BLASTX nr result

ID: Cimicifuga21_contig00034588 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00034588
         (495 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002884626.1| hypothetical protein ARALYDRAFT_478029 [Arab...   221   6e-56
ref|NP_187366.2| sec24-like transport protein [Arabidopsis thali...   219   2e-55
emb|CBI20238.3| unnamed protein product [Vitis vinifera]              219   2e-55
ref|XP_002282857.1| PREDICTED: protein transport protein Sec24-l...   219   2e-55
ref|XP_002311138.1| predicted protein [Populus trichocarpa] gi|2...   215   3e-54

>ref|XP_002884626.1| hypothetical protein ARALYDRAFT_478029 [Arabidopsis lyrata subsp.
           lyrata] gi|297330466|gb|EFH60885.1| hypothetical protein
           ARALYDRAFT_478029 [Arabidopsis lyrata subsp. lyrata]
          Length = 1036

 Score =  221 bits (562), Expect = 6e-56
 Identities = 99/125 (79%), Positives = 112/125 (89%)
 Frame = -3

Query: 376 EDFSSLSIGSTPGSLDPGLDPKALPRPLDGDVEPQSFVEMYPLNCHLRFLRLTTSAIPSS 197
           EDF+SLS+ S PGSL+PGLD K+ PRPLDGDVEP SF EMYP+NCH R+LRLTTSAIP+S
Sbjct: 270 EDFNSLSLSSIPGSLEPGLDHKSFPRPLDGDVEPSSFAEMYPMNCHSRYLRLTTSAIPNS 329

Query: 196 KSLLSRWHLPFGAVFHPLAETPDGEEVPVVNFGPTGIIRCRKCRTYVNPYVTFIDSGRKW 17
           +SL SRWHLP GAV  PLAETP+GEEVP+++FG TGIIRCR+CRTYVNPYVTF DSGRKW
Sbjct: 330 QSLASRWHLPLGAVVCPLAETPEGEEVPLIDFGSTGIIRCRRCRTYVNPYVTFTDSGRKW 389

Query: 16  RCNIC 2
           RCNIC
Sbjct: 390 RCNIC 394


>ref|NP_187366.2| sec24-like transport protein [Arabidopsis thaliana]
           gi|78099801|sp|Q9SFU0.2|SC24A_ARATH RecName:
           Full=Protein transport protein Sec24-like At3g07100
           gi|22531076|gb|AAM97042.1| putative Sec24-like COPII
           protein [Arabidopsis thaliana]
           gi|23197930|gb|AAN15492.1| putative Sec24-like COPII
           protein [Arabidopsis thaliana]
           gi|332640977|gb|AEE74498.1| sec24-like transport protein
           [Arabidopsis thaliana]
          Length = 1038

 Score =  219 bits (558), Expect = 2e-55
 Identities = 98/125 (78%), Positives = 112/125 (89%)
 Frame = -3

Query: 376 EDFSSLSIGSTPGSLDPGLDPKALPRPLDGDVEPQSFVEMYPLNCHLRFLRLTTSAIPSS 197
           EDF+SLS+ S PGSL+PGLD K+ PRPLDGDVEP SF EMYP+NCH R+LRLTTSAIP+S
Sbjct: 272 EDFNSLSLSSIPGSLEPGLDHKSFPRPLDGDVEPNSFAEMYPMNCHSRYLRLTTSAIPNS 331

Query: 196 KSLLSRWHLPFGAVFHPLAETPDGEEVPVVNFGPTGIIRCRKCRTYVNPYVTFIDSGRKW 17
           +SL SRWHLP GAV  PLAETP+GEEVP+++FG TGIIRCR+CRTYVNP+VTF DSGRKW
Sbjct: 332 QSLASRWHLPLGAVVCPLAETPEGEEVPLIDFGSTGIIRCRRCRTYVNPFVTFTDSGRKW 391

Query: 16  RCNIC 2
           RCNIC
Sbjct: 392 RCNIC 396


>emb|CBI20238.3| unnamed protein product [Vitis vinifera]
          Length = 944

 Score =  219 bits (557), Expect = 2e-55
 Identities = 98/126 (77%), Positives = 110/126 (87%)
 Frame = -3

Query: 379 VEDFSSLSIGSTPGSLDPGLDPKALPRPLDGDVEPQSFVEMYPLNCHLRFLRLTTSAIPS 200
           +EDFSSLS+GS PGS+D G+D KALPRPL+GDVEP SF EMYP+NCH R+LRLTTS IP+
Sbjct: 180 IEDFSSLSVGSVPGSIDLGIDSKALPRPLEGDVEPNSFAEMYPMNCHSRYLRLTTSGIPN 239

Query: 199 SKSLLSRWHLPFGAVFHPLAETPDGEEVPVVNFGPTGIIRCRKCRTYVNPYVTFIDSGRK 20
           S+SL+SRWHLP GAV  PLA  PDGEEVP+VNF  TGIIRCR+CRTYVNPYVTF D GRK
Sbjct: 240 SQSLVSRWHLPLGAVVCPLAVPPDGEEVPIVNFAATGIIRCRRCRTYVNPYVTFTDGGRK 299

Query: 19  WRCNIC 2
           WRCNIC
Sbjct: 300 WRCNIC 305


>ref|XP_002282857.1| PREDICTED: protein transport protein Sec24-like At3g07100-like
           [Vitis vinifera]
          Length = 1052

 Score =  219 bits (557), Expect = 2e-55
 Identities = 98/126 (77%), Positives = 110/126 (87%)
 Frame = -3

Query: 379 VEDFSSLSIGSTPGSLDPGLDPKALPRPLDGDVEPQSFVEMYPLNCHLRFLRLTTSAIPS 200
           +EDFSSLS+GS PGS+D G+D KALPRPL+GDVEP SF EMYP+NCH R+LRLTTS IP+
Sbjct: 288 IEDFSSLSVGSVPGSIDLGIDSKALPRPLEGDVEPNSFAEMYPMNCHSRYLRLTTSGIPN 347

Query: 199 SKSLLSRWHLPFGAVFHPLAETPDGEEVPVVNFGPTGIIRCRKCRTYVNPYVTFIDSGRK 20
           S+SL+SRWHLP GAV  PLA  PDGEEVP+VNF  TGIIRCR+CRTYVNPYVTF D GRK
Sbjct: 348 SQSLVSRWHLPLGAVVCPLAVPPDGEEVPIVNFAATGIIRCRRCRTYVNPYVTFTDGGRK 407

Query: 19  WRCNIC 2
           WRCNIC
Sbjct: 408 WRCNIC 413


>ref|XP_002311138.1| predicted protein [Populus trichocarpa] gi|222850958|gb|EEE88505.1|
           predicted protein [Populus trichocarpa]
          Length = 1043

 Score =  215 bits (547), Expect = 3e-54
 Identities = 100/125 (80%), Positives = 108/125 (86%)
 Frame = -3

Query: 376 EDFSSLSIGSTPGSLDPGLDPKALPRPLDGDVEPQSFVEMYPLNCHLRFLRLTTSAIPSS 197
           EDF SLSIGS PG++D GLDPKALPRPLDGDVEP S  E Y +NC+ R+LRLTTSAIPSS
Sbjct: 276 EDFGSLSIGSVPGTIDSGLDPKALPRPLDGDVEPNSLGEAYSMNCNPRYLRLTTSAIPSS 335

Query: 196 KSLLSRWHLPFGAVFHPLAETPDGEEVPVVNFGPTGIIRCRKCRTYVNPYVTFIDSGRKW 17
           +SLLSRWH P GAV  PLAE PDGEEVPV+NF  TGIIRCR+CRTYVNPYVTF DSGRKW
Sbjct: 336 QSLLSRWHCPLGAVVCPLAEAPDGEEVPVINFVSTGIIRCRRCRTYVNPYVTFTDSGRKW 395

Query: 16  RCNIC 2
           RCNIC
Sbjct: 396 RCNIC 400


Top