BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00035847
         (568 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...    85   4e-25
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...    81   8e-24
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...    77   8e-24
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    67   3e-21
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...    70   9e-20

>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score = 85.1 bits (209), Expect(4) = 4e-25
 Identities = 41/105 (39%), Positives = 70/105 (66%)
 Frame = +1

Query: 178 SLLLFIIIMEILSKLINEKEIQGKIHGIASSKIGPKISHLLFANDSIIFSRATIDDAHEI 357
           S  LFI++ +  S+++ +K +  +IHG  +S+ GP+ISHLLFA+DS++F+RAT  +   I
Sbjct: 647 SPFLFILVADAFSQMVKQKVVSKEIHGAKASRNGPEISHLLFADDSLLFTRATRQECLTI 706

Query: 358 IDTLKTFEAITRQTINHEKSGVIFSKNFYHKHSKTLRNILNIKSL 492
           +D L  +EA + Q IN+EKS V FS+    +  + L  +L+++ +
Sbjct: 707 VDILNKYEAASGQKINYEKSEVSFSRGVSCEKKEELITLLHMRQV 751



 Score = 37.4 bits (85), Expect(4) = 4e-25
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 2   FDRVNWKSLPVMLSRLGFDGKWCQIISNCISS 97
           +DRV W  L  +L  +GFDG+W  ++ +C+++
Sbjct: 588 YDRVEWGFLRKLLLTMGFDGRWVNLVMSCVAT 619



 Score = 32.7 bits (73), Expect(4) = 4e-25
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +3

Query: 75  LFLTAFPRVNFSILVNGSPEGYFYFSKGIRQGDPLS 182
           L ++    V++S ++NG   G    S+G+RQGDPLS
Sbjct: 612 LVMSCVATVSYSFIINGRVCGSVTPSRGLRQGDPLS 647



 Score = 24.6 bits (52), Expect(4) = 4e-25
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 510 KYLGAPLFLGHSKTVMF 560
           KYLG P   G SK V+F
Sbjct: 756 KYLGIPALCGRSKKVLF 772


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 80.9 bits (198), Expect(4) = 8e-24
 Identities = 40/102 (39%), Positives = 63/102 (61%)
 Frame = +1

Query: 187 LFIIIMEILSKLINEKEIQGKIHGIASSKIGPKISHLLFANDSIIFSRATIDDAHEIIDT 366
           LFI++ +  SK+I  K    ++HG  +S+ GP+ISHL FA+DS++F+RA   +   I+D 
Sbjct: 647 LFIMVADAFSKMIQRKVQDKQLHGAKASRSGPEISHLFFADDSLLFTRANRQECTIIVDI 706

Query: 367 LKTFEAITRQTINHEKSGVIFSKNFYHKHSKTLRNILNIKSL 492
           L  +E  + Q IN+EKS V +S+         L NILN++ +
Sbjct: 707 LNQYELASGQKINYEKSEVSYSRGVSVSQKDELTNILNMRQV 748



 Score = 35.4 bits (80), Expect(4) = 8e-24
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 2   FDRVNWKSLPVMLSRLGFDGKWCQIISNCISS 97
           +DRV W  L  +L  +GFDG+W  +I   +SS
Sbjct: 585 YDRVEWGFLRKLLLTMGFDGRWVNLIMEFVSS 616



 Score = 32.3 bits (72), Expect(4) = 8e-24
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 99  VNFSILVNGSPEGYFYFSKGIRQGDPLS 182
           V +S ++NGS  G    ++G+RQGDPLS
Sbjct: 617 VTYSFIINGSVCGSVVPARGLRQGDPLS 644



 Score = 26.6 bits (57), Expect(4) = 8e-24
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 507 DKYLGAPLFLGHSKTVMFDS 566
           +KYLG P   G SK  +FDS
Sbjct: 752 EKYLGIPSISGRSKKAIFDS 771


>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 77.4 bits (189), Expect(4) = 8e-24
 Identities = 40/102 (39%), Positives = 64/102 (62%)
 Frame = +1

Query: 187 LFIIIMEILSKLINEKEIQGKIHGIASSKIGPKISHLLFANDSIIFSRATIDDAHEIIDT 366
           LFI+I +  SK+I +K  + ++HG  +S+ GP ISHL FA+ S++F+RA+  +   I++ 
Sbjct: 647 LFILIADAFSKMIQKKVQEKQLHGAKASRSGPVISHLFFADVSLLFTRASRQECAIIVEI 706

Query: 367 LKTFEAITRQTINHEKSGVIFSKNFYHKHSKTLRNILNIKSL 492
           L  +E  + Q IN++KS V FSK       + L NIL +K +
Sbjct: 707 LNLYEQASGQKINYDKSEVSFSKGVSIAQKEELSNILQMKQV 748



 Score = 40.0 bits (92), Expect(4) = 8e-24
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 2   FDRVNWKSLPVMLSRLGFDGKWCQIISNCISS 97
           +DRV W  L  +L  +GFDG+W  +I +C+SS
Sbjct: 585 YDRVEWGFLRKLLLTMGFDGRWVNLIMSCVSS 616



 Score = 30.4 bits (67), Expect(4) = 8e-24
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 75  LFLTAFPRVNFSILVNGSPEGYFYFSKGIRQGDPLS 182
           L ++    V++S ++NG   G    ++G+R GDPLS
Sbjct: 609 LIMSCVSSVSYSFIINGGVCGSVTPARGLRHGDPLS 644



 Score = 27.3 bits (59), Expect(4) = 8e-24
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 510 KYLGAPLFLGHSKTVMFDS 566
           KYLG P   G S+T +FDS
Sbjct: 753 KYLGIPSITGRSRTAIFDS 771


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score = 66.6 bits (161), Expect(4) = 3e-21
 Identities = 34/102 (33%), Positives = 58/102 (56%)
 Frame = +1

Query: 187  LFIIIMEILSKLINEKEIQGKIHGIASSKIGPKISHLLFANDSIIFSRATIDDAHEIIDT 366
            LF+   E+LS ++ + E+  +IHG+  +K    ISHLLFA+DS+ F RA+  +  ++   
Sbjct: 1005 LFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALI 1064

Query: 367  LKTFEAITRQTINHEKSGVIFSKNFYHKHSKTLRNILNIKSL 492
             K +E  + Q IN+ KS +IF +       + L  +L I ++
Sbjct: 1065 FKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNV 1106



 Score = 43.9 bits (102), Expect(4) = 3e-21
 Identities = 19/37 (51%), Positives = 26/37 (70%)
 Frame = +3

Query: 72   KLFLTAFPRVNFSILVNGSPEGYFYFSKGIRQGDPLS 182
            K  +T    V++ +L+NGSP G  + S+GIRQGDPLS
Sbjct: 966  KWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLS 1002



 Score = 32.3 bits (72), Expect(4) = 3e-21
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 2    FDRVNWKSLPVMLSRLGFDGKWCQIISNCISS 97
            +DRV W  L  ++ +LGF  +W + I  C++S
Sbjct: 943  YDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTS 974



 Score = 23.5 bits (49), Expect(4) = 3e-21
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 504  GDKYLGAPLFLGHSKTVMFD 563
            G KYLG P  LG  K  +F+
Sbjct: 1109 GGKYLGLPEQLGRRKVELFE 1128


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score = 70.5 bits (171), Expect(4) = 9e-20
 Identities = 36/100 (36%), Positives = 60/100 (60%)
 Frame = +1

Query: 187  LFIIIMEILSKLINEKEIQGKIHGIASSKIGPKISHLLFANDSIIFSRATIDDAHEIIDT 366
            LF++  E  S L+++ E +G++HGI   +  P +SHLLFA+DS+I  RA   +A ++   
Sbjct: 899  LFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTI 958

Query: 367  LKTFEAITRQTINHEKSGVIFSKNFYHKHSKTLRNILNIK 486
            L+ +E  + Q IN +KS V+FS N      + +   LN++
Sbjct: 959  LQIYEECSGQVINKDKSAVMFSPNTSSLEKRAVMAALNMQ 998



 Score = 34.3 bits (77), Expect(4) = 9e-20
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 2   FDRVNWKSLPVMLSRLGFDGKWCQIISNCISS 97
           +DRV W  L  M+ +LGF   W  +I  C+S+
Sbjct: 837 YDRVEWSFLHDMILKLGFHTDWVNLIMKCVST 868



 Score = 30.0 bits (66), Expect(4) = 9e-20
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 75  LFLTAFPRVNFSILVNGSPEGYFYFSKGIRQGDPLS 182
           L +     V + I VNG     F   +G+RQGDPLS
Sbjct: 861 LIMKCVSTVTYRIRVNGELSESFSPGRGLRQGDPLS 896



 Score = 26.6 bits (57), Expect(4) = 9e-20
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 507  DKYLGAPLFLGHSKTVMF 560
            ++YLG P+F+G S+T +F
Sbjct: 1004 ERYLGLPVFVGRSRTKIF 1021