BLASTX nr result
ID: Cimicifuga21_contig00031292
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00031292
(324 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containi... 96 2e-18
ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containi... 95 7e-18
ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containi... 94 1e-17
ref|XP_003623891.1| Pentatricopeptide repeat-containing protein ... 92 4e-17
tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide r... 92 6e-17
>ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 96.3 bits (238), Expect = 2e-18
Identities = 42/96 (43%), Positives = 67/96 (69%)
Frame = +1
Query: 25 NAVVYTAMITGYAKCADLPAARLVFDRMVERDVVSWTAMISAYSRAGLYDEAVDLCKLML 204
+ V + M++GY C DL +AR VFD+M+ERDV+SW AMI Y + G Y +A+++ M
Sbjct: 178 DVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQ 237
Query: 205 KIGGQIKPNRTTVSNVVSACAHLGSIELARWIKDYI 312
K+GG + P+ T+ +V+SACAH+G+++ RWI ++
Sbjct: 238 KVGG-VVPDDVTLVSVLSACAHVGALDFGRWIDRFV 272
Score = 70.5 bits (171), Expect = 1e-10
Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 12/112 (10%)
Frame = +1
Query: 22 VNAVVYTAMITGYAKCADLPAARLVFDRMVERDVVSWTAMISAYSRAGLYDEAVDLCKLM 201
+N + A+I YAKC + AR +FD M ERDV+SW+ MI G DEA M
Sbjct: 279 LNLYLGNALIDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKM 338
Query: 202 LKIGGQIKPNRTTVSNVVSACAHLGSIE-----LARWIKDY-------IYGC 321
L+ G +KPN T ++SAC+H G ++ +R I++Y YGC
Sbjct: 339 LECG--VKPNEVTFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGC 388
>ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera] gi|296090299|emb|CBI40118.3| unnamed
protein product [Vitis vinifera]
Length = 618
Score = 94.7 bits (234), Expect = 7e-18
Identities = 44/103 (42%), Positives = 73/103 (70%)
Frame = +1
Query: 1 LLQGEMNVNAVVYTAMITGYAKCADLPAARLVFDRMVERDVVSWTAMISAYSRAGLYDEA 180
+++ EM++N+ V +A+I Y KC DL +AR VFDRMV++DVV+W AMI+ Y++ G+ DEA
Sbjct: 253 VVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEA 312
Query: 181 VDLCKLMLKIGGQIKPNRTTVSNVVSACAHLGSIELARWIKDY 309
+ L M + G + P++ T+ V+SACA +G+++ +W+ Y
Sbjct: 313 IILFSGMRESG--VNPDKITLVGVLSACASIGALDFGKWLDTY 353
Score = 74.7 bits (182), Expect = 7e-12
Identities = 38/104 (36%), Positives = 62/104 (59%)
Frame = +1
Query: 1 LLQGEMNVNAVVYTAMITGYAKCADLPAARLVFDRMVERDVVSWTAMISAYSRAGLYDEA 180
+L+ + + V ++IT Y++C +L AR VFD + E+D+VSW +MIS YSR G +A
Sbjct: 152 VLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDA 211
Query: 181 VDLCKLMLKIGGQIKPNRTTVSNVVSACAHLGSIELARWIKDYI 312
V L M G +P+ T+ +++ AC LG + L WI+ ++
Sbjct: 212 VGLFGEMRDAG--FEPDEMTLVSILGACGDLGDLGLGSWIEGFV 253
Score = 72.0 bits (175), Expect = 5e-11
Identities = 39/91 (42%), Positives = 54/91 (59%)
Frame = +1
Query: 34 VYTAMITGYAKCADLPAARLVFDRMVERDVVSWTAMISAYSRAGLYDEAVDLCKLMLKIG 213
V TA+I YAKC L A VF+ M +++ VSW AMISA + G E++ L K M K G
Sbjct: 365 VSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEG 424
Query: 214 GQIKPNRTTVSNVVSACAHLGSIELARWIKD 306
G ++PN + V+SAC H G ++ R + D
Sbjct: 425 GAVRPNDISFIGVLSACVHAGLVDEGRQLFD 455
>ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 94.0 bits (232), Expect = 1e-17
Identities = 47/96 (48%), Positives = 68/96 (70%)
Frame = +1
Query: 25 NAVVYTAMITGYAKCADLPAARLVFDRMVERDVVSWTAMISAYSRAGLYDEAVDLCKLML 204
N V + AMI GY K +L AAR +FD M +RDV+SWT MI++YS+AG + EA+ L K M+
Sbjct: 243 NLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMM 302
Query: 205 KIGGQIKPNRTTVSNVVSACAHLGSIELARWIKDYI 312
+ ++KP+ TV++V+SACAH GS+++ DYI
Sbjct: 303 E--SKVKPDEITVASVLSACAHTGSLDVGEAAHDYI 336
Score = 58.2 bits (139), Expect = 7e-07
Identities = 33/93 (35%), Positives = 49/93 (52%)
Frame = +1
Query: 34 VYTAMITGYAKCADLPAARLVFDRMVERDVVSWTAMISAYSRAGLYDEAVDLCKLMLKIG 213
V A+I Y C L A+ VFD M ERD+VSW +++ Y + + E + + + M G
Sbjct: 114 VSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAG 173
Query: 214 GQIKPNRTTVSNVVSACAHLGSIELARWIKDYI 312
+K + T+ VV AC LG +A + DYI
Sbjct: 174 --VKGDAVTMVKVVLACTSLGEWGVADAMVDYI 204
>ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 92.0 bits (227), Expect = 4e-17
Identities = 45/96 (46%), Positives = 69/96 (71%)
Frame = +1
Query: 25 NAVVYTAMITGYAKCADLPAARLVFDRMVERDVVSWTAMISAYSRAGLYDEAVDLCKLML 204
N V + AMI GY K +L AAR +FD M RDV+SWT+MIS+YS+AG + +AV L + M+
Sbjct: 961 NMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMM 1020
Query: 205 KIGGQIKPNRTTVSNVVSACAHLGSIELARWIKDYI 312
++KP+ TV++V+SACAH+G++++ + +YI
Sbjct: 1021 VT--KVKPDEITVASVLSACAHIGALDVGEAVHEYI 1054
Score = 61.6 bits (148), Expect = 6e-08
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = +1
Query: 19 NVNAVVYT--AMITGYAKCADLPAARLVFDRMVERDVVSWTAMISAYSRAGLYDEAVDLC 192
+VNA +Y A+I Y KC + VF+ M +RD VSWT++I+ + G D A++L
Sbjct: 1058 DVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLF 1117
Query: 193 KLMLKIGGQIKPNRTTVSNVVSACAHLGSIE 285
LML+ G ++P T V+ ACAH G ++
Sbjct: 1118 SLMLREG--VRPTHGTFVGVLLACAHAGVVD 1146
Score = 56.6 bits (135), Expect = 2e-06
Identities = 35/93 (37%), Positives = 49/93 (52%)
Frame = +1
Query: 34 VYTAMITGYAKCADLPAARLVFDRMVERDVVSWTAMISAYSRAGLYDEAVDLCKLMLKIG 213
V A+I GYA +L AR VFD M ERD+VSW ++I Y R Y E + + + M
Sbjct: 832 VSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRM-- 889
Query: 214 GQIKPNRTTVSNVVSACAHLGSIELARWIKDYI 312
+K + T+ VV AC LG + + +YI
Sbjct: 890 ADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYI 922
>tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 91.7 bits (226), Expect = 6e-17
Identities = 39/96 (40%), Positives = 70/96 (72%)
Frame = +1
Query: 25 NAVVYTAMITGYAKCADLPAARLVFDRMVERDVVSWTAMISAYSRAGLYDEAVDLCKLML 204
N V AMIT YAK +L +A+ +FD++ +D++SW++MI AYS+A + ++++L + M
Sbjct: 1106 NTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQ 1165
Query: 205 KIGGQIKPNRTTVSNVVSACAHLGSIELARWIKDYI 312
+ ++KP+ +++V+SACAHLG+++L +WI DY+
Sbjct: 1166 R--AKVKPDAVVIASVLSACAHLGALDLGKWIHDYV 1199
Score = 73.2 bits (178), Expect = 2e-11
Identities = 40/95 (42%), Positives = 58/95 (61%)
Frame = +1
Query: 25 NAVVYTAMITGYAKCADLPAARLVFDRMVERDVVSWTAMISAYSRAGLYDEAVDLCKLML 204
N V + MITG+A ++ ARL+FD+M R+VVSWT +I Y+RA LY EA+ L + M+
Sbjct: 544 NVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMM 603
Query: 205 KIGGQIKPNRTTVSNVVSACAHLGSIELARWIKDY 309
G I P+ TV V+ A ++LG I + + Y
Sbjct: 604 --AGGISPSEITVLAVIPAISNLGGILMGEMLNGY 636
Score = 63.9 bits (154), Expect = 1e-08
Identities = 35/93 (37%), Positives = 53/93 (56%)
Frame = +1
Query: 34 VYTAMITGYAKCADLPAARLVFDRMVERDVVSWTAMISAYSRAGLYDEAVDLCKLMLKIG 213
V ++I YA C L AR VF+ M+ +DVVSW ++I YS+ E + L KLM
Sbjct: 977 VSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQ--A 1034
Query: 214 GQIKPNRTTVSNVVSACAHLGSIELARWIKDYI 312
+++ ++ T+ V+SAC HLG +A + YI
Sbjct: 1035 EEVQADKVTMVKVISACTHLGDWSMADCMVRYI 1067
Score = 61.6 bits (148), Expect = 6e-08
Identities = 36/88 (40%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = +1
Query: 25 NAVVYTAMITGYAKCADLPAARLVFDRMVER-DVVSWTAMISAYSRAGLYDEAVDLCKLM 201
+A V ++I YAK + + VFD M++R ++VSWT++IS ++ GL EA++L M
Sbjct: 645 DARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEM 704
Query: 202 LKIGGQIKPNRTTVSNVVSACAHLGSIE 285
+ G IKPNR T +V++AC+H G +E
Sbjct: 705 RRAG--IKPNRITFLSVINACSHGGLVE 730