BLASTX nr result
ID: Cimicifuga21_contig00035945
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00035945
(356 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP53215.2| retrotransposon protein, putative, unclassified, ... 70 1e-12
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 68 3e-12
gb|AAP54617.2| retrotransposon protein, putative, unclassified [... 68 3e-12
gb|EEC79647.1| hypothetical protein OsI_20882 [Oryza sativa Indi... 67 8e-12
gb|EEE55075.1| hypothetical protein OsJ_02804 [Oryza sativa Japo... 67 1e-11
>gb|AAP53215.2| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1701
Score = 70.5 bits (171), Expect(2) = 1e-12
Identities = 36/77 (46%), Positives = 48/77 (62%)
Frame = -1
Query: 275 KKSFYLKSWEHICLPKRFGGLGIREFSKSNIAFLSRIVWRLLSNPSDLWS*VLKAKYFSK 96
KK L+SW+ IC P GGLGIR+ N + L + WR+L+NP+DL S VLK+KYF
Sbjct: 1341 KKGMALRSWKDICKPVSEGGLGIRDLMAVNKSILVQSAWRILTNPNDLLSSVLKSKYFPN 1400
Query: 95 TKATQATSPKPDSSWFW 45
T +A + P S+ FW
Sbjct: 1401 TSFWKARTDMPKSA-FW 1416
Score = 26.9 bits (58), Expect(2) = 1e-12
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 340 KKITSKLNAIQRDFWW 293
KK+ +KL AI R FWW
Sbjct: 1317 KKLIAKLTAIIRKFWW 1332
>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
Japonica Group]
Length = 1382
Score = 68.2 bits (165), Expect(2) = 3e-12
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = -1
Query: 275 KKSFYLKSWEHICLPKRFGGLGIREFSKSNIAFLSRIVWRLLSNPSDLWS*VLKAKYFSK 96
KK + KSW + PK GG+G REF+ N A L R WRLL++P L S VLK +YF
Sbjct: 848 KKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPN 907
Query: 95 TKATQATSPK-PDSSW 51
+ +A PK P +W
Sbjct: 908 SSFWEAAQPKSPSFTW 923
Score = 28.1 bits (61), Expect(2) = 3e-12
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 355 CFVIPKKITSKLNAIQRDFWWGKKNNGK 272
CF IP I K+ D WWG ++ K
Sbjct: 822 CFRIPVSICEKMKTCIADHWWGFEDGKK 849
>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
protein OsJ_32156 [Oryza sativa Japonica Group]
Length = 1339
Score = 68.2 bits (165), Expect(2) = 3e-12
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = -1
Query: 275 KKSFYLKSWEHICLPKRFGGLGIREFSKSNIAFLSRIVWRLLSNPSDLWS*VLKAKYFSK 96
KK + KSW + PK GG+G REF+ N A L R WRLL++P L S VLK +YF
Sbjct: 805 KKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPN 864
Query: 95 TKATQATSPK-PDSSW 51
+ +A PK P +W
Sbjct: 865 SSFWEAAQPKSPSFTW 880
Score = 28.1 bits (61), Expect(2) = 3e-12
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 355 CFVIPKKITSKLNAIQRDFWWGKKNNGK 272
CF IP I K+ D WWG ++ K
Sbjct: 779 CFRIPVSICEKMKTCIADHWWGFEDGKK 806
>gb|EEC79647.1| hypothetical protein OsI_20882 [Oryza sativa Indica Group]
Length = 1784
Score = 66.6 bits (161), Expect(2) = 8e-12
Identities = 44/98 (44%), Positives = 56/98 (57%)
Frame = -1
Query: 302 FLVGEEKQWKKSFYLKSWEHICLPKRFGGLGIREFSKSNIAFLSRIVWRLLSNPSDLWS* 123
F G EK +K+ + KSWE + PK GGLG R+F N A L+R WRL+ NP L +
Sbjct: 830 FWWGVEKGKRKTHW-KSWECLTRPKSNGGLGFRDFRLFNQALLARQAWRLIVNPDSLCAR 888
Query: 122 VLKAKYFSKTKATQATSPKPDSSWFWKGCQKGILSILK 9
VLKAKYF TS ++S WK + G LS+LK
Sbjct: 889 VLKAKYFPNGSLVD-TSFGGNASPVWKAIEYG-LSLLK 924
Score = 66.6 bits (161), Expect(2) = 8e-12
Identities = 44/98 (44%), Positives = 56/98 (57%)
Frame = -1
Query: 302 FLVGEEKQWKKSFYLKSWEHICLPKRFGGLGIREFSKSNIAFLSRIVWRLLSNPSDLWS* 123
F G EK +K+ + KSWE + PK GGLG R+F N A L+R WRL+ NP L +
Sbjct: 1528 FWWGVEKGKRKTHW-KSWECLTRPKSNGGLGFRDFRLFNQALLARQAWRLIVNPDSLCAR 1586
Query: 122 VLKAKYFSKTKATQATSPKPDSSWFWKGCQKGILSILK 9
VLKAKYF TS ++S WK + G LS+LK
Sbjct: 1587 VLKAKYFPNGSLVD-TSFGGNASPVWKAIEYG-LSLLK 1622
Score = 28.1 bits (61), Expect(2) = 8e-12
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 352 FVIPKKITSKLNAIQRDFWWG 290
F +P+ + +L + R+FWWG
Sbjct: 813 FKLPESVCEELTKLTRNFWWG 833
Score = 28.1 bits (61), Expect(2) = 8e-12
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 352 FVIPKKITSKLNAIQRDFWWG 290
F +P+ + +L + R+FWWG
Sbjct: 1511 FKLPESVCEELTKLTRNFWWG 1531
>gb|EEE55075.1| hypothetical protein OsJ_02804 [Oryza sativa Japonica Group]
Length = 287
Score = 66.6 bits (161), Expect(2) = 1e-11
Identities = 44/98 (44%), Positives = 56/98 (57%)
Frame = -1
Query: 302 FLVGEEKQWKKSFYLKSWEHICLPKRFGGLGIREFSKSNIAFLSRIVWRLLSNPSDLWS* 123
F G EK +K+ + KSWE + PK GGLG R+F N A L+R WRL+ NP L +
Sbjct: 104 FWWGVEKGKRKTHW-KSWECLTRPKSNGGLGFRDFRLFNQALLARQAWRLIVNPDSLCAR 162
Query: 122 VLKAKYFSKTKATQATSPKPDSSWFWKGCQKGILSILK 9
VLKAKYF TS ++S WK + G LS+LK
Sbjct: 163 VLKAKYFPNGSLVD-TSFGGNASPVWKAIEYG-LSLLK 198
Score = 27.7 bits (60), Expect(2) = 1e-11
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 352 FVIPKKITSKLNAIQRDFWWG 290
F +P+ + +L + R+FWWG
Sbjct: 87 FNLPESVCEELTKLTRNFWWG 107