BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00028995
         (693 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002534209.1| pentatricopeptide repeat-containing protein,...   208   9e-52
ref|XP_002515739.1| pentatricopeptide repeat-containing protein,...   198   1e-48
ref|XP_002879120.1| pentatricopeptide repeat-containing protein ...   194   1e-47
ref|NP_180372.1| pentatricopeptide repeat-containing protein [Ar...   192   4e-47
ref|XP_002335015.1| predicted protein [Populus trichocarpa] gi|2...   191   1e-46

>ref|XP_002534209.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525704|gb|EEF28173.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 491

 Score =  208 bits (529), Expect = 9e-52
 Identities = 105/230 (45%), Positives = 164/230 (71%), Gaps = 2/230 (0%)
 Frame = -3

Query: 685 SKSLLQPTS-LFSNLNSEIIRTVLSNPRIKIQTCLDFFNFLNRTKTTSSNKLDIQTHLTL 509
           SK+L+ P+S + S+LN   ++ +LSNP      CL FFNF+ + ++  S + D+Q +LTL
Sbjct: 30  SKTLISPSSTVLSDLNPTKLQQILSNPLHNPLKCLCFFNFIVKNQSLISFEPDLQAYLTL 89

Query: 508 ICRILKGRKFILAKDLLSFVAIDEILHYPISDTASFVTDCC-EDAWVSTKLFDMLFRVYS 332
           I R+L+ RKF  A++LL  V+I++   YP    AS +  CC  +  V  KLF+++ +VYS
Sbjct: 90  ISRLLEARKFSDAENLLKSVSIEDYHRYPFPLLASTIEHCCCLEPKVIAKLFNLMLKVYS 149

Query: 331 DSKRFAKALEVFEYMKNNGIELDERSCIVYLVAVMKFNQVDLALDFFRRMLESGVAVSVY 152
           D+K+F + +E F++MKNNGIE+DER+C ++L+A+ + NQ+  +L+FF  M++SGV VSVY
Sbjct: 150 DNKKFGQVIETFDHMKNNGIEIDERTCTMHLLALKRKNQIRSSLEFFNLMIKSGVEVSVY 209

Query: 151 SMTIVVGLLCKSGDTKKARNLIEEMGGRGIKPNIITYNSIIDACIRRGDF 2
           S+TIVV +LC++G+ K+ R L+++M   G KPNI+TYN +I+AC RR +F
Sbjct: 210 SLTIVVDVLCETGEIKRCRELVQKMVTSGTKPNIVTYNVMINACARRWNF 259


>ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545176|gb|EEF46686.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 613

 Score =  198 bits (503), Expect = 1e-48
 Identities = 99/230 (43%), Positives = 158/230 (68%)
 Frame = -3

Query: 691 SGSKSLLQPTSLFSNLNSEIIRTVLSNPRIKIQTCLDFFNFLNRTKTTSSNKLDIQTHLT 512
           SG K L   +SL SNL+S     VLSNP +  ++CL+FF  L + ++   +K D++ H+ 
Sbjct: 37  SGLKPLETKSSLLSNLDSYTTNLVLSNPNLPTRSCLNFFKCLQKNQSLICHKPDLRAHVI 96

Query: 511 LICRILKGRKFILAKDLLSFVAIDEILHYPISDTASFVTDCCEDAWVSTKLFDMLFRVYS 332
           LI R+ K RKF++ K++L+  A+D+ L   +SD  S + +   +     KL DMLFRVY 
Sbjct: 97  LISRLFKARKFVVMKNVLTCYAMDKNLRCSVSDFVSLIDNRFHEPKFVEKLCDMLFRVYV 156

Query: 331 DSKRFAKALEVFEYMKNNGIELDERSCIVYLVAVMKFNQVDLALDFFRRMLESGVAVSVY 152
           D+  F +  +VF+YM +NG+++D+RSCIV L+A+ + +Q+ ++L FF++M+E  V V+VY
Sbjct: 157 DNSMFEEGFKVFDYMVHNGLKIDDRSCIVCLLALKRSDQMVMSLGFFKKMVEFKVDVTVY 216

Query: 151 SMTIVVGLLCKSGDTKKARNLIEEMGGRGIKPNIITYNSIIDACIRRGDF 2
           SMTIV+  LCK G  ++A++L+ EM G+GIKPN++TYN++++A I+  DF
Sbjct: 217 SMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDF 266



 Score = 63.9 bits (154), Expect = 3e-08
 Identities = 34/118 (28%), Positives = 62/118 (52%)
 Frame = -3

Query: 361 LFDMLFRVYSDSKRFAKALEVFEYMKNNGIELDERSCIVYLVAVMKFNQVDLALDFFRRM 182
           +F+ L   Y       +AL + + M+  G E D  +       + K N+ + A  +   M
Sbjct: 392 IFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTM 451

Query: 181 LESGVAVSVYSMTIVVGLLCKSGDTKKARNLIEEMGGRGIKPNIITYNSIIDACIRRG 8
           +E GV  +  S TI++ + CK G+  +A  + ++M  +G KPN++TYN++ID   ++G
Sbjct: 452 VEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKG 509



 Score = 56.6 bits (135), Expect = 5e-06
 Identities = 37/177 (20%), Positives = 77/177 (43%)
 Frame = -3

Query: 538 KLDIQTHLTLICRILKGRKFILAKDLLSFVAIDEILHYPISDTASFVTDCCEDAWVSTKL 359
           K ++ T+ TL+   +K   F    ++L  + +D++++                   +   
Sbjct: 247 KPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVY-------------------NAAT 287

Query: 358 FDMLFRVYSDSKRFAKALEVFEYMKNNGIELDERSCIVYLVAVMKFNQVDLALDFFRRML 179
           + +L   Y  S + A+A +VFE M   G+E D       +    K   +  A   F  + 
Sbjct: 288 YTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELN 347

Query: 178 ESGVAVSVYSMTIVVGLLCKSGDTKKARNLIEEMGGRGIKPNIITYNSIIDACIRRG 8
           E G+  + ++   ++   C SG    A  L+ EM  +G+  N++ +N++I+   ++G
Sbjct: 348 ERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKG 404


>ref|XP_002879120.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297324959|gb|EFH55379.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 483

 Score =  194 bits (494), Expect = 1e-47
 Identities = 101/220 (45%), Positives = 151/220 (68%), Gaps = 3/220 (1%)
 Frame = -3

Query: 652 SNLNSEIIRTVLSNPRIKIQTCLDFFNFLNRTKTTSSNKLDIQTHLTLICRILKGRKFIL 473
           S+LN    R +LS+P IK   C+  FNF+    +  S + D++THL+L  R+L  R+F  
Sbjct: 43  SDLNLSTFRRILSDPDIKSWKCISLFNFILENPSLFSFQPDLRTHLSLTSRVLSERRFSD 102

Query: 472 AKDLLSFVAIDEILHYPISD-TASFVTDCCEDAWVSTKLFDMLFRVYSDSKRFAKALEVF 296
           AK+LL  VAID+IL YP     +SFV +C  +  V  + F+ +  VYSD+ +F + +EVF
Sbjct: 103 AKELLKLVAIDDILRYPFKVIVSSFVDECGCETRVVARFFNSMLMVYSDNGKFDEVVEVF 162

Query: 295 EYMKNNGIELDERSCIVYLVAVMKFNQVDLALDFFRRMLESGV-AVSVYSMTIVVGLLCK 119
           EYMKNN +++DE++C ++L+ + K +Q++LA DFFR M+ESG+  VSVYS+T+VV  LC 
Sbjct: 163 EYMKNNEVKIDEKACTLHLLNLKKCDQMELARDFFRLMVESGLDVVSVYSLTVVVTALCC 222

Query: 118 SGDTKKARNLIEEMG-GRGIKPNIITYNSIIDACIRRGDF 2
           +G+  + R L+EEM   +GIKPNI+T+ S+ID C++R DF
Sbjct: 223 NGEITRGRELVEEMVLVKGIKPNIVTFKSMIDCCVKRWDF 262


>ref|NP_180372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75268044|sp|Q9ZUU7.1|PP174_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g28050 gi|4063753|gb|AAC98461.1| putative
           salt-inducible protein [Arabidopsis thaliana]
           gi|20197952|gb|AAM15326.1| putative salt-inducible
           protein [Arabidopsis thaliana]
           gi|330252979|gb|AEC08073.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  192 bits (489), Expect = 4e-47
 Identities = 99/231 (42%), Positives = 158/231 (68%), Gaps = 3/231 (1%)
 Frame = -3

Query: 685 SKSLLQPTSLFSNLNSEIIRTVLSNPRIKIQTCLDFFNFLNRTKTTSSNKLDIQTHLTLI 506
           +++L  P +  S+LN   +R +LS+P IK   C+  FNF+    +  S + D++THL+L 
Sbjct: 32  NQTLASPETPLSDLNLSTLRRILSDPDIKSWKCISLFNFILENPSLFSFQPDLRTHLSLT 91

Query: 505 CRILKGRKFILAKDLLSFVAIDEILHYPISDTASFVTDCCE-DAWVSTKLFDMLFRVYSD 329
            R+L  R+F  AK+LL  VAID+IL YP +   S V D C  +  V  + F+ +  VYSD
Sbjct: 92  FRVLSERRFSYAKELLKPVAIDDILRYPFNVIVSSVIDECGCEKKVVGRFFNSMIMVYSD 151

Query: 328 SKRFAKALEVFEYMKNNGIELDERSCIVYLVAVMKFNQVDLALDFFRRMLESGV-AVSVY 152
           + +F++ +EVFEYMKNN +++DE++C ++L+ + + +Q++LA DFF  M+ESG+  V+VY
Sbjct: 152 NGKFSEVVEVFEYMKNNEVKIDEKTCTLHLLNLKRCDQMELARDFFSLMVESGIDVVTVY 211

Query: 151 SMTIVVGLLCKSGDTKKARNLIEEMG-GRGIKPNIITYNSIIDACIRRGDF 2
           S+T+VV +LC +G+  +AR L+EEMG  +G+K NI+T+ S+I  C++R DF
Sbjct: 212 SLTVVVTVLCCNGEITRARELVEEMGLVKGVKANIVTFKSMIGCCVKRWDF 262


>ref|XP_002335015.1| predicted protein [Populus trichocarpa] gi|222832609|gb|EEE71086.1|
           predicted protein [Populus trichocarpa]
          Length = 302

 Score =  191 bits (485), Expect = 1e-46
 Identities = 97/224 (43%), Positives = 154/224 (68%), Gaps = 3/224 (1%)
 Frame = -3

Query: 664 TSLFSNLNSEIIRTVLSNPRIKIQTCLDFFNFLNRTKTTSSNKLDIQTHLTLICRILKGR 485
           +SL SNL+S I   V SNP + + +CL+FFNFL + ++  S+K D+Q+HL+++ R+ K R
Sbjct: 48  SSLLSNLDSHITNLVFSNPNVPLHSCLNFFNFLRKNQSFVSHKPDLQSHLSVVFRLFKAR 107

Query: 484 KFILAKDLLSFVAIDEILHYPISDTASFVTDCC---EDAWVSTKLFDMLFRVYSDSKRFA 314
           +F   K +L++VA+D  L  P+++  S V +     E  +V  KL DMLFRVY+D   F 
Sbjct: 108 RFAEMKRVLTYVAMDSNLRCPVANLVSLVEESGFNNEPNFVE-KLCDMLFRVYADCNLFE 166

Query: 313 KALEVFEYMKNNGIELDERSCIVYLVAVMKFNQVDLALDFFRRMLESGVAVSVYSMTIVV 134
           +   VF+YM +  +++D+RSCIV+L+A+ + ++++  L  F+RM+E  V V+VYS+TIV+
Sbjct: 167 EGFRVFDYMVSYELKIDDRSCIVFLLALKRCDKMEACLGLFKRMVEFNVEVTVYSLTIVI 226

Query: 133 GLLCKSGDTKKARNLIEEMGGRGIKPNIITYNSIIDACIRRGDF 2
             LCK    K+A +L+ EM  +GIKPN++TYN++I+A I+R DF
Sbjct: 227 DGLCKRRRVKRAIDLMIEMASKGIKPNVVTYNTLINAYIKRTDF 270