BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00028907
         (831 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containi...   179   7e-43
ref|NP_177262.1| pentatricopeptide repeat-containing protein [Ar...   171   2e-40
ref|XP_002888819.1| pentatricopeptide repeat-containing protein ...   170   3e-40
ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   157   2e-36
ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containi...   157   2e-36

>ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  179 bits (454), Expect = 7e-43
 Identities = 107/200 (53%), Positives = 135/200 (67%), Gaps = 14/200 (7%)
 Frame = +3

Query: 273 FLSSSTKHPK--DPILINTQVLIHGNPFWALHKFHH---NPCFLPGNGFKSFS--RLIHG 431
           FL  S K  K  +P  I+  +L+    F  L    H   N C     GF  FS  R IHG
Sbjct: 6   FLKFSPKILKTSNPFTISFHLLLADADFVRLESIKHENENSC-----GFSPFSFCRSIHG 60

Query: 432 GSVNTQS-------SHDQISEDTEKLCKILSNHTGSVSSIESSLNRSGISMVSPALVQEV 590
           GS+  Q+       ++  I++DT KLCK+L  H+ S  SIES LN + +  VSP LV EV
Sbjct: 61  GSIRNQACTETTDATNHHIAQDTGKLCKLLCTHSNS--SIESLLNGASVD-VSPTLVLEV 117

Query: 591 LKKLSNAGTLALSFFRWAEKKQGFRHTTESYNALVEALGKIKQFKMIWSLVDEMKGKSLL 770
           LKKLSN+G +ALSFFRWAEK++GF+++TE+YNAL+EALGKIKQFKMIW+LV++M+ K LL
Sbjct: 118 LKKLSNSGVIALSFFRWAEKQKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGLL 177

Query: 771 TKETFGLIIRRYARARKTKE 830
           T+ETF LI RRYARARK KE
Sbjct: 178 TQETFALISRRYARARKVKE 197


>ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g71060, mitochondrial; Flags: Precursor
           gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical
           protein; 31939-30407 [Arabidopsis thaliana]
           gi|332197036|gb|AEE35157.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  171 bits (432), Expect = 2e-40
 Identities = 85/135 (62%), Positives = 107/135 (79%)
 Frame = +3

Query: 426 HGGSVNTQSSHDQISEDTEKLCKILSNHTGSVSSIESSLNRSGISMVSPALVQEVLKKLS 605
           H  SV TQ S +  S+D E++CKIL+  T S   +E+ LN + + + SPAL++EVLKKLS
Sbjct: 49  HASSVETQVSANDASQDAERICKILTKFTDS--KVETLLNEASVKL-SPALIEEVLKKLS 105

Query: 606 NAGTLALSFFRWAEKKQGFRHTTESYNALVEALGKIKQFKMIWSLVDEMKGKSLLTKETF 785
           NAG LALS F+WAE ++GF+HTT +YNAL+E+LGKIKQFK+IWSLVD+MK K LL+KETF
Sbjct: 106 NAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETF 165

Query: 786 GLIIRRYARARKTKE 830
            LI RRYARARK KE
Sbjct: 166 ALISRRYARARKVKE 180


>ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297334660|gb|EFH65078.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 512

 Score =  170 bits (431), Expect = 3e-40
 Identities = 84/135 (62%), Positives = 108/135 (80%)
 Frame = +3

Query: 426 HGGSVNTQSSHDQISEDTEKLCKILSNHTGSVSSIESSLNRSGISMVSPALVQEVLKKLS 605
           H  SV TQ S + +S+D +K+CKILS  T S   +E+ LN + + + SPAL++EVLKKLS
Sbjct: 51  HASSVETQVSANDVSQDADKICKILSKFTDS--KVETLLNEASVKL-SPALIEEVLKKLS 107

Query: 606 NAGTLALSFFRWAEKKQGFRHTTESYNALVEALGKIKQFKMIWSLVDEMKGKSLLTKETF 785
           NAG LALS F+WAE ++GF+HTT +YNAL+E+LGKIKQFK+IW+LVD+MK K LL+K+TF
Sbjct: 108 NAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWNLVDDMKQKKLLSKDTF 167

Query: 786 GLIIRRYARARKTKE 830
            LI RRYARARK KE
Sbjct: 168 ALISRRYARARKVKE 182


>ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  157 bits (398), Expect = 2e-36
 Identities = 80/124 (64%), Positives = 101/124 (81%)
 Frame = +3

Query: 459 DQISEDTEKLCKILSNHTGSVSSIESSLNRSGISMVSPALVQEVLKKLSNAGTLALSFFR 638
           D+I++D EK CK++S +  S   IES L+ + + + SPAL+ EVLKKLSNAG LALSFFR
Sbjct: 88  DEIAQDAEKFCKLISKNPNSC--IESLLDGAPMEL-SPALIVEVLKKLSNAGFLALSFFR 144

Query: 639 WAEKKQGFRHTTESYNALVEALGKIKQFKMIWSLVDEMKGKSLLTKETFGLIIRRYARAR 818
           WAEK++GF+HTTESYN L+EALGKIKQF +IW+LV +MK K +L++ETF LI RRYARAR
Sbjct: 145 WAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRYARAR 204

Query: 819 KTKE 830
           K KE
Sbjct: 205 KVKE 208


>ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  157 bits (398), Expect = 2e-36
 Identities = 80/124 (64%), Positives = 101/124 (81%)
 Frame = +3

Query: 459 DQISEDTEKLCKILSNHTGSVSSIESSLNRSGISMVSPALVQEVLKKLSNAGTLALSFFR 638
           D+I++D EK CK++S +  S   IES L+ + + + SPAL+ EVLKKLSNAG LALSFFR
Sbjct: 88  DEIAQDAEKFCKLISKNPNSC--IESLLDGAPMEL-SPALIVEVLKKLSNAGFLALSFFR 144

Query: 639 WAEKKQGFRHTTESYNALVEALGKIKQFKMIWSLVDEMKGKSLLTKETFGLIIRRYARAR 818
           WAEK++GF+HTTESYN L+EALGKIKQF +IW+LV +MK K +L++ETF LI RRYARAR
Sbjct: 145 WAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITRRYARAR 204

Query: 819 KTKE 830
           K KE
Sbjct: 205 KVKE 208