BLASTX nr result
ID: Cimicifuga21_contig00034601
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00034601
(630 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002516925.1| pentatricopeptide repeat-containing protein,... 134 3e-40
ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containi... 130 3e-39
ref|XP_002882500.1| pentatricopeptide repeat-containing protein ... 126 1e-36
ref|XP_002862796.1| hypothetical protein ARALYDRAFT_359368 [Arab... 126 1e-36
ref|NP_187348.1| pentatricopeptide repeat-containing protein [Ar... 123 1e-35
>ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544013|gb|EEF45539.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 901
Score = 134 bits (336), Expect(2) = 3e-40
Identities = 78/143 (54%), Positives = 96/143 (67%), Gaps = 7/143 (4%)
Frame = -1
Query: 624 PEAYDLLLKAMARSKKFDSFEQVLDEMSIAGYRLSNSTFIELVTSCLNS*RLSEAFNLIQ 445
PEAYD LL MA++ KFD FEQ+L EMSIAG+ S T IEL+ SC+ S +L E F+LIQ
Sbjct: 128 PEAYDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQ 187
Query: 444 TMHKFKFLPAFSAYTTLIGAFSGVHKPCLIRCTS*GMK*T-------CS*TLIRAFSRED 286
M KFKF PAFSAYTTLIGA S V + ++ M+ T+IR F+RE
Sbjct: 188 CMRKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREG 247
Query: 285 QVDAALSLLDEVKSNAFEANIVL 217
++DAALSLLDE+KSN A+IVL
Sbjct: 248 RLDAALSLLDEMKSNCLHADIVL 270
Score = 57.4 bits (137), Expect(2) = 3e-40
Identities = 28/43 (65%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Frame = -2
Query: 215 CIDCFGK---VYMAWKFFHEMNVQVLAPDDATYTSMIGKRRRG 96
CIDCFGK V MAWKFFHE+ L PDD TYTSMIG +G
Sbjct: 274 CIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKG 316
>ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 130 bits (327), Expect(2) = 3e-39
Identities = 75/143 (52%), Positives = 100/143 (69%), Gaps = 7/143 (4%)
Frame = -1
Query: 624 PEAYDLLLKAMARSKKFDSFEQVLDEMSIAGYRLSNSTFIELVTSCLNS*RLSEAFNLIQ 445
PEAY+ LL MAR+ +FD E++L+EMS++G+ S++ IELV +C+ S +L EAF++IQ
Sbjct: 125 PEAYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQ 184
Query: 444 TMHKFKFLPAFSAYTTLIGAFSGVHKPCLIRCTS*GMK*T-------CS*TLIRAFSRED 286
TM KFKF PAFSAYT LIGA S V +P + M+ TLIR F+RE
Sbjct: 185 TMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREG 244
Query: 285 QVDAALSLLDEVKSNAFEANIVL 217
+VDAALSLLDE+KSN+ +A+IVL
Sbjct: 245 RVDAALSLLDEMKSNSLDADIVL 267
Score = 57.4 bits (137), Expect(2) = 3e-39
Identities = 27/38 (71%), Positives = 28/38 (73%), Gaps = 3/38 (7%)
Frame = -2
Query: 215 CIDCFGK---VYMAWKFFHEMNVQVLAPDDATYTSMIG 111
CIDCFGK V M+WKFFHEM L PDD TYTSMIG
Sbjct: 271 CIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIG 308
>ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297328340|gb|EFH58759.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 871
Score = 126 bits (317), Expect(2) = 1e-36
Identities = 71/143 (49%), Positives = 101/143 (70%), Gaps = 7/143 (4%)
Frame = -1
Query: 624 PEAYDLLLKAMARSKKFDSFEQVLDEMSIAGYRLSNSTFIELVTSCLNS*RLSEAFNLIQ 445
PE+Y+ LL MAR + FD+ +Q+L EMS+AG+ S +T IE+V SC+ + +L E F+++Q
Sbjct: 98 PESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQ 157
Query: 444 TMHKFKFLPAFSAYTTLIGAFSGVHKPCLI-----RCTS*GMK*TCS--*TLIRAFSRED 286
M KFKF PAFSAYTTLIGAFS V+ ++ + G + T TLIR F++E
Sbjct: 158 NMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEG 217
Query: 285 QVDAALSLLDEVKSNAFEANIVL 217
+VD+ALSLLDE+KS++ +A+IVL
Sbjct: 218 RVDSALSLLDEMKSSSLDADIVL 240
Score = 52.4 bits (124), Expect(2) = 1e-36
Identities = 25/38 (65%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Frame = -2
Query: 215 CIDCFGKVY---MAWKFFHEMNVQVLAPDDATYTSMIG 111
CID FGKV MAWKFFHE+ L PD+ TYTSMIG
Sbjct: 244 CIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIG 281
>ref|XP_002862796.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
lyrata] gi|297308523|gb|EFH39054.1| hypothetical protein
ARALYDRAFT_359368 [Arabidopsis lyrata subsp. lyrata]
Length = 378
Score = 126 bits (317), Expect(2) = 1e-36
Identities = 71/143 (49%), Positives = 101/143 (70%), Gaps = 7/143 (4%)
Frame = -1
Query: 624 PEAYDLLLKAMARSKKFDSFEQVLDEMSIAGYRLSNSTFIELVTSCLNS*RLSEAFNLIQ 445
PE+Y+ LL MAR + FD+ +Q+L EMS+AG+ S +T IE+V SC+ + +L E F+++Q
Sbjct: 112 PESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQ 171
Query: 444 TMHKFKFLPAFSAYTTLIGAFSGVHKPCLI-----RCTS*GMK*TCS--*TLIRAFSRED 286
M KFKF PAFSAYTTLIGAFS V+ ++ + G + T TLIR F++E
Sbjct: 172 NMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLALFQQMQELGYEPTVHLFTTLIRGFAKEG 231
Query: 285 QVDAALSLLDEVKSNAFEANIVL 217
+VD+ALSLLDE+KS++ +A+IVL
Sbjct: 232 RVDSALSLLDEMKSSSLDADIVL 254
Score = 52.4 bits (124), Expect(2) = 1e-36
Identities = 25/38 (65%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Frame = -2
Query: 215 CIDCFGKVY---MAWKFFHEMNVQVLAPDDATYTSMIG 111
CID FGKV MAWKFFHE+ L PD+ TYTSMIG
Sbjct: 258 CIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIG 295
>ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g06920 gi|6728999|gb|AAF26996.1|AC016827_7
hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 123 bits (309), Expect(2) = 1e-35
Identities = 69/143 (48%), Positives = 100/143 (69%), Gaps = 7/143 (4%)
Frame = -1
Query: 624 PEAYDLLLKAMARSKKFDSFEQVLDEMSIAGYRLSNSTFIELVTSCLNS*RLSEAFNLIQ 445
PE+Y+ LL MAR + FD+ +Q+L EMS+AG+ S +T IE+V C+ + +L E ++++Q
Sbjct: 98 PESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQ 157
Query: 444 TMHKFKFLPAFSAYTTLIGAFSGVHKPCLI-----RCTS*GMK*TCS--*TLIRAFSRED 286
M KFKF PAFSAYTTLIGAFS V+ ++ + G + T TLIR F++E
Sbjct: 158 MMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEG 217
Query: 285 QVDAALSLLDEVKSNAFEANIVL 217
+VD+ALSLLDE+KS++ +A+IVL
Sbjct: 218 RVDSALSLLDEMKSSSLDADIVL 240
Score = 52.4 bits (124), Expect(2) = 1e-35
Identities = 25/38 (65%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Frame = -2
Query: 215 CIDCFGKVY---MAWKFFHEMNVQVLAPDDATYTSMIG 111
CID FGKV MAWKFFHE+ L PD+ TYTSMIG
Sbjct: 244 CIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIG 281