BLASTX nr result

ID: Cimicifuga21_contig00028609 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00028609
         (233 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276236.2| PREDICTED: ABC transporter C family member 8...   131   5e-29
ref|XP_002276193.2| PREDICTED: ABC transporter C family member 8...   130   1e-28
emb|CBI35971.3| unnamed protein product [Vitis vinifera]              130   1e-28
ref|XP_002276212.2| PREDICTED: ABC transporter C family member 8...   130   1e-28
ref|XP_002327533.1| multidrug resistance protein ABC transporter...   126   2e-27

>ref|XP_002276236.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera]
          Length = 1465

 Score =  131 bits (330), Expect = 5e-29
 Identities = 60/77 (77%), Positives = 69/77 (89%)
 Frame = +3

Query: 3   RHWFFNARRSGMRMRSALMVVVYQKQLKLSSLGRR*HSTGEIVNYIVVDAYRMGECPFWF 182
           RHWF N+RRSGMRMRS+LMV VYQKQLKLSSLGR  HSTGEIVNYI +DAYRMGE P+WF
Sbjct: 341 RHWFLNSRRSGMRMRSSLMVAVYQKQLKLSSLGRGRHSTGEIVNYIAIDAYRMGEFPWWF 400

Query: 183 HSTWNYAIQLFLAIGVL 233
           H+ W++ +QLFL+IGVL
Sbjct: 401 HTMWSFILQLFLSIGVL 417


>ref|XP_002276193.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera]
          Length = 1462

 Score =  130 bits (327), Expect = 1e-28
 Identities = 61/77 (79%), Positives = 67/77 (87%)
 Frame = +3

Query: 3   RHWFFNARRSGMRMRSALMVVVYQKQLKLSSLGRR*HSTGEIVNYIVVDAYRMGECPFWF 182
           RHWF NARR GMRMRSALMV VYQKQLKLSSLGRR HS+G+IVNYI VDAY  GE P+WF
Sbjct: 341 RHWFLNARRFGMRMRSALMVAVYQKQLKLSSLGRRRHSSGQIVNYIAVDAYTTGEFPWWF 400

Query: 183 HSTWNYAIQLFLAIGVL 233
           HS W+Y +QLFL+IGVL
Sbjct: 401 HSAWSYILQLFLSIGVL 417


>emb|CBI35971.3| unnamed protein product [Vitis vinifera]
          Length = 2772

 Score =  130 bits (327), Expect = 1e-28
 Identities = 61/77 (79%), Positives = 67/77 (87%)
 Frame = +3

Query: 3   RHWFFNARRSGMRMRSALMVVVYQKQLKLSSLGRR*HSTGEIVNYIVVDAYRMGECPFWF 182
           RHWF NARR GMRMRSALMV VYQKQLKLSSLGRR HS+G+IVNYI VDAY  GE P+WF
Sbjct: 309 RHWFLNARRFGMRMRSALMVAVYQKQLKLSSLGRRRHSSGQIVNYIAVDAYTTGEFPWWF 368

Query: 183 HSTWNYAIQLFLAIGVL 233
           HS W+Y +QLFL+IGVL
Sbjct: 369 HSAWSYILQLFLSIGVL 385



 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 40/57 (70%), Positives = 46/57 (80%)
 Frame = +3

Query: 63   VVYQKQLKLSSLGRR*HSTGEIVNYIVVDAYRMGECPFWFHSTWNYAIQLFLAIGVL 233
            +V +   KLSSLGRR HS GEIVNYIVVDAYRM E  +WFHS W+Y +QLFL+IGVL
Sbjct: 1787 LVLRALAKLSSLGRRRHSAGEIVNYIVVDAYRMAEFLWWFHSMWSYMLQLFLSIGVL 1843


>ref|XP_002276212.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera]
          Length = 1469

 Score =  130 bits (326), Expect = 1e-28
 Identities = 62/77 (80%), Positives = 68/77 (88%)
 Frame = +3

Query: 3   RHWFFNARRSGMRMRSALMVVVYQKQLKLSSLGRR*HSTGEIVNYIVVDAYRMGECPFWF 182
           RHWF ++RRSGMRMRSALMV VYQKQLKLSSLGRR HS GEIVNYIVVDAYRM E  +WF
Sbjct: 341 RHWFLDSRRSGMRMRSALMVAVYQKQLKLSSLGRRRHSAGEIVNYIVVDAYRMAEFLWWF 400

Query: 183 HSTWNYAIQLFLAIGVL 233
           HS W+Y +QLFL+IGVL
Sbjct: 401 HSMWSYMLQLFLSIGVL 417


>ref|XP_002327533.1| multidrug resistance protein ABC transporter family [Populus
           trichocarpa] gi|222836087|gb|EEE74508.1| multidrug
           resistance protein ABC transporter family [Populus
           trichocarpa]
          Length = 1253

 Score =  126 bits (316), Expect = 2e-27
 Identities = 60/77 (77%), Positives = 68/77 (88%)
 Frame = +3

Query: 3   RHWFFNARRSGMRMRSALMVVVYQKQLKLSSLGRR*HSTGEIVNYIVVDAYRMGECPFWF 182
           RH FF +R+SGMRMRSALMV +Y+KQL LSS GRR HSTGEIVNYI VDAYRMGE P+WF
Sbjct: 153 RHCFFYSRQSGMRMRSALMVAIYKKQLNLSSSGRRRHSTGEIVNYIAVDAYRMGEFPWWF 212

Query: 183 HSTWNYAIQLFLAIGVL 233
           HSTW+ A+QLFL+IGVL
Sbjct: 213 HSTWSLALQLFLSIGVL 229


Top