BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00031034
         (430 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003598202.1| 60S ribosomal protein L23 [Medicago truncatu...    60   1e-07
ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub...    60   2e-07
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ...    59   4e-07
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    59   4e-07
ref|XP_003613174.1| hypothetical protein MTR_5g033620 [Medicago ...    58   9e-07

>ref|XP_003598202.1| 60S ribosomal protein L23 [Medicago truncatula]
           gi|355487250|gb|AES68453.1| 60S ribosomal protein L23
           [Medicago truncatula]
          Length = 547

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 36/88 (40%), Positives = 48/88 (54%)
 Frame = -3

Query: 383 EEGEARGLLIAIQWAYSLGYSTVIFELDCKAVVDFLHGEKPNIGATTKNILEDARLFADM 204
           +E EA GL  AI W   L  S V  ELDCK VVD ++ +K N  A   +I++D R     
Sbjct: 108 QEAEAVGLRDAILWLGQLELSNVQLELDCKLVVDSIY-DKNNNQAEFGSIIDDCRSLLQQ 166

Query: 203 FYFISILYVRRSGNVVTHTLAKKAVSWP 120
           F    I +VRR  NVV H+ A+ ++  P
Sbjct: 167 FTNFKISFVRRQANVVAHSFARVSIFQP 194


>ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
            truncatula] gi|355513943|gb|AES95566.1| Replication
            protein A 70 kDa DNA-binding subunit [Medicago
            truncatula]
          Length = 1723

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 34/108 (31%), Positives = 54/108 (50%)
 Frame = -3

Query: 380  EGEARGLLIAIQWAYSLGYSTVIFELDCKAVVDFLHGEKPNIGATTKNILEDARLFADMF 201
            EGEA GLL AI+WA     + + FELD K VV   H  + ++      I E    F+  F
Sbjct: 1616 EGEAIGLLYAIRWAKEQNLNNITFELDSKRVVYSFHNTRNDVSDLGAIIRECRTTFSSFF 1675

Query: 200  YFISILYVRRSGNVVTHTLAKKAVSWPFLIWENIAPPWLDEQLLLDNR 57
                + ++RR  N V H+LA+ A  +  + +  + P  + + L+ + R
Sbjct: 1676 TNSRVEFIRRQANEVVHSLARAATFYASIHYFTVLPDCIQDVLINEMR 1723


>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
           reverse transcriptase [Arabidopsis thaliana]
           gi|332641254|gb|AEE74775.1| RNase H domain-containing
           protein [Arabidopsis thaliana]
          Length = 484

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
 Frame = -3

Query: 392 HTAE--EGEARGLLIAIQWAYSLGYSTVIFELDCKAVVDFLHGEKPNIGATTKNILEDAR 219
           HT+   E E + LL A+Q  +  GY+ V  E DC+ +++ ++G   +  ++  N LED  
Sbjct: 372 HTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLING--ISFHSSLANHLEDIS 429

Query: 218 LFADMFYFISILYVRRSGNVVTHTLAKKAVSW-PFLIWENIAPPWLDEQLLLDN 60
            +A+ F  I   ++RR GN + H LAK   ++  F       P WLD     D+
Sbjct: 430 FWANKFASIQFGFIRRKGNKLAHVLAKYGCTYSTFYSGSGSLPIWLDRYFCNDS 483


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
 Frame = -3

Query: 392  HTAE--EGEARGLLIAIQWAYSLGYSTVIFELDCKAVVDFLHGEKPNIGATTKNILEDAR 219
            HT+   E E + LL A+Q  +  GY+ V  E DC+ +++ ++G   +  ++  N LED  
Sbjct: 1412 HTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLING--ISFHSSLANHLEDIS 1469

Query: 218  LFADMFYFISILYVRRSGNVVTHTLAKKAVSW-PFLIWENIAPPWLDEQLLLDN 60
             +A+ F  I   ++RR GN + H LAK   ++  F       P WLD     D+
Sbjct: 1470 FWANKFASIQFGFIRRKGNKLAHVLAKYGCTYSTFYSGSGSLPIWLDRYFCNDS 1523


>ref|XP_003613174.1| hypothetical protein MTR_5g033620 [Medicago truncatula]
           gi|355514509|gb|AES96132.1| hypothetical protein
           MTR_5g033620 [Medicago truncatula]
          Length = 119

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
 Frame = -3

Query: 383 EEGEARGLLIAIQWAYSLGYSTVIFELDCKAVVDFLHGEKPNIGATTKNILEDARLFADM 204
           E GEA GLL AIQW + L  + V FE+D K VVD+ +    N+ +    ILE+ +   ++
Sbjct: 11  EIGEALGLLYAIQWVHELQLTNVDFEMDAKLVVDYFNKGSNNV-SEFGAILEECKRCRNV 69

Query: 203 FYFIS-ILYVRRSGNVVTHTLAKKAV 129
           ++  S + + RR  N V HTLA++A+
Sbjct: 70  YFENSKVKFSRRQANEVAHTLAREAL 95