BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00034975
         (443 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT39281.2| Integrase core domain containing protein [Solanum...    62   6e-08
emb|CAN75700.1| hypothetical protein VITISV_035987 [Vitis vinifera]    61   8e-08
emb|CAN79733.1| hypothetical protein VITISV_016615 [Vitis vinifera]    60   1e-07
gb|AAF99727.1|AC004557_6 F17L21.7 [Arabidopsis thaliana]               55   1e-06
gb|AAC02666.1| polyprotein [Arabidopsis thaliana]                      56   2e-06

>gb|AAT39281.2| Integrase core domain containing protein [Solanum demissum]
          Length = 1760

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
 Frame = -3

Query: 405 MKKNMLFVAKFTVDNNVGLFFTPHHYTITYLHSGTNLFQGPCKDSLYHIPM--S*FTPTA 232
           +K N+L V+KF  DN+  + F P  Y +  L +G  LF+G  +D LY  P+  +  TP  
Sbjct: 374 IKNNLLSVSKFCRDNHTSIEFFPFSYCVKDLSTGAPLFRGQNRDGLYEWPLGSAHHTPQC 433

Query: 231 LAVISSDIWHNRLNHPNIKLLS 166
             V+   +WH RL HPN + L+
Sbjct: 434 NVVVPLHLWHRRLGHPNHRTLN 455


>emb|CAN75700.1| hypothetical protein VITISV_035987 [Vitis vinifera]
          Length = 1099

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
 Frame = -3

Query: 435 KLNDVYHGLDMKKNMLFVAKFTVDNNVGLFFTPHHYTITYLHSGTNLFQGPCKDSLYHIP 256
           KLN+V     MKKN++ +++F   NNV + F P  + +  + + T L +G  KD +Y  P
Sbjct: 447 KLNNVLCVPTMKKNLISISQFCTSNNVSIEFLPTAFLVKDIQTRTTLLKGNTKDGVYEWP 506

Query: 255 MS*FTPTALAVISSDI----WHNRLNHPNIKLLSHMRQNKMLSF 136
           +S   P  LA  S       WH RL HP  K+L  +       F
Sbjct: 507 IS---PPLLAFSSRKTTLSEWHQRLGHPTFKILKQIVSKNKFDF 547


>emb|CAN79733.1| hypothetical protein VITISV_016615 [Vitis vinifera]
          Length = 807

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
 Frame = -3

Query: 405 MKKNMLFVAKFTVDNNVGLFFTPHHYTITYLHSGTNLFQGPCKDSLYH--IPMS*FTPTA 232
           MKKN++ +++F + NN  + F    + +  L SG  LFQG  KD +Y    P +     +
Sbjct: 143 MKKNLISISQFCITNNALVEFLLSSFFVKDLRSGAILFQGSTKDGVYEWTTPKNPILAFS 202

Query: 231 LAVISSDIWHNRLNHPNIKLLSHMRQNKML 142
            A I+S  WH+RL HP + +L H+  N  L
Sbjct: 203 TAKITSINWHHRLGHPALPILQHILSNSCL 232


>gb|AAF99727.1|AC004557_6 F17L21.7 [Arabidopsis thaliana]
          Length = 1534

 Score = 55.5 bits (132), Expect(2) = 1e-06
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
 Frame = -3

Query: 432 LNDVYHGLDMKKNMLFVAKFTVDNNVGLFFTPHHYTITYLHSGTNLFQGPCKDSLYHIPM 253
           LN++ +  ++ KN++ V K    N V + F P H+ +  L +G  L QG  KD LY  P+
Sbjct: 480 LNNILYVPNLHKNLISVYKLCNANKVSVEFFPAHFQVKDLSTGARLLQGRTKDELYEWPV 539

Query: 252 S*FTPTALAV-----ISSDIWHNRLNHPNIKLLSHM 160
              TP +L        +   WH+RL HP+  +L  +
Sbjct: 540 PSNTPISLFASPTPKTTLPSWHSRLGHPSPPVLKSL 575



 Score = 21.9 bits (45), Expect(2) = 1e-06
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 122 KHNFCKGCAIGKSTHLPY 69
           KH  C  C I KS  LP+
Sbjct: 589 KHFPCSHCLINKSHKLPF 606


>gb|AAC02666.1| polyprotein [Arabidopsis thaliana]
          Length = 1451

 Score = 55.8 bits (133), Expect(2) = 2e-06
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
 Frame = -3

Query: 432 LNDVYHGLDMKKNMLFVAKFTVDNNVGLFFTPHHYTITYLHSGTNLFQGPCKDSLYHIPM 253
           L DV +  D++KN++ V +    N V + F P H+ +  L +G  L QG  K+ LY  P+
Sbjct: 389 LKDVLYVPDIQKNLISVYRMCNTNGVSVEFFPAHFQVKDLSTGARLLQGKTKNELYEWPV 448

Query: 252 S*FTPTAL---AVISSDI--WHNRLNHPNIKLL-----------SHMRQNKML 142
           +    T++       +D+  WH RL HP++ +L           SH  QN++L
Sbjct: 449 NSSIATSMFASPTPKTDLPSWHARLGHPSLPILKALISKFSLPISHSLQNQLL 501



 Score = 20.8 bits (42), Expect(2) = 2e-06
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 110 CKGCAIGKSTHLPY 69
           C  C+I KS  LP+
Sbjct: 502 CSDCSINKSHKLPF 515