BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00035665
         (454 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...    61   3e-11
gb|ABW81094.1| RT6non-ltr [Cleome spinosa]                             56   2e-10
ref|XP_003533176.1| PREDICTED: uncharacterized protein LOC100777...    57   4e-10
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...    55   4e-10
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    54   5e-10

>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
           [Arabidopsis thaliana]
          Length = 1164

 Score = 61.2 bits (147), Expect(2) = 3e-11
 Identities = 33/87 (37%), Positives = 56/87 (64%)
 Frame = +3

Query: 108 SPLAFADDVLRFFRGDIESMYAVVDLVQEFASMTGLEINTDKSFLLTGGLNTREAAVVAE 287
           S L FADDV+ FF G   S++ +V+ +++FA  +GL +NT+K+ L   GL+  E+  +A 
Sbjct: 590 SHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMAS 649

Query: 288 VMNIRVVTPPIIYLGLPLVATRLGIKD 368
               ++ + P+ YLGLPL++ +L I +
Sbjct: 650 -YGFKLGSLPVRYLGLPLMSRKLTIAE 675



 Score = 31.6 bits (70), Expect(2) = 3e-11
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 379 LIERVTTKISNWKARLLSHAGRLVL 453
           LIE++T + ++W  RLLS AGR+ L
Sbjct: 679 LIEKITARFNSWVVRLLSFAGRVQL 703


>gb|ABW81094.1| RT6non-ltr [Cleome spinosa]
          Length = 459

 Score = 55.8 bits (133), Expect(2) = 2e-10
 Identities = 32/85 (37%), Positives = 47/85 (55%)
 Frame = +3

Query: 102 LASPLAFADDVLRFFRGDIESMYAVVDLVQEFASMTGLEINTDKSFLLTGGLNTREAAVV 281
           L + L FADD++ F +   +SM AV + +  F   +GLE+NT K  +  GGL   E   +
Sbjct: 61  LLTHLIFADDLVIFSKASRQSMQAVQNCLNWFGRNSGLEVNTGKCEMFLGGLTDSEKQEL 120

Query: 282 AEVMNIRVVTPPIIYLGLPLVATRL 356
           +  M I +   P+ YLGLP+   RL
Sbjct: 121 SSCMGITLGNFPMKYLGLPVNTHRL 145



 Score = 34.3 bits (77), Expect(2) = 2e-10
 Identities = 12/25 (48%), Positives = 21/25 (84%)
 Frame = +1

Query: 379 LIERVTTKISNWKARLLSHAGRLVL 453
           L+E++  K+SNW ++LLS+AG++ L
Sbjct: 153 LLEKIRAKVSNWSSKLLSYAGKIQL 177


>ref|XP_003533176.1| PREDICTED: uncharacterized protein LOC100777167 [Glycine max]
          Length = 1324

 Score = 56.6 bits (135), Expect(2) = 4e-10
 Identities = 29/84 (34%), Positives = 49/84 (58%)
 Frame = +3

Query: 114  LAFADDVLRFFRGDIESMYAVVDLVQEFASMTGLEINTDKSFLLTGGLNTREAAVVAEVM 293
            L FADDVL F RGD +S+  +++ +++F+  TGL++N  K  +  GG++      +  + 
Sbjct: 893  LTFADDVLLFCRGDSKSVSMMMETIRKFSDSTGLKVNPAKCQMFFGGMDGCSKENLRRIT 952

Query: 294  NIRVVTPPIIYLGLPLVATRLGIK 365
            +      P+ YLG+PL   RL I+
Sbjct: 953  DFAEGKLPVRYLGMPLSCKRLTIQ 976



 Score = 32.3 bits (72), Expect(2) = 4e-10
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +1

Query: 379  LIERVTTKISNWKARLLSHAGRLVL 453
            LI+++  ++ +W ++LLSHAGR+ L
Sbjct: 981  LIDKIVDRVKHWTSKLLSHAGRIQL 1005


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score = 54.7 bits (130), Expect(2) = 4e-10
 Identities = 31/87 (35%), Positives = 47/87 (54%)
 Frame = +3

Query: 114 LAFADDVLRFFRGDIESMYAVVDLVQEFASMTGLEINTDKSFLLTGGLNTREAAVVAEVM 293
           L+FADD++    G + S+  +V++ + FA  +GL I+ +KS +   GL+      V    
Sbjct: 83  LSFADDLMVLSDGKVRSIEGIVEVFETFAKCSGLRISMEKSTVYFAGLSHTSPQEVMAHF 142

Query: 294 NIRVVTPPIIYLGLPLVATRLGIKDRL 374
              V T P+ YLGLPLV  +L   D L
Sbjct: 143 PFAVGTLPVRYLGLPLVTKQLSSTDYL 169



 Score = 34.3 bits (77), Expect(2) = 4e-10
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 349 QDLESRIVFSLIERVTTKISNWKARLLSHAGRLVL 453
           + L S     LIE +  KI +W AR LS+AGRL L
Sbjct: 161 KQLSSTDYLPLIEHIKKKIGSWSARFLSYAGRLNL 195


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score = 54.3 bits (129), Expect(2) = 5e-10
 Identities = 28/87 (32%), Positives = 48/87 (55%)
 Frame = +3

Query: 114  LAFADDVLRFFRGDIESMYAVVDLVQEFASMTGLEINTDKSFLLTGGLNTREAAVVAEVM 293
            L FADD++ F  G   S+  V+ + ++FA+ +GL I+ +KS L    +++   A +    
Sbjct: 956  LCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASILARF 1015

Query: 294  NIRVVTPPIIYLGLPLVATRLGIKDRL 374
                 + P+ YLGLPL+  R+ + D L
Sbjct: 1016 PFDSGSLPVRYLGLPLMTKRMTLADCL 1042



 Score = 34.3 bits (77), Expect(2) = 5e-10
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = +1

Query: 379  LIERVTTKISNWKARLLSHAGRLVL 453
            L+E++ ++IS+WK R LS+AGRL L
Sbjct: 1044 LLEKIRSRISSWKNRFLSYAGRLQL 1068