BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00031249
         (887 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containi...   397   e-108
ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containi...   369   e-100
dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]    365   6e-99
ref|XP_002517094.1| pentatricopeptide repeat-containing protein,...   364   2e-98
ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea ma...   363   4e-98

>ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
            mitochondrial [Vitis vinifera]
          Length = 535

 Score =  397 bits (1021), Expect = e-108
 Identities = 192/295 (65%), Positives = 239/295 (81%)
 Frame = -2

Query: 886  LSKDTVVMNVLLDSLCKERGVEYAWDAFLEFKNEIPPNSHTFNVLIHGFCKARQLNKAQW 707
            + KDT+ MN L+D+L KE  VE+A D F+EFK+ I  N HTFNVLIHG+CKAR+++ A  
Sbjct: 219  VKKDTLAMNTLMDALVKENSVEHANDVFVEFKDSILLNPHTFNVLIHGWCKARKMDNALK 278

Query: 706  TLDEMERCGILPCVISYTSLIEAYCREKDFRKVDAILDEMQSKGCAPNVVTYTIVMHSLG 527
            ++ EM+  G  P VISYTS++EAYCREKDFRKV+++L+EM+ KGC PNVVTYTIVMH+LG
Sbjct: 279  SMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALG 338

Query: 526  KVKETYEALEIYERMKTNGCVPDTSFYNSFIYILGKAGRLQDASNIFEEMSKNGCTPDVT 347
            K KE  +ALE+YE+MK + CVPDTSFY+S IYIL KAGRL+DA ++FE+M+K G  PDV 
Sbjct: 339  KGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVL 398

Query: 346  TYNTMISSACEHSQVQTALKLLLEMEERLCKPDLKTYAPLLKICCQNNWMKILFFLLNDM 167
            TYNTMIS+AC HSQ + ALKLLL+MEE  CKPDL TY+PLLK+CC+NN MK+L  LLN M
Sbjct: 399  TYNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHM 458

Query: 166  FKKDISIELGTYCLLVNGLCKSGNLEQACLFFEEMVLKGFVPWPSTYSRLVEKLK 2
            FK DIS+E+GTY LLV+GLCKSG LE ACLFFEEMV KG VP   T+  L+++L+
Sbjct: 459  FKNDISLEVGTYSLLVHGLCKSGKLEHACLFFEEMVSKGLVPKDCTHKLLLKELE 513



 Score = 56.2 bits (134), Expect = 1e-05
 Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 1/170 (0%)
 Frame = -2

Query: 877 DTVVMNVLLDSLCKERGVEYAWDAFLEF-KNEIPPNSHTFNVLIHGFCKARQLNKAQWTL 701
           DT   + L+  L K   ++ A D F +  K    P+  T+N +I   C   Q   A   L
Sbjct: 361 DTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLL 420

Query: 700 DEMERCGILPCVISYTSLIEAYCREKDFRKVDAILDEMQSKGCAPNVVTYTIVMHSLGKV 521
            +ME     P + +Y+ L++  CR    + + A+L+ M     +  V TY++++H L K 
Sbjct: 421 LKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKS 480

Query: 520 KETYEALEIYERMKTNGCVPDTSFYNSFIYILGKAGRLQDASNIFEEMSK 371
            +   A   +E M + G VP    +   +  L K   ++    + + MS+
Sbjct: 481 GKLEHACLFFEEMVSKGLVPKDCTHKLLLKELEKKSMVEAKERVEKLMSQ 530


>ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
            mitochondrial-like [Brachypodium distachyon]
          Length = 570

 Score =  369 bits (947), Expect = e-100
 Identities = 172/292 (58%), Positives = 226/292 (77%)
 Frame = -2

Query: 880  KDTVVMNVLLDSLCKERGVEYAWDAFLEFKNEIPPNSHTFNVLIHGFCKARQLNKAQWTL 701
            +DT  MN LLD+LCKE+ V+ A   F E +  +PP+  +FN L+HG+C+AR LN+A+ T+
Sbjct: 228  RDTKAMNALLDTLCKEKSVKRARGVFQELRGVVPPDESSFNTLVHGWCQARMLNEARDTM 287

Query: 700  DEMERCGILPCVISYTSLIEAYCREKDFRKVDAILDEMQSKGCAPNVVTYTIVMHSLGKV 521
             EME  G  P VI+YTSLIEAYC EKDF+ V AIL+EM SKGC PNV+TYTIVMH+LGK 
Sbjct: 288  KEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHALGKA 347

Query: 520  KETYEALEIYERMKTNGCVPDTSFYNSFIYILGKAGRLQDASNIFEEMSKNGCTPDVTTY 341
              T EAL++++++K +GCVPD SFYNS IYILG+AGRL+DA+++F+EM + G  P V  +
Sbjct: 348  GRTQEALDVFDKVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMCRTGIPPTVAIF 407

Query: 340  NTMISSACEHSQVQTALKLLLEMEERLCKPDLKTYAPLLKICCQNNWMKILFFLLNDMFK 161
            NTMIS+AC+HSQ + ALK+L++MEE+ CKPD+KTY PLLK+CC+  WMKIL FL+  MF+
Sbjct: 408  NTMISAACDHSQAENALKILVKMEEQSCKPDIKTYTPLLKLCCKRQWMKILPFLICHMFR 467

Query: 160  KDISIELGTYCLLVNGLCKSGNLEQACLFFEEMVLKGFVPWPSTYSRLVEKL 5
            KDIS +  TY LLV  LC++G   Q+CLF EEMVLKGF+P   T+  ++EKL
Sbjct: 468  KDISPDFSTYILLVTWLCRNGKPAQSCLFLEEMVLKGFMPKQETFDLVMEKL 519


>dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score =  365 bits (938), Expect = 6e-99
 Identities = 169/292 (57%), Positives = 224/292 (76%)
 Frame = -2

Query: 880  KDTVVMNVLLDSLCKERGVEYAWDAFLEFKNEIPPNSHTFNVLIHGFCKARQLNKAQWTL 701
            KDT  MNVLLD+LCKER V+ A  AF E +  +PP+  +FN L+HG+CKAR +N+A+  +
Sbjct: 228  KDTTAMNVLLDTLCKERSVKRARGAFQELRGSVPPDESSFNTLVHGWCKARMMNEARDMM 287

Query: 700  DEMERCGILPCVISYTSLIEAYCREKDFRKVDAILDEMQSKGCAPNVVTYTIVMHSLGKV 521
             EME  G  P VI+YTSLIEAYC EKDF+ V AIL+EM+SKGC PNV+TYTIVMH+LGK 
Sbjct: 288  KEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYTIVMHALGKA 347

Query: 520  KETYEALEIYERMKTNGCVPDTSFYNSFIYILGKAGRLQDASNIFEEMSKNGCTPDVTTY 341
              T EAL+I+++++ +GC PD SFYNS IYILG+AGRL+DA+++ ++M   G  P V T+
Sbjct: 348  GRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDKMRMTGVRPTVATF 407

Query: 340  NTMISSACEHSQVQTALKLLLEMEERLCKPDLKTYAPLLKICCQNNWMKILFFLLNDMFK 161
            NT+IS+AC+HSQ + ALK+L++MEE+ CKPD+KTY PLLK+CC+  W+K+L FL+  MF+
Sbjct: 408  NTLISAACDHSQAENALKMLVKMEEQSCKPDIKTYTPLLKLCCKRQWIKVLRFLICHMFR 467

Query: 160  KDISIELGTYCLLVNGLCKSGNLEQACLFFEEMVLKGFVPWPSTYSRLVEKL 5
            KDI+ +  TY LLV  LC++G   Q+CLF EEMVLKGF P   T+  + EKL
Sbjct: 468  KDITPDFSTYTLLVTWLCRNGKPAQSCLFLEEMVLKGFAPKKETFDLVAEKL 519



 Score = 94.4 bits (233), Expect = 3e-17
 Identities = 56/216 (25%), Positives = 108/216 (50%)
 Frame = -2

Query: 661 SYTSLIEAYCREKDFRKVDAILDEMQSKGCAPNVVTYTIVMHSLGKVKETYEALEIYERM 482
           SY S+++   + K F  +  ++ +M   G   ++ T T VM  L       +A++ + +M
Sbjct: 162 SYNSMVDILGKFKQFDLMWGLISQMDEIGGLVSLATMTKVMRRLAGASRWTDAIDAFNKM 221

Query: 481 KTNGCVPDTSFYNSFIYILGKAGRLQDASNIFEEMSKNGCTPDVTTYNTMISSACEHSQV 302
              G V DT+  N  +  L K   ++ A   F+E+ +    PD +++NT++   C+   +
Sbjct: 222 DQFGVVKDTTAMNVLLDTLCKERSVKRARGAFQEL-RGSVPPDESSFNTLVHGWCKARMM 280

Query: 301 QTALKLLLEMEERLCKPDLKTYAPLLKICCQNNWMKILFFLLNDMFKKDISIELGTYCLL 122
             A  ++ EMEE   KP + TY  L++  C     + ++ +LN+M  K     + TY ++
Sbjct: 281 NEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYTIV 340

Query: 121 VNGLCKSGNLEQACLFFEEMVLKGFVPWPSTYSRLV 14
           ++ L K+G  ++A   F+++   G  P  S Y+ L+
Sbjct: 341 MHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLI 376


>ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223543729|gb|EEF45257.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 549

 Score =  364 bits (934), Expect = 2e-98
 Identities = 172/293 (58%), Positives = 225/293 (76%)
 Frame = -2

Query: 880  KDTVVMNVLLDSLCKERGVEYAWDAFLEFKNEIPPNSHTFNVLIHGFCKARQLNKAQWTL 701
            KD   +NVL+D+L KE  VE+A+ AF+EFK+ I  +  +FN+L+HG+CKAR+L+ A+  +
Sbjct: 233  KDIEALNVLMDALVKEGSVEHAYSAFMEFKDSIHVDFQSFNILLHGYCKARKLDDARKIM 292

Query: 700  DEMERCGILPCVISYTSLIEAYCREKDFRKVDAILDEMQSKGCAPNVVTYTIVMHSLGKV 521
            DEM++ G  P V+SYT  IE YC+ KDFR V+AI  EMQ K C PNV+TYTI MH+LGK 
Sbjct: 293  DEMDKQGFQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFMHALGKA 352

Query: 520  KETYEALEIYERMKTNGCVPDTSFYNSFIYILGKAGRLQDASNIFEEMSKNGCTPDVTTY 341
            K+  +ALE+YE MK+N CVPD SFY+S I++L ++GRL+DA ++FE+M K G +PD+ TY
Sbjct: 353  KQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTY 412

Query: 340  NTMISSACEHSQVQTALKLLLEMEERLCKPDLKTYAPLLKICCQNNWMKILFFLLNDMFK 161
            NTMI+SAC H + + ALKLL  MEE  CKPD++TYAPLLK+CC+   +K+L FLLN MFK
Sbjct: 413  NTMITSACTHLEEENALKLLRRMEEDSCKPDIQTYAPLLKMCCRKKRIKVLKFLLNHMFK 472

Query: 160  KDISIELGTYCLLVNGLCKSGNLEQACLFFEEMVLKGFVPWPSTYSRLVEKLK 2
             +ISI+LGTY LLV GLCKSG LE AC FFEEMV+KG +P   TY  LVE+L+
Sbjct: 473  NNISIDLGTYVLLVGGLCKSGKLELACSFFEEMVMKGLIPRDRTYKMLVEELE 525



 Score = 83.2 bits (204), Expect = 7e-14
 Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 1/226 (0%)
 Frame = -2

Query: 877 DTVVMNVLLDSLCKERGVEYAWDAFLEFKNE-IPPNSHTFNVLIHGFCKARQLNKAQWTL 701
           + V     ++  CK +        F E + +   PN  T+ + +H   KA+Q+NKA    
Sbjct: 303 NVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVNKALEVY 362

Query: 700 DEMERCGILPCVISYTSLIEAYCREKDFRKVDAILDEMQSKGCAPNVVTYTIVMHSLGKV 521
           + M+    +P    Y+SLI    +    +    + ++M+ +G +P+++TY  ++ S    
Sbjct: 363 EMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSACTH 422

Query: 520 KETYEALEIYERMKTNGCVPDTSFYNSFIYILGKAGRLQDASNIFEEMSKNGCTPDVTTY 341
            E   AL++  RM+ + C PD   Y   + +  +  R++    +   M KN  + D+ TY
Sbjct: 423 LEEENALKLLRRMEEDSCKPDIQTYAPLLKMCCRKKRIKVLKFLLNHMFKNNISIDLGTY 482

Query: 340 NTMISSACEHSQVQTALKLLLEMEERLCKPDLKTYAPLLKICCQNN 203
             ++   C+  +++ A     EM  +   P  +TY  L++   QNN
Sbjct: 483 VLLVGGLCKSGKLELACSFFEEMVMKGLIPRDRTYKMLVEELEQNN 528


>ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
            gi|238014984|gb|ACR38527.1| unknown [Zea mays]
            gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein
            ZEAMMB73_971718 [Zea mays]
          Length = 623

 Score =  363 bits (931), Expect = 4e-98
 Identities = 170/295 (57%), Positives = 223/295 (75%)
 Frame = -2

Query: 886  LSKDTVVMNVLLDSLCKERGVEYAWDAFLEFKNEIPPNSHTFNVLIHGFCKARQLNKAQW 707
            ++KDT  MNVLLD+LCKER V+ A  AF   K  IPP+  +FN L+HG+CKAR L +A+ 
Sbjct: 263  VAKDTKAMNVLLDTLCKERSVKRARGAFQALKGTIPPDESSFNTLVHGWCKARMLKEARE 322

Query: 706  TLDEMERCGILPCVISYTSLIEAYCREKDFRKVDAILDEMQSKGCAPNVVTYTIVMHSLG 527
            T+ EMER G  P V +YT LIEAYC EKDF+ VD ILDEM +KGC PN++TYTIVMH+LG
Sbjct: 323  TMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYTIVMHALG 382

Query: 526  KVKETYEALEIYERMKTNGCVPDTSFYNSFIYILGKAGRLQDASNIFEEMSKNGCTPDVT 347
            K   T EAL+ ++++K +GC  D SFYN  IYIL +AGRLQDA+ + EEM + G +P++T
Sbjct: 383  KAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTGISPNLT 442

Query: 346  TYNTMISSACEHSQVQTALKLLLEMEERLCKPDLKTYAPLLKICCQNNWMKILFFLLNDM 167
            T+NT+IS+AC+HS  + ALKLL++MEE+ C PD+KTY PLLK+CC+  W+K L FL+  M
Sbjct: 443  TFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKWVKTLLFLICHM 502

Query: 166  FKKDISIELGTYCLLVNGLCKSGNLEQACLFFEEMVLKGFVPWPSTYSRLVEKLK 2
            F+KDI+ +  TY LLV  LC++G L Q+CLF EEMVLKGF P  +T+  ++EKLK
Sbjct: 503  FRKDITPDFSTYTLLVCWLCRNGRLTQSCLFLEEMVLKGFTPQQATFDLVLEKLK 557



 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 55/216 (25%), Positives = 98/216 (45%), Gaps = 4/216 (1%)
 Frame = -2

Query: 871  VVMNVLLDSLCKERGVEYAWDAFLEFKNE-IPPNSHTFNVLIHGFCKARQLNKAQWTLDE 695
            +   +++ +L K    + A D F + K +    ++  +N LI+  C+A +L  A + ++E
Sbjct: 372  ITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEE 431

Query: 694  MERCGILPCVISYTSLIEAYCREKDFRKVDAILDEMQSKGCAPNVVTYTIVMHSLGKVKE 515
            M R GI P + ++ +LI A C          +L +M+ + C P++ TYT ++    + K 
Sbjct: 432  MHRTGISPNLTTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKW 491

Query: 514  TYEALEIYERMKTNGCVPDTSFYNSFIYILGKAGRLQDASNIFEEMSKNGCTPDVTTYNT 335
                L +   M      PD S Y   +  L + GRL  +    EEM   G TP   T++ 
Sbjct: 492  VKTLLFLICHMFRKDITPDFSTYTLLVCWLCRNGRLTQSCLFLEEMVLKGFTPQQATFDL 551

Query: 334  MISSACEHSQVQTALKL-LLEM--EERLCKPDLKTY 236
            ++        +    K+ LL M  E   C+  + +Y
Sbjct: 552  VLEKLKNMHMLSAVRKIQLLRMHTEGTRCRSGVPSY 587