BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00030583
         (492 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN73672.1| hypothetical protein VITISV_031859 [Vitis vinifera]   221   5e-56
ref|XP_002327644.1| predicted protein [Populus trichocarpa] gi|2...   211   4e-53
ref|XP_003516541.1| PREDICTED: pentatricopeptide repeat-containi...   208   4e-52
ref|XP_003612228.1| Pentatricopeptide repeat-containing protein ...   206   1e-51
ref|XP_003538888.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   205   4e-51

>emb|CAN73672.1| hypothetical protein VITISV_031859 [Vitis vinifera]
          Length = 901

 Score =  221 bits (563), Expect = 5e-56
 Identities = 104/162 (64%), Positives = 128/162 (79%)
 Frame = -3

Query: 490  MPQRDVISWNSIIQGYIKLGEVGAAHSIFDKMPSKNSISWNIMISGYLKKSRNPGCGLKL 311
            M +RD++SWNSII  Y KLG +  AH +FD MP +N++SWNIM+ GYLK   NPGC LKL
Sbjct: 531  MSKRDLVSWNSIIDAYAKLGHLVLAHRLFDAMPERNAVSWNIMMGGYLKGG-NPGCALKL 589

Query: 310  FREMMETGFKGTDRTFVAVLTACGRSARLKEGRSVHGLLIKNLVKSSLMLDTALIDMYSK 131
            FREM   G +G + T V+VLTAC RSARLKEGRS+HG+LI+  +KSSL+LDTALIDMYSK
Sbjct: 590  FREMANAGLRGGETTMVSVLTACCRSARLKEGRSIHGVLIRTFLKSSLILDTALIDMYSK 649

Query: 130  CQRLEAARRVFDHMLVRNLVCWNAMILGYCIRGCPEDGIRLF 5
            C+R++ AR V+D M   NLVCWNAMILG+CI G  EDG++LF
Sbjct: 650  CERVDVARVVYDRMTKXNLVCWNAMILGHCIHGNAEDGLKLF 691



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 38/126 (30%), Positives = 60/126 (47%)
 Frame = -3

Query: 409 IFDKMPSKNSISWNIMISGYLKKSRNPGCGLKLFREMMETGFKGTDRTFVAVLTACGRSA 230
           IF  + S +++  N +I  Y   S      L  + E +  GF     TF  + + C +  
Sbjct: 426 IFRSIDSPDTVCVNAVIKAY-SISSVAHQALVFYFETLRNGFMCNSFTFPPLFSCCRKXG 484

Query: 229 RLKEGRSVHGLLIKNLVKSSLMLDTALIDMYSKCQRLEAARRVFDHMLVRNLVCWNAMIL 50
            ++ G   HG  IKN V + L +  +++ MY  C  +E A +VF  M  R+LV WN++I 
Sbjct: 485 CVEYGEKFHGQAIKNGVDNVLDVQNSMVHMYGCCGVVEXAEKVFGEMSKRDLVSWNSIID 544

Query: 49  GYCIRG 32
            Y   G
Sbjct: 545 AYAKLG 550


>ref|XP_002327644.1| predicted protein [Populus trichocarpa] gi|222836729|gb|EEE75122.1|
           predicted protein [Populus trichocarpa]
          Length = 564

 Score =  211 bits (538), Expect = 4e-53
 Identities = 95/162 (58%), Positives = 125/162 (77%)
 Frame = -3

Query: 490 MPQRDVISWNSIIQGYIKLGEVGAAHSIFDKMPSKNSISWNIMISGYLKKSRNPGCGLKL 311
           M  RD++SWNSII GY  LGE+G AH +F+ MP +N +SWNI+ISGYLK   NPGC L L
Sbjct: 208 MSHRDLVSWNSIIDGYATLGELGIAHGLFEVMPERNVVSWNILISGYLK-GNNPGCVLML 266

Query: 310 FREMMETGFKGTDRTFVAVLTACGRSARLKEGRSVHGLLIKNLVKSSLMLDTALIDMYSK 131
           FR+MM  G +G D T V+VL+ACGRSARL+EGRSVHG ++K     +++ +T LIDMY++
Sbjct: 267 FRKMMNDGMRGNDSTIVSVLSACGRSARLREGRSVHGFIVKKFSSMNVIHETTLIDMYNR 326

Query: 130 CQRLEAARRVFDHMLVRNLVCWNAMILGYCIRGCPEDGIRLF 5
           C ++E ARR+FD ++ RNL CWNAMILG+C+ G P+DG+ LF
Sbjct: 327 CHKVEMARRIFDKVVRRNLGCWNAMILGHCLHGNPDDGLELF 368



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 43/142 (30%), Positives = 71/142 (50%)
 Frame = -3

Query: 457 IIQGYIKLGEVGAAHSIFDKMPSKNSISWNIMISGYLKKSRNPGCGLKLFREMMETGFKG 278
           +++ +   G++     IF  + S  +   N ++  Y   S  P   L  + EM+++GF  
Sbjct: 87  LLKHFADFGDIDYTIFIFKFIASPGTFVVNNVVKAY-SLSSEPNKALVFYFEMLKSGFCP 145

Query: 277 TDRTFVAVLTACGRSARLKEGRSVHGLLIKNLVKSSLMLDTALIDMYSKCQRLEAARRVF 98
              TFV++   C +    K G+  HG  +KN V   L ++ +LI  Y  C  +  A++VF
Sbjct: 146 NSYTFVSLFGCCAKVGCAKLGKKYHGQAVKNGVDRILPVENSLIHCYGCCGDMGLAKKVF 205

Query: 97  DHMLVRNLVCWNAMILGYCIRG 32
           D M  R+LV WN++I GY   G
Sbjct: 206 DEMSHRDLVSWNSIIDGYATLG 227



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
 Frame = -3

Query: 478 DVISWNSIIQGYIKLGEVGAAHSIFDKMPSKNSISWNIMISGYLKKSRNPGCGLKLFREM 299
           +VI   ++I  Y +  +V  A  IFDK+  +N   WN MI G+     NP  GL+LF++M
Sbjct: 313 NVIHETTLIDMYNRCHKVEMARRIFDKVVRRNLGCWNAMILGHCLHG-NPDDGLELFKDM 371

Query: 298 METGFKGT-------DRTFVAVLTACGRSARLKEGRSVHGLLIKN 185
           ++    G        + TF+ VL AC R+  L EG++    +I N
Sbjct: 372 VDRAGLGKRDSVHPDEVTFIGVLCACARAGLLTEGKNFFSQMIYN 416


>ref|XP_003516541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g51320-like [Glycine max]
          Length = 579

 Score =  208 bits (529), Expect = 4e-52
 Identities = 98/162 (60%), Positives = 125/162 (77%)
 Frame = -3

Query: 490 MPQRDVISWNSIIQGYIKLGEVGAAHSIFDKMPSKNSISWNIMISGYLKKSRNPGCGLKL 311
           M  RD++SWNSII G++ +GE+ AAH +FDKMP +N ++WN+MISGYLK  RNPG  +KL
Sbjct: 200 MLSRDLVSWNSIINGHMMVGELNAAHRLFDKMPERNLVTWNVMISGYLK-GRNPGYAMKL 258

Query: 310 FREMMETGFKGTDRTFVAVLTACGRSARLKEGRSVHGLLIKNLVKSSLMLDTALIDMYSK 131
           FREM   G +G  RT V V TACGRS RLKE +SVHG +++  ++SSL+LDTALI MY K
Sbjct: 259 FREMGRLGLRGNARTMVCVATACGRSGRLKEAKSVHGSIVRMSLRSSLILDTALIGMYCK 318

Query: 130 CQRLEAARRVFDHMLVRNLVCWNAMILGYCIRGCPEDGIRLF 5
           C+++E A+ VF+ M  RNLV WN MILG+CIRG PEDG+ LF
Sbjct: 319 CRKVEVAQIVFERMRERNLVSWNMMILGHCIRGSPEDGLDLF 360



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 47/144 (32%), Positives = 70/144 (48%)
 Frame = -3

Query: 436 LGEVGAAHSIFDKMPSKNSISWNIMISGYLKKSRNPGCGLKLFREMMETGFKGTDRTFVA 257
           L +V     IF  + S ++   NI+I  Y          +  FR +M  GF     TFV 
Sbjct: 86  LCDVAYTRVIFRSINSLDTFCVNIVIQAYSNSHAPREAIVFYFRSLMR-GFFPNSYTFVP 144

Query: 256 VLTACGRSARLKEGRSVHGLLIKNLVKSSLMLDTALIDMYSKCQRLEAARRVFDHMLVRN 77
           ++ +C +   +  G+  H    KN V S L +  +LI MY  C  ++ AR +FD ML R+
Sbjct: 145 LVASCAKMGCIGSGKECHAQATKNGVDSVLPVQNSLIHMYVCCGGVQLARVLFDGMLSRD 204

Query: 76  LVCWNAMILGYCIRGCPEDGIRLF 5
           LV WN++I G+ + G      RLF
Sbjct: 205 LVSWNSIINGHMMVGELNAAHRLF 228


>ref|XP_003612228.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513563|gb|AES95186.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 665

 Score =  206 bits (525), Expect = 1e-51
 Identities = 98/162 (60%), Positives = 123/162 (75%)
 Frame = -3

Query: 490 MPQRDVISWNSIIQGYIKLGEVGAAHSIFDKMPSKNSISWNIMISGYLKKSRNPGCGLKL 311
           M  RD++SWNS+I GY+K+G++ AAH +FD MP +N ++WN +ISGY  K RNPG  LKL
Sbjct: 198 MVSRDLVSWNSMIDGYVKVGDLSAAHKLFDVMPERNLVTWNCLISGY-SKGRNPGYALKL 256

Query: 310 FREMMETGFKGTDRTFVAVLTACGRSARLKEGRSVHGLLIKNLVKSSLMLDTALIDMYSK 131
           FREM     +   RT V  +TACGRS RLKEG+SVHG +I+  ++SSL+LDTALIDMY K
Sbjct: 257 FREMGRLRIRENARTMVCAVTACGRSGRLKEGKSVHGSMIRLFMRSSLILDTALIDMYCK 316

Query: 130 CQRLEAARRVFDHMLVRNLVCWNAMILGYCIRGCPEDGIRLF 5
           C R+EAA +VF+ M  RNLV WNAMILG+CI G PEDG+ LF
Sbjct: 317 CGRVEAASKVFERMSSRNLVSWNAMILGHCIHGNPEDGLSLF 358



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 38/109 (34%), Positives = 61/109 (55%)
 Frame = -3

Query: 370 NIMISGYLKKSRNPGCGLKLFREMMETGFKGTDRTFVAVLTACGRSARLKEGRSVHGLLI 191
           N +I+ Y   S  P   +  +   ++ GF     TFV++++AC + + +  G+  HG  +
Sbjct: 106 NTVINSYCN-SYVPHKAIVFYFSSLKIGFFANSYTFVSLISACSKMSCVDNGKMCHGQAV 164

Query: 190 KNLVKSSLMLDTALIDMYSKCQRLEAARRVFDHMLVRNLVCWNAMILGY 44
           KN V   L ++ +L  MY  C  +E AR +FD M+ R+LV WN+MI GY
Sbjct: 165 KNGVDFVLPVENSLAHMYGSCGYVEVARVMFDGMVSRDLVSWNSMIDGY 213



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 30/170 (17%)
 Frame = -3

Query: 460 SIIQGYIKLGEVGAAHSIFDKMPSKNSISWNIMISGYLKKSRNPGCGLKLFREMM----- 296
           ++I  Y K G V AA  +F++M S+N +SWN MI G+     NP  GL LF  M+     
Sbjct: 309 ALIDMYCKCGRVEAASKVFERMSSRNLVSWNAMILGHCIHG-NPEDGLSLFDLMVGMERV 367

Query: 295 ---------ETGFKGTDR------TFVAVLTACGRSARLKEGRSVHGLLIKNL------- 182
                     +  +G  R      TF+ +L AC R+  L EGRS    +I          
Sbjct: 368 KGEVEVDESSSADRGLVRLLPDEITFIGILCACARAELLSEGRSYFKQMIDVFGLKPNFA 427

Query: 181 ---VKSSLMLDTALIDMYSKCQRLEAARRVFDHMLVRNLVCWNAMILGYC 41
                ++L+ +  LID   +C +  A    FD  +    + W A +LG C
Sbjct: 428 HFWCMANLLANVGLIDEAEECLKNMAK---FDGYISHESLLW-ASLLGLC 473


>ref|XP_003538888.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g51320-like [Glycine max]
          Length = 560

 Score =  205 bits (521), Expect = 4e-51
 Identities = 99/162 (61%), Positives = 126/162 (77%)
 Frame = -3

Query: 490 MPQRDVISWNSIIQGYIKLGEVGAAHSIFDKMPSKNSISWNIMISGYLKKSRNPGCGLKL 311
           M  RD++S NSII G + +GE+ AAH + ++MP +N ++WN+MISGYLK  RNPG  +KL
Sbjct: 217 MLSRDLVSRNSIIDGIMMVGELNAAHRLLNEMPDRNLVTWNVMISGYLK-GRNPGYAMKL 275

Query: 310 FREMMETGFKGTDRTFVAVLTACGRSARLKEGRSVHGLLIKNLVKSSLMLDTALIDMYSK 131
           FREM   G +G  RT V V TACGRS RLKEG+SV+G +++ LV+SSL+LDT LIDMY K
Sbjct: 276 FREMGRLGLRGDARTMVCVATACGRSGRLKEGKSVYGSIVRMLVRSSLILDTVLIDMYCK 335

Query: 130 CQRLEAARRVFDHMLVRNLVCWNAMILGYCIRGCPEDGIRLF 5
           C+++E ARRVF+ M  RNLV WNAMILG+CIRG PEDG+ LF
Sbjct: 336 CRKVEDARRVFERMGERNLVSWNAMILGHCIRGSPEDGLGLF 377



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 40/126 (31%), Positives = 61/126 (48%)
 Frame = -3

Query: 409 IFDKMPSKNSISWNIMISGYLKKSRNPGCGLKLFREMMETGFKGTDRTFVAVLTACGRSA 230
           IF  + S  +   N +I  Y          +  FR +M  GF     TFV ++ +C +  
Sbjct: 112 IFRTINSLGTFCVNTVIKSYCNSHAPREAIVFYFRSLM-CGFFPNSYTFVPLVASCAKMG 170

Query: 229 RLKEGRSVHGLLIKNLVKSSLMLDTALIDMYSKCQRLEAARRVFDHMLVRNLVCWNAMIL 50
            +  G+  H    KN V S L +  +LI MY+ C  ++ AR +FD ML R+LV  N++I 
Sbjct: 171 CIDSGKECHAQATKNGVDSVLPVQNSLIHMYACCGDVQLARVLFDGMLSRDLVSRNSIID 230

Query: 49  GYCIRG 32
           G  + G
Sbjct: 231 GIMMVG 236



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 32/83 (38%), Positives = 46/83 (55%)
 Frame = -3

Query: 457 IIQGYIKLGEVGAAHSIFDKMPSKNSISWNIMISGYLKKSRNPGCGLKLFREMMETGFKG 278
           +I  Y K  +V  A  +F++M  +N +SWN MI G+  +  +P  GL LF  M+ +    
Sbjct: 329 LIDMYCKCRKVEDARRVFERMGERNLVSWNAMILGHCIRG-SPEDGLGLFDVMIGSKVAP 387

Query: 277 TDRTFVAVLTACGRSARLKEGRS 209
              TF+ VL AC R+  L EGRS
Sbjct: 388 XXSTFIGVLCACARAEMLAEGRS 410