BLASTX nr result
ID: Cimicifuga21_contig00031397
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00031397
(499 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containi... 182 2e-44
gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japo... 179 2e-43
gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indi... 179 2e-43
ref|XP_002531691.1| pentatricopeptide repeat-containing protein,... 178 5e-43
ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containi... 172 2e-41
>ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 182 bits (462), Expect = 2e-44
Identities = 86/161 (53%), Positives = 120/161 (74%), Gaps = 2/161 (1%)
Frame = +2
Query: 23 REGKQIHGQIVSNGYENNVFVVNTLINMYSAFKEMEFAQKVFDECPN-SDIVSWNSLIDG 199
R G Q+H Q V G +VFVVNTL+ MY+AF++ ++VFD C +D+V+WN+++ G
Sbjct: 96 RTGAQVHAQAVRRGLLVDVFVVNTLLAMYAAFRDTRSMREVFDSCAGVADLVTWNTMLGG 155
Query: 200 YVKLGVLDMARKLFDKMPERNEVSWTAIISGYAKNGDLDVAQSLFDRMP-ICRNTVTWNS 376
YVK G + AR++F++MP+RN VSW+A++ YA G+LDVA+ +FD MP I RN V+WNS
Sbjct: 156 YVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGRNVVSWNS 215
Query: 377 MISGFAKCGFVSIARKMFDEMPQRNIVSWNTMISSYAQCGD 499
MI+GFA+ G + +ARKMFDEMP RN+VSWNTM+ YA G+
Sbjct: 216 MITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGE 256
Score = 108 bits (270), Expect = 4e-22
Identities = 55/139 (39%), Positives = 90/139 (64%), Gaps = 4/139 (2%)
Frame = +2
Query: 89 NTLINMYSAFKEMEFAQKVFDECP--NSDIVSWNSLIDGYVKLGVLDMARKLFDKMPERN 262
+ ++ Y+ E++ A+++FDE P ++VSWNS+I G+ + G+L +ARK+FD+MP RN
Sbjct: 181 SAMVGAYAGAGELDVAREMFDEMPAIGRNVVSWNSMITGFARHGLLPLARKMFDEMPVRN 240
Query: 263 EVSWTAIISGYAKNGDLDVAQSLFDRMPICRNTVTWNSMISGFAKCGFVSIARKMFDEMP 442
VSW ++ GYA NG+++ A+ LFDRMP ++ V+W MISG+A+ + ++F M
Sbjct: 241 LVSWNTMVRGYAVNGEMNDARELFDRMPE-KDVVSWTCMISGYAQARCYTETLELFRAMQ 299
Query: 443 QRNIVSWN--TMISSYAQC 493
+ V N TM+S + C
Sbjct: 300 SESNVLPNEVTMVSVLSAC 318
Score = 91.7 bits (226), Expect = 6e-17
Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 41/183 (22%)
Frame = +2
Query: 74 NVFVVNTLINMYSAFKEMEFAQKVFDECPNSDIVSWNSLIDGYVKLGVLDMARKLFDKMP 253
NV N++I ++ + A+K+FDE P ++VSWN+++ GY G ++ AR+LFD+MP
Sbjct: 209 NVVSWNSMITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMP 268
Query: 254 ERNEVSWTAIISGYAK----NGDLDVAQSLFDRMPICRNTVTWNSMISG----------- 388
E++ VSWT +ISGYA+ L++ +++ + N VT S++S
Sbjct: 269 EKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGR 328
Query: 389 --------------------------FAKCGFVSIARKMFDEMPQRNIVSWNTMISSYAQ 490
++KCG +A K+F + Q+N+ +WN +I+ A
Sbjct: 329 WAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAV 388
Query: 491 CGD 499
GD
Sbjct: 389 NGD 391
>gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 179 bits (455), Expect = 2e-43
Identities = 84/161 (52%), Positives = 116/161 (72%), Gaps = 2/161 (1%)
Frame = +2
Query: 23 REGKQIHGQIVSNGYENNVFVVNTLINMYSAFKEMEFAQKVFDECPN-SDIVSWNSLIDG 199
R G Q+H Q V G+ +VFVVN L+ MY A ++ ++VF C +D+VSWN++I G
Sbjct: 112 RTGAQVHAQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGG 171
Query: 200 YVKLGVLDMARKLFDKMPERNEVSWTAIISGYAKNGDLDVAQSLFDRMP-ICRNTVTWNS 376
YVK G ++ A+++FD+MP RN VSW+ ++ GYA G+LDVA+ +FDRMP I RN VTWNS
Sbjct: 172 YVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNS 231
Query: 377 MISGFAKCGFVSIARKMFDEMPQRNIVSWNTMISSYAQCGD 499
M++GFA+ G + +ARKMFDEMP RN+VSWN M+ Y+ D
Sbjct: 232 MVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSD 272
Score = 90.1 bits (222), Expect = 2e-16
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 41/183 (22%)
Frame = +2
Query: 74 NVFVVNTLINMYSAFKEMEFAQKVFDECPNSDIVSWNSLIDGYVKLGVLDMARKLFDKMP 253
NV N+++ ++ + A+K+FDE P ++VSWN+++ GY +D AR+LFD MP
Sbjct: 225 NVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMP 284
Query: 254 ERNEVSWTAIISGYAKNGDLDVAQSLFDRMP----ICRNTVTWNSMISG----------- 388
E++ VSWT +ISGYA+ G LF M + N VT S++S
Sbjct: 285 EKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGR 344
Query: 389 --------------------------FAKCGFVSIARKMFDEMPQRNIVSWNTMISSYAQ 490
+AKCG IA K+F+ + ++N+ +WN +I+ A
Sbjct: 345 WVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAM 404
Query: 491 CGD 499
G+
Sbjct: 405 NGN 407
>gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 179 bits (455), Expect = 2e-43
Identities = 84/161 (52%), Positives = 116/161 (72%), Gaps = 2/161 (1%)
Frame = +2
Query: 23 REGKQIHGQIVSNGYENNVFVVNTLINMYSAFKEMEFAQKVFDECPN-SDIVSWNSLIDG 199
R G Q+H Q V G+ +VFVVN L+ MY A ++ ++VF C +D+VSWN++I G
Sbjct: 112 RTGAQVHAQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGG 171
Query: 200 YVKLGVLDMARKLFDKMPERNEVSWTAIISGYAKNGDLDVAQSLFDRMP-ICRNTVTWNS 376
YVK G ++ A+++FD+MP RN VSW+ ++ GYA G+LDVA+ +FDRMP I RN VTWNS
Sbjct: 172 YVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNS 231
Query: 377 MISGFAKCGFVSIARKMFDEMPQRNIVSWNTMISSYAQCGD 499
M++GFA+ G + +ARKMFDEMP RN+VSWN M+ Y+ D
Sbjct: 232 MVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSD 272
Score = 90.1 bits (222), Expect = 2e-16
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 41/183 (22%)
Frame = +2
Query: 74 NVFVVNTLINMYSAFKEMEFAQKVFDECPNSDIVSWNSLIDGYVKLGVLDMARKLFDKMP 253
NV N+++ ++ + A+K+FDE P ++VSWN+++ GY +D AR+LFD MP
Sbjct: 225 NVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMP 284
Query: 254 ERNEVSWTAIISGYAKNGDLDVAQSLFDRMP----ICRNTVTWNSMISG----------- 388
E++ VSWT +ISGYA+ G LF M + N VT S++S
Sbjct: 285 EKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGR 344
Query: 389 --------------------------FAKCGFVSIARKMFDEMPQRNIVSWNTMISSYAQ 490
+AKCG IA K+F+ + ++N+ +WN +I+ A
Sbjct: 345 WVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAM 404
Query: 491 CGD 499
G+
Sbjct: 405 NGN 407
>ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528667|gb|EEF30682.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 434
Score = 178 bits (451), Expect = 5e-43
Identities = 80/156 (51%), Positives = 120/156 (76%)
Frame = +2
Query: 17 ATREGKQIHGQIVSNGYENNVFVVNTLINMYSAFKEMEFAQKVFDECPNSDIVSWNSLID 196
AT+EGKQIHG ++ G+ N FV ++L+NMYS K+++ A+KVF + D+VSWNSLID
Sbjct: 122 ATKEGKQIHGLVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLID 181
Query: 197 GYVKLGVLDMARKLFDKMPERNEVSWTAIISGYAKNGDLDVAQSLFDRMPICRNTVTWNS 376
GYVK G +++ KLF++MPER+ SWT +I G++K G +DVA+ LFD+MP RN V+WN+
Sbjct: 182 GYVKCGQVELGMKLFEEMPERDLFSWTVLIDGFSKCGKVDVARELFDKMP-SRNLVSWNA 240
Query: 377 MISGFAKCGFVSIARKMFDEMPQRNIVSWNTMISSY 484
MI+G+ K G +A ++FD+MP++N++SWN+M++ Y
Sbjct: 241 MINGYMKAGDFVLASELFDKMPEKNLISWNSMVAGY 276
Score = 84.3 bits (207), Expect = 9e-15
Identities = 50/154 (32%), Positives = 87/154 (56%), Gaps = 10/154 (6%)
Frame = +2
Query: 68 ENNVFVVNTLINMYSAFKEMEFAQKVFDECPNSDIVSWNSLIDGYVKLGVLDMARKLFDK 247
E ++F LI+ +S +++ A+++FD+ P+ ++VSWN++I+GY+K G +A +LFDK
Sbjct: 201 ERDLFSWTVLIDGFSKCGKVDVARELFDKMPSRNLVSWNAMINGYMKAGDFVLASELFDK 260
Query: 248 MPERNEVSWTAIISGYAKNGDLDVAQSLF------DRMPICRNTVTWNSMISGFAKCGFV 409
MPE+N +SW ++++GY N A LF D P V+ S +SG A +
Sbjct: 261 MPEKNLISWNSMVAGYDLNERFKEALDLFLTMLERDFTPNHATLVSTFSAVSGLAS---L 317
Query: 410 SIARKMFDEMPQRNI----VSWNTMISSYAQCGD 499
S + M M + V ++I+ Y++CG+
Sbjct: 318 STGKWMHSYMVKNGFQLDGVLATSLINMYSKCGN 351
Score = 74.7 bits (182), Expect = 7e-12
Identities = 47/198 (23%), Positives = 94/198 (47%), Gaps = 40/198 (20%)
Frame = +2
Query: 23 REGKQIHGQIVSNGYENNVFVVNTLINMYSAFK--EMEFAQKVFDECPNSDIVSWNSLID 196
+E KQ+H V ++ + + L+++Y+ K +E+ +F++ +V +N LI
Sbjct: 22 KETKQLHALSVKTNTFSHPSISSCLLSLYAEPKINNLEYVLSIFNKIQEPALVLYNILIK 81
Query: 197 GYVKLGVLDMARKLFDKMPER--------------------------------------N 262
Y++ + A LF ++ N
Sbjct: 82 CYIQNQLSHDAITLFSQLLHEFNPDGFTLPCVIKGCARLHATKEGKQIHGLVLKLGFGLN 141
Query: 263 EVSWTAIISGYAKNGDLDVAQSLFDRMPICRNTVTWNSMISGFAKCGFVSIARKMFDEMP 442
+ +++++ Y+K D+D A+ +F M ++ V+WNS+I G+ KCG V + K+F+EMP
Sbjct: 142 KFVSSSLVNMYSKCKDIDSAKKVFLSMDD-KDLVSWNSLIDGYVKCGQVELGMKLFEEMP 200
Query: 443 QRNIVSWNTMISSYAQCG 496
+R++ SW +I +++CG
Sbjct: 201 ERDLFSWTVLIDGFSKCG 218
>ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED:
pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 172 bits (437), Expect = 2e-41
Identities = 75/156 (48%), Positives = 121/156 (77%)
Frame = +2
Query: 17 ATREGKQIHGQIVSNGYENNVFVVNTLINMYSAFKEMEFAQKVFDECPNSDIVSWNSLID 196
A +EGKQIHG ++ G+ + FV+++L++MYS E+E +KVFD + D+VSWNSLID
Sbjct: 129 ALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLID 188
Query: 197 GYVKLGVLDMARKLFDKMPERNEVSWTAIISGYAKNGDLDVAQSLFDRMPICRNTVTWNS 376
GY + G +++A ++F++MPE++ SWT +I G +K+G L+ A+ +FDRMPI RN+V+WN+
Sbjct: 189 GYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPI-RNSVSWNA 247
Query: 377 MISGFAKCGFVSIARKMFDEMPQRNIVSWNTMISSY 484
MI+G+ K G + A+++FD+MP+R++V+WN+MI+ Y
Sbjct: 248 MINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGY 283
Score = 79.7 bits (195), Expect = 2e-13
Identities = 50/198 (25%), Positives = 96/198 (48%), Gaps = 40/198 (20%)
Frame = +2
Query: 23 REGKQIHGQIVSNGYENNVFVVNTLINMYS--AFKEMEFAQKVFDECPNSDIVSWNSLID 196
RE Q+H + N+ V + L+ +Y+ +++A +FD +VSWN LI
Sbjct: 29 REANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIK 88
Query: 197 GYVKLGVLDMARKLFDKM-----PER---------------------------------N 262
Y++ + A LF K+ P+ +
Sbjct: 89 CYIENQRSNDAIALFCKLLCDFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVD 148
Query: 263 EVSWTAIISGYAKNGDLDVAQSLFDRMPICRNTVTWNSMISGFAKCGFVSIARKMFDEMP 442
+ ++++S Y+K G++++ + +FDRM ++ V+WNS+I G+A+CG + +A +MF+EMP
Sbjct: 149 KFVLSSLVSMYSKCGEIELCRKVFDRMED-KDVVSWNSLIDGYARCGEIELALEMFEEMP 207
Query: 443 QRNIVSWNTMISSYAQCG 496
+++ SW +I ++ G
Sbjct: 208 EKDSFSWTILIDGLSKSG 225
Score = 79.7 bits (195), Expect = 2e-13
Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 38/174 (21%)
Frame = +2
Query: 68 ENNVFVVNTLINMYSAFKEMEFAQKVFDECPNSDIVSWNSLIDGYVKLGVLDMARKLFDK 247
E + F LI+ S ++E A+ VFD P + VSWN++I+GY+K G + A++LFD+
Sbjct: 208 EKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQ 267
Query: 248 MPERNEVSWTAIISGYAKNGDLDVAQSLFDRM---------------------PICRNTV 364
MPER+ V+W ++I+GY +N A LF+ M + T
Sbjct: 268 MPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTG 327
Query: 365 TW-----------------NSMISGFAKCGFVSIARKMFDEMPQRNIVSWNTMI 475
W +I ++KCG V A ++F +P++ + W ++I
Sbjct: 328 RWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVI 381