BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00030662
         (1346 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containi...   479   e-133
ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containi...   440   e-121
ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containi...   432   e-119
ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis th...   392   e-106
ref|XP_002885286.1| pentatricopeptide repeat-containing protein ...   382   e-103

>ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970
            [Vitis vinifera] gi|298204853|emb|CBI34160.3| unnamed
            protein product [Vitis vinifera]
          Length = 471

 Score =  479 bits (1234), Expect = e-133
 Identities = 242/380 (63%), Positives = 298/380 (78%), Gaps = 3/380 (0%)
 Frame = +1

Query: 4    LFAHGIASSDLLFDKFTYIYVLGACARSLFQVTLLKGKQLHSRILKTGFASDVVVQTTGI 183
            +FA  ++   L+FD FTYI+ LGACARS    +L +G+Q+H+RILK G  S+V+VQTT I
Sbjct: 92   VFADWVSREALVFDDFTYIFALGACARS---PSLWEGRQIHARILKQGVWSNVLVQTTAI 148

Query: 184  HFYASHGDCCSARKVFDEMPNRTSATWNAMISGYCSQKERVVYHAHEALMLFSELLRDNY 363
            HFYA++ D   AR VFDEM  R+S TWNAMI+GYCSQ+ +VV +A +AL+LF  +L D  
Sbjct: 149  HFYANNNDVALARLVFDEMRKRSSVTWNAMITGYCSQRGKVVCYARDALVLFRAMLVDAC 208

Query: 364  AAKPTETTMVCVLSACSRIGDLLTGSCVHGRIEKTVYMPHVDVYIGTCLVDMYSKCGCLS 543
              KPT+TTMVCVLSA S++G L TG  VHG IEKTV  P  DV++GT LVDMYSKCGCL 
Sbjct: 209  GVKPTDTTMVCVLSAASQLGVLETGVGVHGYIEKTVLAPANDVFVGTGLVDMYSKCGCLG 268

Query: 544  NALSVFNRMKVKNILTWTSMMTGLALHGQGKEALEILDAMQATNIRPNAVTFTSLLFACC 723
            +AL +F  MK +N+LTWT+M+TGLA HG+GKEALE+LD M A  ++PNAVTFTSL  ACC
Sbjct: 269  SALCIFWGMKERNVLTWTAMITGLARHGRGKEALELLDEMVAYGVKPNAVTFTSLFSACC 328

Query: 724  HAGLVEEGLILFCSMSSKFDVTPHIQHYGCIVDLLGRAGQLEEAYNFITEMPLQPDAILW 903
            HAGLVEEGL LF SM SKF VTP IQHYGCIVDLLGRAG L+EAY+F+  MP++PDAILW
Sbjct: 329  HAGLVEEGLQLFHSMRSKFGVTPGIQHYGCIVDLLGRAGHLKEAYDFVRGMPVEPDAILW 388

Query: 904  RSLLGACKIHADGVMGEKVGKHLLLMQQEKG---MIKSGEDFIALSNVYASAERWDELET 1074
            RSLL ACK+H D VMGE+VGK LL +Q ++    ++ + EDFIALSNVYASAERW+++ET
Sbjct: 389  RSLLSACKVHRDVVMGEEVGKLLLQLQPQQSFADLVAASEDFIALSNVYASAERWEDVET 448

Query: 1075 VREMIKFKRMQITPGCSSVQ 1134
            VRE +K K ++  PGCSSVQ
Sbjct: 449  VREAMKVKGIETKPGCSSVQ 468


>ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970-like
            [Glycine max]
          Length = 477

 Score =  440 bits (1132), Expect = e-121
 Identities = 226/378 (59%), Positives = 278/378 (73%), Gaps = 1/378 (0%)
 Frame = +1

Query: 4    LFAHGIASSDLLFDKFTYIYVLGACARSLFQVTLLKGKQLHSRILKTGFASDVVVQTTGI 183
            +F +  +   + FD++TY +VLGACARS    TL  G+QLH+RI+K GF S+++V TT I
Sbjct: 91   IFQNEFSRGLMYFDEYTYNFVLGACARSPSASTLWVGRQLHARIVKHGFESNILVPTTKI 150

Query: 184  HFYASHGDCCSARKVFDEMPNRTSATWNAMISGYCSQKERVVYHAHEALMLFSELLRDNY 363
            +FYAS+ D  SAR+VFDEMP R++ TWNAMI+GY SQKE    +A  AL LF ++L D  
Sbjct: 151  YFYASNKDIISARRVFDEMPRRSTVTWNAMITGYSSQKEGNKKYALNALSLFIDMLVDVS 210

Query: 364  AAKPTETTMVCVLSACSRIGDLLTGSCVHGRIEKTVYMPHVDVYIGTCLVDMYSKCGCLS 543
              KPT TT+V VLSA S+IG L TG+C+HG  EKTV  P  DV+IGT LVDMYSKCGCL 
Sbjct: 211  VIKPTGTTIVSVLSAVSQIGMLETGACIHGFAEKTVCTPEDDVFIGTGLVDMYSKCGCLD 270

Query: 544  NALSVFNRMKVKNILTWTSMMTGLALHGQGKEALEILDAMQATNIRPNAVTFTSLLFACC 723
            +ALSVF RM  KNILTWT+M T LA+HG+GK+ALE+L  M A  ++PN  TFTS L ACC
Sbjct: 271  SALSVFWRMNQKNILTWTAMTTSLAIHGKGKQALEVLYKMGAYGVKPNEATFTSFLSACC 330

Query: 724  HAGLVEEGLILFCSMSSKFDVTPHIQHYGCIVDLLGRAGQLEEAYNFITEMPLQPDAILW 903
            H GLVEEGLILF  M   F + P I+HYGCIVDLLGRAG LEEAY+FI  MP+ PDA++W
Sbjct: 331  HGGLVEEGLILFHEMKRTFGMMPQIKHYGCIVDLLGRAGNLEEAYDFIMRMPINPDAVIW 390

Query: 904  RSLLGACKIHADGVMGEKVGKHLLLMQQ-EKGMIKSGEDFIALSNVYASAERWDELETVR 1080
            RSLLGACKIH D VMGEKVGK LL +++         ED+IALSNVYA AE+WD++E VR
Sbjct: 391  RSLLGACKIHGDVVMGEKVGKFLLQLEEWSSAESPKSEDYIALSNVYALAEKWDDVEIVR 450

Query: 1081 EMIKFKRMQITPGCSSVQ 1134
            + +K K +    G S+VQ
Sbjct: 451  KTMKSKGILSKAGSSAVQ 468


>ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970-like
            [Glycine max]
          Length = 595

 Score =  432 bits (1112), Expect = e-119
 Identities = 222/378 (58%), Positives = 275/378 (72%), Gaps = 1/378 (0%)
 Frame = +1

Query: 4    LFAHGIASSDLLFDKFTYIYVLGACARSLFQVTLLKGKQLHSRILKTGFASDVVVQTTGI 183
            +F +  +   + FD++TY +VLGACARS    TL  G+QLH+ I+K G  S++VV TT +
Sbjct: 211  IFRNEFSRGLMFFDEYTYNFVLGACARSPSASTLWVGRQLHALIVKHGVESNIVVPTTKV 270

Query: 184  HFYASHGDCCSARKVFDEMPNRTSATWNAMISGYCSQKERVVYHAHEALMLFSELLRDNY 363
            +FYAS+ D  S+RKVFDEMP R++ TWNAMI+GY S KE    +A  AL LF ++L D  
Sbjct: 271  YFYASNKDIISSRKVFDEMPRRSTVTWNAMITGYSSLKEGNKKYALNALYLFIDMLIDVS 330

Query: 364  AAKPTETTMVCVLSACSRIGDLLTGSCVHGRIEKTVYMPHVDVYIGTCLVDMYSKCGCLS 543
              KPT TT+V VLSA S+IG L TG+C+HG  EKTV  P  DV+IGT LVDMYSKCGCL 
Sbjct: 331  GIKPTATTIVSVLSAVSQIGMLETGACIHGFAEKTVCTPEDDVFIGTGLVDMYSKCGCLD 390

Query: 544  NALSVFNRMKVKNILTWTSMMTGLALHGQGKEALEILDAMQATNIRPNAVTFTSLLFACC 723
            +ALSVF RM  KNI+TWT+M TGLA+HG+GK++LE+L  M A  ++PN  TFTS L ACC
Sbjct: 391  SALSVFWRMNQKNIMTWTAMTTGLAIHGKGKQSLEVLYKMGAYGVKPNEATFTSFLSACC 450

Query: 724  HAGLVEEGLILFCSMSSKFDVTPHIQHYGCIVDLLGRAGQLEEAYNFITEMPLQPDAILW 903
            H GLVEEGL LF  M   F V P IQHYGCIVDLLGRAG+LEEAY+FI +MP+ PDA++W
Sbjct: 451  HGGLVEEGLQLFLEMKRTFGVMPQIQHYGCIVDLLGRAGKLEEAYDFIMQMPINPDAVIW 510

Query: 904  RSLLGACKIHADGVMGEKVGKHLLLMQQ-EKGMIKSGEDFIALSNVYASAERWDELETVR 1080
            RSLL AC IH D VMGEKVGK LL +++         ED+IALSNVYA AE+WD++ETVR
Sbjct: 511  RSLLAACNIHGDVVMGEKVGKFLLQLEEWSSAESPKSEDYIALSNVYALAEKWDDVETVR 570

Query: 1081 EMIKFKRMQITPGCSSVQ 1134
              +K K +    G S+VQ
Sbjct: 571  IKMKAKSILNKAGSSAVQ 588


>ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis thaliana]
            gi|75273478|sp|Q9LJ69.1|PP243_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g18970 gi|9280314|dbj|BAB01693.1| unnamed protein
            product [Arabidopsis thaliana]
            gi|134031924|gb|ABO45699.1| At3g18970 [Arabidopsis
            thaliana] gi|332642654|gb|AEE76175.1| mitochondrial
            editing factor 20 [Arabidopsis thaliana]
          Length = 472

 Score =  392 bits (1006), Expect = e-106
 Identities = 203/381 (53%), Positives = 270/381 (70%), Gaps = 4/381 (1%)
 Frame = +1

Query: 1    QLFAHGIASSDLLF-DKFTYIYVLGACARSLFQVTLLKGKQLHSRILKTGFASDV-VVQT 174
            ++FA+  + S LL+ ++ T+++VLGACARS     L  G+ +H  + K GF  +  ++ T
Sbjct: 92   RIFANYASKSSLLYLNERTFVFVLGACARSASSSALRVGRIVHGMVKKLGFLYESELIGT 151

Query: 175  TGIHFYASHGDCCSARKVFDEMPNRTSATWNAMISGYCSQKERVVYHAHEALMLFSELLR 354
            T +HFYA +GD   ARKVFDEMP RTS TWNAMI GYCS K++  ++A +A++LF     
Sbjct: 152  TLLHFYAKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRRFSC 211

Query: 355  DNYAAKPTETTMVCVLSACSRIGDLLTGSCVHGRIEKTVYMPHVDVYIGTCLVDMYSKCG 534
                 +PT+TTMVCVLSA S+ G L  GS VHG IEK  + P VDV+IGT LVDMYSKCG
Sbjct: 212  CGSGVRPTDTTMVCVLSAISQTGLLEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKCG 271

Query: 535  CLSNALSVFNRMKVKNILTWTSMMTGLALHGQGKEALEILDAMQATNIRPNAVTFTSLLF 714
            CL+NA SVF  MKVKN+ TWTSM TGLAL+G+G E   +L+ M  + I+PN +TFTSLL 
Sbjct: 272  CLNNAFSVFELMKVKNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLS 331

Query: 715  ACCHAGLVEEGLILFCSMSSKFDVTPHIQHYGCIVDLLGRAGQLEEAYNFITEMPLQPDA 894
            A  H GLVEEG+ LF SM ++F VTP I+HYGCIVDLLG+AG+++EAY FI  MP++PDA
Sbjct: 332  AYRHIGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMPIKPDA 391

Query: 895  ILWRSLLGACKIHADGVMGEKVGKHLLLMQQEKGMIKSG--EDFIALSNVYASAERWDEL 1068
            IL RSL  AC I+ + VMGE++GK LL +++E   +     ED++ALSNV A   +W E+
Sbjct: 392  ILLRSLCNACSIYGETVMGEEIGKALLEIEREDEKLSGSECEDYVALSNVLAHKGKWVEV 451

Query: 1069 ETVREMIKFKRMQITPGCSSV 1131
            E +R+ +K +R++  PG S V
Sbjct: 452  EKLRKEMKERRIKTRPGYSFV 472


>ref|XP_002885286.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297331126|gb|EFH61545.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 471

 Score =  382 bits (980), Expect = e-103
 Identities = 196/381 (51%), Positives = 265/381 (69%), Gaps = 4/381 (1%)
 Frame = +1

Query: 1    QLFAHGIASSDLLF-DKFTYIYVLGACARSLFQVTLLKGKQLHSRILKTGFASDV-VVQT 174
            ++F +  + S LL+ ++ T+++VLGACARS     L  G+ +H  + K GF  +  ++ T
Sbjct: 91   RIFTNWASKSSLLYLNERTFVFVLGACARSASSSALRVGRIVHGMVKKLGFLYESELIGT 150

Query: 175  TGIHFYASHGDCCSARKVFDEMPNRTSATWNAMISGYCSQKERVVYHAHEALMLFSELLR 354
            T +H YA +GD   ARKVFDEMP RTS TWNAMI GYCS K++  ++A +A++LF     
Sbjct: 151  TLLHCYAKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMILFRRFSC 210

Query: 355  DNYAAKPTETTMVCVLSACSRIGDLLTGSCVHGRIEKTVYMPHVDVYIGTCLVDMYSKCG 534
                 +PT+TTMVCVL A S+ G +  GS VHG IEK  + P +DV+IGT LVDMYSKCG
Sbjct: 211  CGSGVRPTDTTMVCVLPAISQTGLIEIGSLVHGYIEKLGFTPEIDVFIGTGLVDMYSKCG 270

Query: 535  CLSNALSVFNRMKVKNILTWTSMMTGLALHGQGKEALEILDAMQATNIRPNAVTFTSLLF 714
            CL++A SVF  MKVKN+ TWTSM TGLALHG+G E   +LD M  + I+PN VTFTSLL 
Sbjct: 271  CLNSAFSVFELMKVKNVFTWTSMATGLALHGRGNETPNLLDRMAESGIKPNEVTFTSLLS 330

Query: 715  ACCHAGLVEEGLILFCSMSSKFDVTPHIQHYGCIVDLLGRAGQLEEAYNFITEMPLQPDA 894
            A  H GLV+EG+ LF SM ++F VTP IQHYGCIVDLLG+AG+++EAY F+  MP++PD 
Sbjct: 331  AYRHIGLVQEGIELFKSMRTRFGVTPVIQHYGCIVDLLGKAGRIQEAYEFVLAMPIKPDT 390

Query: 895  ILWRSLLGACKIHADGVMGEKVGKHLLLMQQEKGMIKSG--EDFIALSNVYASAERWDEL 1068
            IL RSL  AC I+ +  MGE++GK LL +++E+  +     ED++ALSN+ A   +W E+
Sbjct: 391  ILLRSLCNACSIYGETAMGEEIGKALLEIEREEEKLSGSECEDYVALSNMLAHKGKWIEV 450

Query: 1069 ETVREMIKFKRMQITPGCSSV 1131
            E +R  +K +R++  PG S V
Sbjct: 451  EKLRNEMKERRIKTRPGFSFV 471