BLASTX nr result

ID: Cimicifuga21_contig00035873 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00035873
         (581 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004159095.1| PREDICTED: LOW QUALITY PROTEIN: general tran...    59   5e-07
ref|XP_004142476.1| PREDICTED: general transcription factor 3C p...    59   5e-07
emb|CBI24753.3| unnamed protein product [Vitis vinifera]               59   6e-07
ref|XP_002323927.1| predicted protein [Populus trichocarpa] gi|2...    58   1e-06
ref|XP_002275875.1| PREDICTED: transcription factor tau subunit ...    55   9e-06

>ref|XP_004159095.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor 3C
           polypeptide 5-like [Cucumis sativus]
          Length = 592

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 28/61 (45%), Positives = 38/61 (62%)
 Frame = +1

Query: 127 YQVDADDGDFPLHPFSYPVGENISKNYLQELFGSFPPTEAGGNNKDQDAECSDGEYQIFE 306
           + +  DD +F LH  SY   E++S+ +LQELFGSFP  +  G     D + SD EYQI+E
Sbjct: 521 FNMVGDDDEFSLHSHSYLGMEDVSRTHLQELFGSFPSLDEDGEKMMDDGDGSDEEYQIYE 580

Query: 307 Q 309
           Q
Sbjct: 581 Q 581


>ref|XP_004142476.1| PREDICTED: general transcription factor 3C polypeptide 5-like
           [Cucumis sativus]
          Length = 556

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 28/61 (45%), Positives = 38/61 (62%)
 Frame = +1

Query: 127 YQVDADDGDFPLHPFSYPVGENISKNYLQELFGSFPPTEAGGNNKDQDAECSDGEYQIFE 306
           + +  DD +F LH  SY   E++S+ +LQELFGSFP  +  G     D + SD EYQI+E
Sbjct: 485 FNMVGDDDEFSLHSHSYLGMEDVSRTHLQELFGSFPSLDEDGEKMMDDGDGSDEEYQIYE 544

Query: 307 Q 309
           Q
Sbjct: 545 Q 545


>emb|CBI24753.3| unnamed protein product [Vitis vinifera]
          Length = 597

 Score = 58.9 bits (141), Expect = 6e-07
 Identities = 32/56 (57%), Positives = 40/56 (71%)
 Frame = +1

Query: 142 DDGDFPLHPFSYPVGENISKNYLQELFGSFPPTEAGGNNKDQDAECSDGEYQIFEQ 309
           +D +  L   SY   ENIS++YLQ LFGSF  T+AGG  + QDA+ SDGEYQI+EQ
Sbjct: 531 EDDEDSLQSRSYLDAENISRDYLQGLFGSFSFTKAGG-GEVQDADTSDGEYQIYEQ 585


>ref|XP_002323927.1| predicted protein [Populus trichocarpa] gi|222866929|gb|EEF04060.1|
           predicted protein [Populus trichocarpa]
          Length = 527

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
 Frame = +1

Query: 130 QVDADDGD--FPLHPFSYPVGENISKNYLQELFGSFPPTEAGGNNKDQDAECSDGEYQIF 303
           ++D+DDG+  F ++       EN S +YLQ+L GSFP  +  G+ K    E SDGEYQI+
Sbjct: 454 ELDSDDGEEEFDVYGMDSADMENTSTSYLQQLLGSFPSMDTNGDKKQDGGESSDGEYQIY 513

Query: 304 EQ 309
           EQ
Sbjct: 514 EQ 515


>ref|XP_002275875.1| PREDICTED: transcription factor tau subunit sfc1-like [Vitis
           vinifera]
          Length = 568

 Score = 55.1 bits (131), Expect = 9e-06
 Identities = 28/41 (68%), Positives = 34/41 (82%)
 Frame = +1

Query: 187 ENISKNYLQELFGSFPPTEAGGNNKDQDAECSDGEYQIFEQ 309
           ENIS++YLQ LFGSF  T+AGG  + QDA+ SDGEYQI+EQ
Sbjct: 517 ENISRDYLQGLFGSFSFTKAGG-GEVQDADTSDGEYQIYEQ 556


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