BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00031225
         (330 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera]    73   2e-11
gb|ABG37650.2| CCHC-type integrase [Populus trichocarpa]               70   2e-10
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]      69   4e-10
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    69   5e-10
gb|EEC80484.1| hypothetical protein OsI_22718 [Oryza sativa Indi...    66   3e-09

>emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera]
          Length = 1131

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 32/125 (25%)
 Frame = +3

Query: 51  YNSGNYPN---GWNPIPRPTCQICNKVGHVALDCHNR----------------------- 152
           Y+S N+ N   G N   +P CQ+C K GH+A++C++R                       
Sbjct: 238 YSSRNFNNVSGGSNG--KPQCQVCGKYGHIAINCYHRFDQTYQPTMNNHLAAMVATPSTV 295

Query: 153 ------MNHGATNHVTHDLSNLNLLSEYDGSNKLVVGNGEGLSISNIGSSTLDTGLKQFS 314
                 M+ GAT+H+T +L+ LN  + + GS+K++VGNG  L+ISNIG ST+ +  +  +
Sbjct: 296 GDESWYMDTGATHHLTPNLNKLNSHTPFAGSDKVMVGNGNRLNISNIGHSTISSVSRSLN 355

Query: 315 LTNVL 329
           L N+L
Sbjct: 356 LKNIL 360


>gb|ABG37650.2| CCHC-type integrase [Populus trichocarpa]
          Length = 441

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 25/111 (22%)
 Frame = +3

Query: 72  NGWNPI-PR---PTCQICNKVGHVALDC----------------HNR-----MNHGATNH 176
           NGW  + PR   P CQ+C+++GHVA  C                H +     ++  A+++
Sbjct: 283 NGWKSMGPRRYQPKCQLCDQLGHVAKQCPKVHFSEPTANCVSTSHPKDTKWLIDSAASHN 342

Query: 177 VTHDLSNLNLLSEYDGSNKLVVGNGEGLSISNIGSSTLDTGLKQFSLTNVL 329
           +T DLSNL++ SEYDG+N++V+G+G GL +S+IGS    +  + F L + L
Sbjct: 343 ITGDLSNLSVHSEYDGTNEVVLGDGSGLRVSHIGSLVFHSPTRTFHLKDTL 393


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 24/114 (21%)
 Frame = +3

Query: 60  GNYPNGWNPIPRPTCQICNKVGHVALDCHN------------------------RMNHGA 167
           G    G N  PRPTCQ+C+KVGHV  DC +                         ++ GA
Sbjct: 262 GRGNGGRNFKPRPTCQLCSKVGHVVADCWHCYDDSFVPDARVAAAASYGVDSNWYVDTGA 321

Query: 168 TNHVTHDLSNLNLLSEYDGSNKLVVGNGEGLSISNIGSSTLDTGLKQFSLTNVL 329
           T+H+T++L  L     Y+G  ++   +G G+ I +IG ST+ T  +   L N+L
Sbjct: 322 TDHITNELEKLTTRDRYNGKEQIHTASGSGMDIKHIGQSTIRTPTRNLYLRNIL 375


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 26/105 (24%)
 Frame = +3

Query: 93  RPTCQICNKVGHVALDCHNRMNH--------------------------GATNHVTHDLS 194
           RP CQ+C++VGH AL+C  R +                           GAT+H+T DL 
Sbjct: 279 RPRCQVCSRVGHTALNCWYRFDENYVPDQRSANSAAHQNGSNVPWYTDTGATDHITGDLD 338

Query: 195 NLNLLSEYDGSNKLVVGNGEGLSISNIGSSTLDTGLKQFSLTNVL 329
            L +  +Y G+++++  NG G++ISNIG++ + T  +   L +VL
Sbjct: 339 RLTMHDKYTGTDQIIAANGTGMTISNIGNAIVPTSSRSLHLRSVL 383


>gb|EEC80484.1| hypothetical protein OsI_22718 [Oryza sativa Indica Group]
          Length = 506

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 25/115 (21%)
 Frame = +3

Query: 60  GNYPNGWNPIPRPTCQICNKVGHVALDCHNR-------------------------MNHG 164
           GN   G N   RP CQ+C K GHVA +C +R                         ++ G
Sbjct: 258 GNQTRGGND--RPICQVCLKRGHVAAECWHRYDETYVPDERSAAAAAAYGIDTNWYLDTG 315

Query: 165 ATNHVTHDLSNLNLLSEYDGSNKLVVGNGEGLSISNIGSSTLDTGLKQFSLTNVL 329
           AT+H+T++L  L++  +Y G +K+   +G G+ I +IG S + T  ++  L N+L
Sbjct: 316 ATDHITNELDKLDVWEKYKGGDKIHTASGAGMEIKHIGDSVIHTPTRELHLKNIL 370