BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00035650
         (686 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37517.3| unnamed protein product [Vitis vinifera]              301   1e-79
ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis ...   301   1e-79
ref|XP_002307047.1| predicted protein [Populus trichocarpa] gi|2...   278   7e-73
ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [C...   274   1e-71
ref|XP_003602652.1| DNA topoisomerase [Medicago truncatula] gi|3...   271   1e-70

>emb|CBI37517.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  301 bits (770), Expect = 1e-79
 Identities = 138/228 (60%), Positives = 165/228 (72%)
 Frame = -3

Query: 684 LLEAMGIFFERSNRSGGDEHRVVGDIVRRCNVCNEFDMVLKRKPDGNFMVGCLGFPQCRN 505
           LLEAM +FFERSNRS GDE   VGD+VR+C +C E DMVL+RKPDGNFMVGCLG+PQCRN
Sbjct: 280 LLEAMALFFERSNRSSGDEQHEVGDVVRQCTLCQESDMVLRRKPDGNFMVGCLGYPQCRN 339

Query: 504 VVWLPGSLSEATVTTQVCNSCTPGPVFMIQFRFRQFGIPPGYNTNHLGCIGGCDEILKEL 325
           VVWLPGS+SEA +TT  CN CTPGPV+ IQF+FR+  IPP YN +HLGC+ GCDEIL++L
Sbjct: 340 VVWLPGSISEAAITTISCNHCTPGPVYKIQFKFRRLEIPPNYNIDHLGCVCGCDEILRQL 399

Query: 324 IEICGTXXXXXXXXXXXXXXXXXXXXXXXXXGQQTNSRARQGACMHCRQTGHSSDSCPSQ 145
            EICGT                              S  RQ AC+HC QTGHSS+ CPS+
Sbjct: 400 TEICGT----------GSRISARGRGSNASSTNAQRSNTRQTACIHCSQTGHSSNDCPSR 449

Query: 144 VVQPQSAQTRRRNIPNGEDSIPCTTCGASCVLRTANTESNRGRKFYSC 1
           V + +++Q+ R N+P+GE SIPC  CG  C+LRTANTE+NRGRKFYSC
Sbjct: 450 VPRSRNSQSHRTNMPSGESSIPCNVCGTPCILRTANTENNRGRKFYSC 497


>ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera]
          Length = 914

 Score =  301 bits (770), Expect = 1e-79
 Identities = 138/228 (60%), Positives = 165/228 (72%)
 Frame = -3

Query: 684  LLEAMGIFFERSNRSGGDEHRVVGDIVRRCNVCNEFDMVLKRKPDGNFMVGCLGFPQCRN 505
            LLEAM +FFERSNRS GDE   VGD+VR+C +C E DMVL+RKPDGNFMVGCLG+PQCRN
Sbjct: 605  LLEAMALFFERSNRSSGDEQHEVGDVVRQCTLCQESDMVLRRKPDGNFMVGCLGYPQCRN 664

Query: 504  VVWLPGSLSEATVTTQVCNSCTPGPVFMIQFRFRQFGIPPGYNTNHLGCIGGCDEILKEL 325
            VVWLPGS+SEA +TT  CN CTPGPV+ IQF+FR+  IPP YN +HLGC+ GCDEIL++L
Sbjct: 665  VVWLPGSISEAAITTISCNHCTPGPVYKIQFKFRRLEIPPNYNIDHLGCVCGCDEILRQL 724

Query: 324  IEICGTXXXXXXXXXXXXXXXXXXXXXXXXXGQQTNSRARQGACMHCRQTGHSSDSCPSQ 145
             EICGT                              S  RQ AC+HC QTGHSS+ CPS+
Sbjct: 725  TEICGT----------GSRISARGRGSNASSTNAQRSNTRQTACIHCSQTGHSSNDCPSR 774

Query: 144  VVQPQSAQTRRRNIPNGEDSIPCTTCGASCVLRTANTESNRGRKFYSC 1
            V + +++Q+ R N+P+GE SIPC  CG  C+LRTANTE+NRGRKFYSC
Sbjct: 775  VPRSRNSQSHRTNMPSGESSIPCNVCGTPCILRTANTENNRGRKFYSC 822


>ref|XP_002307047.1| predicted protein [Populus trichocarpa] gi|222856496|gb|EEE94043.1|
            predicted protein [Populus trichocarpa]
          Length = 910

 Score =  278 bits (711), Expect = 7e-73
 Identities = 131/228 (57%), Positives = 158/228 (69%)
 Frame = -3

Query: 684  LLEAMGIFFERSNRSGGDEHRVVGDIVRRCNVCNEFDMVLKRKPDGNFMVGCLGFPQCRN 505
            LLEAM IFF RS+RS GD+   +G+ VR C +C E +MVLK+  DGNFMVGC GFPQCRN
Sbjct: 606  LLEAMAIFFNRSDRSNGDDSSALGENVRPCGLCQEANMVLKKNRDGNFMVGCSGFPQCRN 665

Query: 504  VVWLPGSLSEATVTTQVCNSCTPGPVFMIQFRFRQFGIPPGYNTNHLGCIGGCDEILKEL 325
             VWLPG + EAT+T  +CNSCTPGPV++IQF+FRQ  IPPG+N NHLGCIGGCDE L++L
Sbjct: 666  AVWLPGPVLEATITNNICNSCTPGPVYLIQFKFRQLEIPPGFNVNHLGCIGGCDETLRQL 725

Query: 324  IEICGTXXXXXXXXXXXXXXXXXXXXXXXXXGQQTNSRARQGACMHCRQTGHSSDSCPSQ 145
            IEICGT                          Q++NS  RQ  C++C QTGH+S  CPS+
Sbjct: 726  IEICGT--------GSRVQGGNGPPTTTPSNPQRSNS--RQAPCIYCYQTGHASTDCPSR 775

Query: 144  VVQPQSAQTRRRNIPNGEDSIPCTTCGASCVLRTANTESNRGRKFYSC 1
            +   +  Q+   N  NGE SIPC+TCG  CVLRTANT +NRGRKFYSC
Sbjct: 776  ISATRHVQSHGMNQQNGESSIPCSTCGTPCVLRTANTANNRGRKFYSC 823


>ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cucumis sativus]
          Length = 925

 Score =  274 bits (701), Expect = 1e-71
 Identities = 131/228 (57%), Positives = 161/228 (70%)
 Frame = -3

Query: 684  LLEAMGIFFERSNRSGGDEHRVVGDIVRRCNVCNEFDMVLKRKPDGNFMVGCLGFPQCRN 505
            LLEAM +FFERSN SGGDE+R VG++V+ C +C + DMVLKR  DGN+MVGCLGFPQCRN
Sbjct: 612  LLEAMEVFFERSNGSGGDENRAVGEVVQLCGLCQDSDMVLKRNRDGNYMVGCLGFPQCRN 671

Query: 504  VVWLPGSLSEATVTTQVCNSCTPGPVFMIQFRFRQFGIPPGYNTNHLGCIGGCDEILKEL 325
            VVWLPGS++EATVT+  C  CTPGPV++IQF+FRQ  IPP YN NHLGC+GGCD+IL++L
Sbjct: 672  VVWLPGSIAEATVTSDRCTLCTPGPVYLIQFKFRQLEIPPNYNANHLGCVGGCDDILRQL 731

Query: 324  IEICGTXXXXXXXXXXXXXXXXXXXXXXXXXGQQTNSRARQGACMHCRQTGHSSDSCPSQ 145
             EICGT                          Q+ N    Q  C+ C+Q GHSS+ CPSQ
Sbjct: 732  TEICGT----------GSRVSARGRGTSSSNVQRDN--PGQSVCIFCQQVGHSSNDCPSQ 779

Query: 144  VVQPQSAQTRRRNIPNGEDSIPCTTCGASCVLRTANTESNRGRKFYSC 1
             V  +SAQ R+    +GE S+ C++CG+ CVLRTANT +NRGRKFY C
Sbjct: 780  SVGSRSAQRRQ----SGESSVSCSSCGSPCVLRTANTANNRGRKFYKC 823


>ref|XP_003602652.1| DNA topoisomerase [Medicago truncatula] gi|355491700|gb|AES72903.1|
           DNA topoisomerase [Medicago truncatula]
          Length = 432

 Score =  271 bits (692), Expect = 1e-70
 Identities = 128/232 (55%), Positives = 153/232 (65%), Gaps = 4/232 (1%)
 Frame = -3

Query: 684 LLEAMGIFFERSNRSGGDEHRVVGDIVRRCNVCNEFDMVLKRKPDGNFMVGCLGFPQCRN 505
           LLEAM IFFER NR G DE    G +VRRC +C E DMVLK+  DGNFMVGC  +PQCR+
Sbjct: 86  LLEAMAIFFERLNRVGSDEQNGTGVVVRRCRLCQESDMVLKKNRDGNFMVGCRSYPQCRS 145

Query: 504 VVWLPGSLSEATVTTQVCNSCTPGPVFMIQFRFRQFGIPPGYNTNHLGCIGGCDEILKEL 325
           VVWLPGS+SEA VTT  CN+CTPGPV++IQF+F+Q  IPP YN NHLGCIGGCDEIL +L
Sbjct: 146 VVWLPGSISEAVVTTNACNNCTPGPVYLIQFKFQQLKIPPSYNVNHLGCIGGCDEILTQL 205

Query: 324 IEICGTXXXXXXXXXXXXXXXXXXXXXXXXXGQQT----NSRARQGACMHCRQTGHSSDS 157
            EICGT                            T    ++  RQ  C HC++TGHSS+ 
Sbjct: 206 TEICGTGSRMPARGRGPTASTSNVHHTNPRSTASTSNAHHTNPRQAVCSHCQETGHSSND 265

Query: 156 CPSQVVQPQSAQTRRRNIPNGEDSIPCTTCGASCVLRTANTESNRGRKFYSC 1
           CPSQ  + ++ Q    N  NGE S+ C++CG  C L+TANT+SNRGR FYSC
Sbjct: 266 CPSQTRRSRNPQYPGMNQQNGESSVACSSCGTPCGLQTANTDSNRGRDFYSC 317