPDVLTYNVMIKLCARANRKDLIVYVLEAILAKDIPMCMTTLHSVVA 297

Query: 100 AYIGFNDLETAEKLVQAMREGRQDLCEILRE 8
           AY+GF DLETAEK+VQAMREG++D+C ILR+
Sbjct: 298 AYVGFGDLETAEKVVQAMREGKRDICRILRD 328


>ref|XP_002525184.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535481|gb|EEF37150.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 740

 Score =  216 bits (550), Expect = 2e-54
 Identities = 102/151 (67%), Positives = 128/151 (84%)
 Frame = -2

Query: 460 VSRLAASADDGPVDALKLFKSITQRIRRLADPAIAMDARPDTAAYNAVLNACANIGDNKK 281
           +SRL++S DDGP  A+KLF SIT+R+RR  D A+  D+ PDTAA+N+VLNACAN+GD K 
Sbjct: 171 ISRLSSSPDDGPQQAIKLFNSITRRVRRFNDAALVADSNPDTAAFNSVLNACANLGDGKM 230

Query: 280 FLQLFDEMSDFGAKADVLTYNILIKLCARAGRKDLLVFVLVKILDEGIVPCITTLHSLVA 101
           FLQLFD+MS+FGA+ D+LTYN++IKLCAR  RKDLLVFVL +++ + I  C+TTLHSLVA
Sbjct: 231 FLQLFDQMSEFGAEPDILTYNVMIKLCARCDRKDLLVFVLERVIQKRIPLCMTTLHSLVA 290

Query: 100 AYIGFNDLETAEKLVQAMREGRQDLCEILRE 8
           AY+GF DLETAE + QAMREGR+DLC+ILRE
Sbjct: 291 AYVGFGDLETAEIMAQAMREGRRDLCKILRE 321


>ref|XP_002322855.1| predicted protein [Populus trichocarpa] gi|222867485|gb|EEF04616.1|
           predicted protein [Populus trichocarpa]
          Length = 751

 Score =  214 bits (546), Expect = 4e-54
 Identities = 101/152 (66%), Positives = 129/152 (84%)
 Frame = -2

Query: 460 VSRLAASADDGPVDALKLFKSITQRIRRLADPAIAMDARPDTAAYNAVLNACANIGDNKK 281
           +SRLA++ D GP  ALKLF +IT+R+RR +D  +  D+RPDTAA+N VLNACAN+GD K 
Sbjct: 186 LSRLASAPDGGPTRALKLFNTITRRVRRFSDVTMVADSRPDTAAFNNVLNACANLGDGKM 245

Query: 280 FLQLFDEMSDFGAKADVLTYNILIKLCARAGRKDLLVFVLVKILDEGIVPCITTLHSLVA 101
           FL+LF+EM DFG + D+LTYNI+IKLCAR  RKDLLVFVL +++++GI  C+TTLHSLVA
Sbjct: 246 FLKLFEEMPDFGLEPDILTYNIMIKLCARCNRKDLLVFVLERVIEKGIPLCMTTLHSLVA 305

Query: 100 AYIGFNDLETAEKLVQAMREGRQDLCEILRES 5
           AY+GF DLET E++VQAMREGR+DLC+ILRE+
Sbjct: 306 AYVGFGDLETVERMVQAMREGRRDLCKILREA 337


Top