BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00030955
         (442 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001240152.1| ribulose bisphosphate carboxylase/oxygenase ...   241   3e-62
ref|NP_001242531.1| ribulose bisphosphate carboxylase/oxygenase ...   240   1e-61
gb|AFD97617.1| rubisco activase (chloroplast) [Ammopiptanthus mo...   238   3e-61
ref|XP_003616450.1| Ribulose-1 5-bisphosphate carboxylase/oxygen...   235   3e-60
ref|XP_003632187.1| PREDICTED: ribulose bisphosphate carboxylase...   231   3e-59

>ref|NP_001240152.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
           chloroplastic-like [Glycine max]
           gi|290766479|gb|ADD60242.1| alpha-form rubisco activase
           [Glycine max] gi|290766489|gb|ADD60247.1| alpha-form
           rubisco activase [Glycine max]
          Length = 478

 Score =  241 bits (616), Expect = 3e-62
 Identities = 122/147 (82%), Positives = 133/147 (90%), Gaps = 3/147 (2%)
 Frame = -3

Query: 434 MAASVSTVGAVK-TPLSLNGSGAGTSVPSSAFFGTSLKKVTSSRLPNAKVSSGSFKIVAA 258
           MAASVSTVGAV   PLSLN SGAG SVPSSAFFGTSLKKV +SR+PN K+SSGSFKIVAA
Sbjct: 1   MAASVSTVGAVNGAPLSLNSSGAGASVPSSAFFGTSLKKVIASRVPNVKISSGSFKIVAA 60

Query: 257 E--IDEDKQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQQAGTHYAVMSSYEYIS 84
           E  IDE +QT+KDRWKGLAYD+SDDQQDITRGKG+VDSLFQAPQ  GTHYA+MSSYEY+S
Sbjct: 61  EKEIDEKQQTDKDRWKGLAYDVSDDQQDITRGKGLVDSLFQAPQDTGTHYAIMSSYEYLS 120

Query: 83  TGLREYNLDNTMDGLYIAPAFMDKLVV 3
           TGL++YNLDN MDG YIAPAFMDKLVV
Sbjct: 121 TGLKQYNLDNNMDGFYIAPAFMDKLVV 147


>ref|NP_001242531.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
           chloroplastic-like [Glycine max]
           gi|290766483|gb|ADD60244.1| rubisco activase [Glycine
           max]
          Length = 478

 Score =  240 bits (612), Expect = 1e-61
 Identities = 122/146 (83%), Positives = 133/146 (91%), Gaps = 3/146 (2%)
 Frame = -3

Query: 434 MAASVSTVGAV-KTPLSLNGSGAGTSVPSSAFFGTSLKKVTSSRLPNAKVSSGSFKIVAA 258
           MAASVST+GAV + PLSLN S AG SVPSSAFFGTSLKKVT+SR+PN K+SSGSFKIVAA
Sbjct: 1   MAASVSTIGAVNRAPLSLNSSEAGDSVPSSAFFGTSLKKVTASRVPNVKISSGSFKIVAA 60

Query: 257 E--IDEDKQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQQAGTHYAVMSSYEYIS 84
           E  IDE +QT KDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQ+ GTHYAVMSS+EY+S
Sbjct: 61  EKEIDEQQQTNKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQETGTHYAVMSSFEYLS 120

Query: 83  TGLREYNLDNTMDGLYIAPAFMDKLV 6
           TGL++YNLDN MDG YIAPAFMDKLV
Sbjct: 121 TGLKQYNLDNNMDGFYIAPAFMDKLV 146


>gb|AFD97617.1| rubisco activase (chloroplast) [Ammopiptanthus mongolicus]
          Length = 439

 Score =  238 bits (608), Expect = 3e-61
 Identities = 124/146 (84%), Positives = 134/146 (91%), Gaps = 2/146 (1%)
 Frame = -3

Query: 434 MAASVSTVGAV-KTPLSLNGSGAGTSVPSSAFFGTSLKKVTSSRLPNA-KVSSGSFKIVA 261
           MAASVSTVGAV +TPL+LNGSG G SVPSSAFFG++LKKV +SRLPN  KVSSGSFK+VA
Sbjct: 1   MAASVSTVGAVNRTPLNLNGSGGGASVPSSAFFGSNLKKV-ASRLPNTTKVSSGSFKVVA 59

Query: 260 AEIDEDKQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQQAGTHYAVMSSYEYIST 81
           AEID+ KQT+KDRWKG AYDISDDQQDITRGKGMVDSLFQAP  AGTHYAV+SSYEYIST
Sbjct: 60  AEIDDSKQTDKDRWKGPAYDISDDQQDITRGKGMVDSLFQAPSDAGTHYAVLSSYEYIST 119

Query: 80  GLREYNLDNTMDGLYIAPAFMDKLVV 3
           GLREYNLDN +DG YIAPAFMDKLVV
Sbjct: 120 GLREYNLDNNVDGFYIAPAFMDKLVV 145


>ref|XP_003616450.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
           truncatula] gi|355517785|gb|AES99408.1| Ribulose-1
           5-bisphosphate carboxylase/oxygenase activase [Medicago
           truncatula]
          Length = 476

 Score =  235 bits (599), Expect = 3e-60
 Identities = 122/145 (84%), Positives = 130/145 (89%), Gaps = 1/145 (0%)
 Frame = -3

Query: 434 MAASVSTVGAVK-TPLSLNGSGAGTSVPSSAFFGTSLKKVTSSRLPNAKVSSGSFKIVAA 258
           M ASVS V AV  TPLSLN SGA  SVPSS+FFGTSLKKVTS RLPN KVSSG FKIVAA
Sbjct: 1   MVASVSAVRAVSGTPLSLNSSGAVASVPSSSFFGTSLKKVTS-RLPNTKVSSGRFKIVAA 59

Query: 257 EIDEDKQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQQAGTHYAVMSSYEYISTG 78
           EI+E KQT+KDRW+GLAYD SDDQQDITRGKGMVD++FQAPQ +GTHYAVMSSYEYISTG
Sbjct: 60  EINESKQTDKDRWRGLAYDTSDDQQDITRGKGMVDTVFQAPQDSGTHYAVMSSYEYISTG 119

Query: 77  LREYNLDNTMDGLYIAPAFMDKLVV 3
           LR+YNLDNTMDG YIAPAFMDKLVV
Sbjct: 120 LRQYNLDNTMDGFYIAPAFMDKLVV 144


>ref|XP_003632187.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
           chloroplastic isoform 2 [Vitis vinifera]
          Length = 440

 Score =  231 bits (590), Expect = 3e-59
 Identities = 118/145 (81%), Positives = 132/145 (91%), Gaps = 1/145 (0%)
 Frame = -3

Query: 434 MAASVSTVGAV-KTPLSLNGSGAGTSVPSSAFFGTSLKKVTSSRLPNAKVSSGSFKIVAA 258
           MA +VST+GAV +TPLSLN SG G SVPSSAFFG+SLKKV SSR  + K++SGSFK+VA 
Sbjct: 1   MATTVSTIGAVNRTPLSLNSSGTGASVPSSAFFGSSLKKV-SSRFTHPKIASGSFKVVA- 58

Query: 257 EIDEDKQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQQAGTHYAVMSSYEYISTG 78
           EIDE++QTEKDRWKGLAYD+SDDQQDITRGKGMVDSLFQAP Q+GTHYAVMSSYEY+STG
Sbjct: 59  EIDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTG 118

Query: 77  LREYNLDNTMDGLYIAPAFMDKLVV 3
           LR+YNLDN MDG YIAPAFMDKLVV
Sbjct: 119 LRQYNLDNNMDGFYIAPAFMDKLVV 143