BLASTX nr result

ID: Cimicifuga21_contig00027976 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00027976
         (412 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273835.2| PREDICTED: protein BREAST CANCER SUSCEPTIBIL...    89   5e-16
emb|CBI30968.3| unnamed protein product [Vitis vinifera]               82   3e-14
emb|CAN67096.1| hypothetical protein VITISV_016807 [Vitis vinifera]    82   3e-14
ref|XP_003541671.1| PREDICTED: protein BREAST CANCER SUSCEPTIBIL...    75   5e-12
ref|XP_002531059.1| brca1 associated ring domain, putative [Rici...    72   6e-11

>ref|XP_002273835.2| PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Vitis
           vinifera]
          Length = 1044

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 59/138 (42%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
 Frame = -1

Query: 412 VNIHVTQNTPSTKTSDGENQPEGSSKFERSNTGDFSHRXXXXXXXXXXXXXXXXXXXXXE 233
           +N+ VTQN PSTK SD + Q EG          + S                       E
Sbjct: 84  INVFVTQNAPSTKLSD-KQQTEGDQNCGGQKADNASEERARNQRKLKGKGPKRSLKTNPE 142

Query: 232 TSDLQLPVKPSFPAKKRVHVPQCLPSETPTRLTKYEE-LGKKAEKGPWDGSNVLKEKPSF 56
            S L  P KPSFP KKRV VPQ   SETP R  K +  L + ++ GP + S VL EKP+ 
Sbjct: 143 DSGLN-PAKPSFPGKKRVQVPQYPLSETPKRPAKLDGGLSEMSKGGPKNNSVVLNEKPAL 201

Query: 55  TARGEPVFSPFFWLREIE 2
              GE VFSPFFWLRE E
Sbjct: 202 NDNGELVFSPFFWLREDE 219


>emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 58/138 (42%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
 Frame = -1

Query: 412 VNIHVTQNTPSTKTSDGENQPEGSSKFERSNTGDFSHRXXXXXXXXXXXXXXXXXXXXXE 233
           +N+ VTQN PSTK S  +N   G  K + +     S                       E
Sbjct: 538 INVFVTQNAPSTKLSGDQNC--GGQKADNA-----SEERARNQRKLKGKGPKRSLKTNPE 590

Query: 232 TSDLQLPVKPSFPAKKRVHVPQCLPSETPTRLTKYEE-LGKKAEKGPWDGSNVLKEKPSF 56
            S L  P KPSFP KKRV VPQ   SETP R  K +  L + ++ GP + S VL EKP+ 
Sbjct: 591 DSGLN-PAKPSFPGKKRVQVPQYPLSETPKRPAKLDGGLSEMSKGGPKNNSVVLNEKPAL 649

Query: 55  TARGEPVFSPFFWLREIE 2
              GE VFSPFFWLRE E
Sbjct: 650 NDNGELVFSPFFWLREDE 667


>emb|CAN67096.1| hypothetical protein VITISV_016807 [Vitis vinifera]
          Length = 952

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 58/147 (39%), Positives = 68/147 (46%), Gaps = 10/147 (6%)
 Frame = -1

Query: 412 VNIHVTQNTPSTKTSDG---------ENQPEGSSKFERSNTGDFSHRXXXXXXXXXXXXX 260
           +N+ VTQN PSTK S           + Q EG          + S               
Sbjct: 17  INVFVTQNAPSTKLSGDTCIPNMRMYKQQTEGDQNCGGQKADNASEERARNQRKLKGKGP 76

Query: 259 XXXXXXXXETSDLQLPVKPSFPAKKRVHVPQCLPSETPTRLTKYEE-LGKKAEKGPWDGS 83
                   E S L  P KPSFP KKRV VPQ   SETP R  K +  L + ++ GP + S
Sbjct: 77  KRSLKTNPEDSGLN-PAKPSFPGKKRVQVPQYPLSETPKRPAKLDGGLSEMSKGGPKNNS 135

Query: 82  NVLKEKPSFTARGEPVFSPFFWLREIE 2
            VL EKP+    GE VFSPFFWLRE E
Sbjct: 136 VVLNEKPALNDNGELVFSPFFWLREDE 162


>ref|XP_003541671.1| PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Glycine
           max]
          Length = 979

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 55/142 (38%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
 Frame = -1

Query: 412 VNIHVTQNTPSTKTSDGENQPEGSSKFERSNTGDFSHRXXXXXXXXXXXXXXXXXXXXXE 233
           VN  VTQN P T  SDGE + EG +   +   G  +H                       
Sbjct: 81  VNTFVTQNAPVTNLSDGEKECEGDADSGKMKAGG-THEGRPQEKKTRKKKKSKKTVQASM 139

Query: 232 TSDLQLPVKPSFPAKKRVHVPQCLPSETPTRLTK----YEELGKK---AEKGPWDGSNVL 74
            S      KPSFPAKKRVHVPQ L SETP +  K      E+ K+    EK P   S   
Sbjct: 140 ESSGSEFAKPSFPAKKRVHVPQNLLSETPMKNLKIGDSLSEINKEKEGTEKVPVKES--- 196

Query: 73  KEKPSFTARGEPVFSPFFWLRE 8
            E+P  + +  PV SPFFWLRE
Sbjct: 197 -ERPLQSEKDNPVLSPFFWLRE 217


>ref|XP_002531059.1| brca1 associated ring domain, putative [Ricinus communis]
           gi|223529354|gb|EEF31320.1| brca1 associated ring
           domain, putative [Ricinus communis]
          Length = 987

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
 Frame = -1

Query: 217 LPVKPSFPAKKRVHVPQCLPSETPTRLTKYE-ELGKKAEKGPWDGSNVLKEKPSFTARGE 41
           +  KPSFP KKRV VPQ LPS+TPTR  K E +  +    G  + S    E P  + +GE
Sbjct: 142 IAAKPSFPTKKRVQVPQSLPSKTPTRNEKLEIKSDENIRDGFKNSSLAQNENPVPSEKGE 201

Query: 40  PVFSPFFWLREIE 2
           PVFSPFFWLR+ E
Sbjct: 202 PVFSPFFWLRDEE 214


Top