BLASTX nr result
ID: Cimicifuga21_contig00035630
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00035630
(583 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI16054.3| unnamed protein product [Vitis vinifera] 229 3e-58
ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containi... 229 3e-58
ref|XP_002313416.1| predicted protein [Populus trichocarpa] gi|2... 224 1e-56
ref|XP_002520500.1| pentatricopeptide repeat-containing protein,... 216 2e-54
ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containi... 207 1e-51
>emb|CBI16054.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 229 bits (583), Expect = 3e-58
Identities = 110/161 (68%), Positives = 129/161 (80%)
Frame = -2
Query: 483 ASSLKTTPQHSNNNKLIQSLCKQGNLKQAIQILSNEPNPTQHTYELLIQSCTHQNSLSDG 304
+++ ++ +NNN LIQSLCKQGNL QA+Q+LS EPNPTQHTYELLI SCT QNSL G
Sbjct: 38 STTTRSNGDSNNNNPLIQSLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQG 97
Query: 303 ITLHRHLINDGFDQDPFLATKLINMYTEFNSIDNARYVFDKILDKTIFIWNAIIRGLALA 124
I LHRHLI+DG DQDPFLATKLINMY+E +SIDNAR VFDK +TI++WNA+ R L LA
Sbjct: 98 IDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLA 157
Query: 123 GHGEEALSLYYQMNQIGVSSDRFTYTYALKACVVASPSVSL 1
G+G E L LY +MN+IGV SDRFTYTY LKACV + VSL
Sbjct: 158 GYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSL 198
>ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 229 bits (583), Expect = 3e-58
Identities = 110/161 (68%), Positives = 129/161 (80%)
Frame = -2
Query: 483 ASSLKTTPQHSNNNKLIQSLCKQGNLKQAIQILSNEPNPTQHTYELLIQSCTHQNSLSDG 304
+++ ++ +NNN LIQSLCKQGNL QA+Q+LS EPNPTQHTYELLI SCT QNSL G
Sbjct: 38 STTTRSNGDSNNNNPLIQSLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQG 97
Query: 303 ITLHRHLINDGFDQDPFLATKLINMYTEFNSIDNARYVFDKILDKTIFIWNAIIRGLALA 124
I LHRHLI+DG DQDPFLATKLINMY+E +SIDNAR VFDK +TI++WNA+ R L LA
Sbjct: 98 IDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLA 157
Query: 123 GHGEEALSLYYQMNQIGVSSDRFTYTYALKACVVASPSVSL 1
G+G E L LY +MN+IGV SDRFTYTY LKACV + VSL
Sbjct: 158 GYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSL 198
Score = 57.8 bits (138), Expect = 1e-06
Identities = 30/143 (20%), Positives = 70/143 (48%)
Frame = -2
Query: 456 HSNNNKLIQSLCKQGNLKQAIQILSNEPNPTQHTYELLIQSCTHQNSLSDGITLHRHLIN 277
+S N K +++L L + + + + + P T ++Q+C +L G +H +++
Sbjct: 259 YSKNGKPLEAL----ELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILR 314
Query: 276 DGFDQDPFLATKLINMYTEFNSIDNARYVFDKILDKTIFIWNAIIRGLALAGHGEEALSL 97
G D + + L+ +Y +++ VF+++ + + WN++I + G G +A+ +
Sbjct: 315 RGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQI 374
Query: 96 YYQMNQIGVSSDRFTYTYALKAC 28
+ +M G+S ++ L AC
Sbjct: 375 FKEMIDQGLSPSPISFVSVLGAC 397
>ref|XP_002313416.1| predicted protein [Populus trichocarpa] gi|222849824|gb|EEE87371.1|
predicted protein [Populus trichocarpa]
Length = 650
Score = 224 bits (570), Expect = 1e-56
Identities = 107/159 (67%), Positives = 130/159 (81%)
Frame = -2
Query: 477 SLKTTPQHSNNNKLIQSLCKQGNLKQAIQILSNEPNPTQHTYELLIQSCTHQNSLSDGIT 298
+L T ++NNKLIQSLCKQGNL QA+++LS EPNP QHTYELLI SCTHQNSL D
Sbjct: 32 TLNPTASTADNNKLIQSLCKQGNLTQALELLSLEPNPAQHTYELLILSCTHQNSLLDAQR 91
Query: 297 LHRHLINDGFDQDPFLATKLINMYTEFNSIDNARYVFDKILDKTIFIWNAIIRGLALAGH 118
+HRHL+ +GFDQDPFLATKLINMY+ F+SIDNAR VFDK ++TI+++NA+ R L+LAGH
Sbjct: 92 VHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGH 151
Query: 117 GEEALSLYYQMNQIGVSSDRFTYTYALKACVVASPSVSL 1
GEE L++Y +MN IG+ SDRFTYTY LKACV + VSL
Sbjct: 152 GEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSL 190
Score = 59.7 bits (143), Expect = 3e-07
Identities = 31/143 (21%), Positives = 69/143 (48%)
Frame = -2
Query: 456 HSNNNKLIQSLCKQGNLKQAIQILSNEPNPTQHTYELLIQSCTHQNSLSDGITLHRHLIN 277
++ N K ++L L + + + + + P T ++Q+C +L G +H +++
Sbjct: 251 YAKNGKAFEAL----ELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILR 306
Query: 276 DGFDQDPFLATKLINMYTEFNSIDNARYVFDKILDKTIFIWNAIIRGLALAGHGEEALSL 97
G D + + L+ MY ++ + VFD++ + + WN++I + G G++A+ +
Sbjct: 307 KGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGI 366
Query: 96 YYQMNQIGVSSDRFTYTYALKAC 28
+ +M GV ++ L AC
Sbjct: 367 FEEMTYNGVEPSPISFVSVLGAC 389
Score = 55.5 bits (132), Expect = 7e-06
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Frame = -2
Query: 357 TYELLIQSCTHQNS----LSDGITLHRHLINDGFDQDPFLATKLINMYTEFNSIDNARYV 190
TY ++++C L+ G +H H++ G+D + T L++MY +F + NA V
Sbjct: 173 TYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCV 232
Query: 189 FDKILDKTIFIWNAIIRGLALAGHGEEALSLYYQM 85
F+++ K + W+A+I A G EAL L+ ++
Sbjct: 233 FNQMPVKNVVSWSAMIACYAKNGKAFEALELFREL 267
>ref|XP_002520500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540342|gb|EEF41913.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 414
Score = 216 bits (550), Expect = 2e-54
Identities = 107/180 (59%), Positives = 136/180 (75%), Gaps = 4/180 (2%)
Frame = -2
Query: 528 PPNYSNTKTKHTCPKAS----SLKTTPQHSNNNKLIQSLCKQGNLKQAIQILSNEPNPTQ 361
PP++S ++ T PK +L T +N+NKLIQSLCKQGNLKQA+ +L NEP+P Q
Sbjct: 13 PPSHSTFFSRPT-PKPPICFVNLNPTIPTANSNKLIQSLCKQGNLKQALNLLCNEPDPAQ 71
Query: 360 HTYELLIQSCTHQNSLSDGITLHRHLINDGFDQDPFLATKLINMYTEFNSIDNARYVFDK 181
HTYELL+ SCTHQNS D +H+HL+++GFDQDPFLATKLINMY+ F SIDNAR VFDK
Sbjct: 72 HTYELLLLSCTHQNSFLDAQFVHQHLLDNGFDQDPFLATKLINMYSSFGSIDNARKVFDK 131
Query: 180 ILDKTIFIWNAIIRGLALAGHGEEALSLYYQMNQIGVSSDRFTYTYALKACVVASPSVSL 1
+T++++NA+ R L L G+GEE L LY +MN IG+ SDRFTYTY LKACV ++ +SL
Sbjct: 132 TRSRTLYVYNALFRALTLVGNGEEVLRLYRRMNSIGMPSDRFTYTYVLKACVASNSLLSL 191
Score = 60.8 bits (146), Expect = 2e-07
Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Frame = -2
Query: 438 LIQSLCKQGNLKQAIQIL------SNEPNPTQHTYELLIQSCTHQNSLSDGITLHRHLIN 277
+I K G +A+++ + + P T ++Q+C +L G LH +++
Sbjct: 248 MIACYAKNGRPFEALELFREMMLETKDMCPNSVTMVSVLQACAALAALEQGKLLHGYILR 307
Query: 276 DGFDQDPFLATKLINMYTEFNSIDNARYVFDKILDKTIFIWNAIIRGLALAGHGEEALSL 97
G D + + L+ MY + A++VFD++ + + WN++I + G G++A+ +
Sbjct: 308 RGLDSILPVISSLVTMYARCGKLQLAQHVFDQMDKRDVVSWNSLISSYGVHGFGKKAIQI 367
Query: 96 YYQMNQIGVSSDRFTYTYALKAC 28
+ M + GV ++ L AC
Sbjct: 368 FKDMTRNGVFPSPISFVSVLGAC 390
>ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 207 bits (527), Expect = 1e-51
Identities = 104/174 (59%), Positives = 130/174 (74%)
Frame = -2
Query: 525 PNYSNTKTKHTCPKASSLKTTPQHSNNNKLIQSLCKQGNLKQAIQILSNEPNPTQHTYEL 346
P YS +K + S +TP +SNNN LIQSLCKQGNLKQA+ +LS+E NPTQ T EL
Sbjct: 17 PRYSTSKL--SVSSFSFNPSTPPNSNNNHLIQSLCKQGNLKQALYLLSHESNPTQQTCEL 74
Query: 345 LIQSCTHQNSLSDGITLHRHLINDGFDQDPFLATKLINMYTEFNSIDNARYVFDKILDKT 166
LI S +NSLSD + +H+ L++ GFDQDPFLATKLINM++E +++DNAR VFDK +T
Sbjct: 75 LILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRT 134
Query: 165 IFIWNAIIRGLALAGHGEEALSLYYQMNQIGVSSDRFTYTYALKACVVASPSVS 4
I++WNA+ R LALAG G + L LY +MN +GVSSDRFTYTY LKACV + VS
Sbjct: 135 IYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVS 188
Score = 65.9 bits (159), Expect = 5e-09
Identities = 33/143 (23%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Frame = -2
Query: 438 LIQSLCKQGNLKQAIQIL------SNEPNPTQHTYELLIQSCTHQNSLSDGITLHRHLIN 277
+I K G +A+++ +++ P T ++Q+C +L G +H +++
Sbjct: 246 MIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILR 305
Query: 276 DGFDQDPFLATKLINMYTEFNSIDNARYVFDKILDKTIFIWNAIIRGLALAGHGEEALSL 97
G D + + LI MY +++ + +FD++ K + +WN++I L G+G +A+ +
Sbjct: 306 RGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKI 365
Query: 96 YYQMNQIGVSSDRFTYTYALKAC 28
+ +M G S ++ L AC
Sbjct: 366 FEEMIDHGFSPSHISFISVLGAC 388