BLASTX nr result
ID: Cimicifuga21_contig00027912
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00027912
(1075 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 466 e-129
ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containi... 466 e-129
ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containi... 464 e-128
ref|XP_002531063.1| pentatricopeptide repeat-containing protein,... 460 e-127
gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsu... 452 e-125
>ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71060, mitochondrial-like [Cucumis sativus]
Length = 542
Score = 466 bits (1200), Expect = e-129
Identities = 211/336 (62%), Positives = 278/336 (82%)
Frame = -3
Query: 1073 RKTKEALETFKKMEKFGMNLETSDFNRLIDTLSKSRHVKMAQEVFDEMKKKRFSPNIKTY 894
RK KEA+E+F+KMEKFG + SDFNRL+DTL KSR+VK AQEVFD+MK RF P+IK+Y
Sbjct: 204 RKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSY 263
Query: 893 SILLEGWGEERSIVMVKEVLREMEDEGFEPDVVTYSIVINAYCKSRKYDEALTVVREMEA 714
+ILLEGWG++++++ + EV REM DEGFEPDVVT+ I+INA+CK+RKYDEA+ + EMEA
Sbjct: 264 TILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEA 323
Query: 713 KKYRLSPHIYCTLINGLGAAKRLREALEFFAMSKQCGFAPEIPTYNAVVGSYCWSMQFED 534
K + SPH++CTLINGLG+ KRL+EALEFF K GFAPE PTYNAVVG+YCWSM+
Sbjct: 324 KNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAY 383
Query: 533 AFKVIEEMKQCGVAPNSRTYEIILHHLTKNRRTKDAHSVFEKMESEYGCMPSLNTYTMMV 354
A+++++EM++ GV PNSRTY+IILHHL K R++K+A+SVF++M E GC P+L+TY +M+
Sbjct: 384 AYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMI 443
Query: 353 SMFCDEERVDKALNVWSQMKAKGILPSMHMFSSLINGLCQDNRLDDACKYFQEMLDVGLR 174
MFC+EERVD A+ +W +MKAKG+LP MH+FS+LIN LC +++L+DAC YFQEMLDVG+R
Sbjct: 444 RMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIR 503
Query: 173 PPGQLYGNLKQALLDAGKKDMAISLGLKLDKIRKTP 66
PP ++ NLKQALLD G+KD A+ + K+ K+RK P
Sbjct: 504 PPATMFSNLKQALLDDGRKDTALLMAEKIXKLRKAP 539
Score = 111 bits (277), Expect = 4e-22
Identities = 72/288 (25%), Positives = 150/288 (52%), Gaps = 15/288 (5%)
Frame = -3
Query: 887 LLEGWGEERSIVMVKEVLREM---------------EDEGFEPDVVTYSIVINAYCKSRK 753
LL+G E S ++ EVL+++ + +GF+ +Y+++I A K ++
Sbjct: 112 LLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQ 171
Query: 752 YDEALTVVREMEAKKYRLSPHIYCTLINGLGAAKRLREALEFFAMSKQCGFAPEIPTYNA 573
++ +V +M+ +K LS + + A++++EA+E F ++ GF + +N
Sbjct: 172 FNVIWNLVSDMK-RKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNR 230
Query: 572 VVGSYCWSMQFEDAFKVIEEMKQCGVAPNSRTYEIILHHLTKNRRTKDAHSVFEKMESEY 393
++ + C S + A +V ++MK P+ ++Y I+L +++ + V+ +M E
Sbjct: 231 LLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDE- 289
Query: 392 GCMPSLNTYTMMVSMFCDEERVDKALNVWSQMKAKGILPSMHMFSSLINGLCQDNRLDDA 213
G P + T+ ++++ C + D+A+ ++ +M+AK I PS H+F +LINGL + RL +A
Sbjct: 290 GFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEA 349
Query: 212 CKYFQEMLDVGLRPPGQLYGNLKQALLDAGKKDMAISLGLKLDKIRKT 69
++F+++ G P Y + A + K A + +D++RK+
Sbjct: 350 LEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRM---VDEMRKS 394
>ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Cucumis sativus]
Length = 542
Score = 466 bits (1200), Expect = e-129
Identities = 211/336 (62%), Positives = 278/336 (82%)
Frame = -3
Query: 1073 RKTKEALETFKKMEKFGMNLETSDFNRLIDTLSKSRHVKMAQEVFDEMKKKRFSPNIKTY 894
RK KEA+E+F+KMEKFG + SDFNRL+DTL KSR+VK AQEVFD+MK RF P+IK+Y
Sbjct: 204 RKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSY 263
Query: 893 SILLEGWGEERSIVMVKEVLREMEDEGFEPDVVTYSIVINAYCKSRKYDEALTVVREMEA 714
+ILLEGWG++++++ + EV REM DEGFEPDVVT+ I+INA+CK+RKYDEA+ + EMEA
Sbjct: 264 TILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEA 323
Query: 713 KKYRLSPHIYCTLINGLGAAKRLREALEFFAMSKQCGFAPEIPTYNAVVGSYCWSMQFED 534
K + SPH++CTLINGLG+ KRL+EALEFF K GFAPE PTYNAVVG+YCWSM+
Sbjct: 324 KNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAY 383
Query: 533 AFKVIEEMKQCGVAPNSRTYEIILHHLTKNRRTKDAHSVFEKMESEYGCMPSLNTYTMMV 354
A+++++EM++ GV PNSRTY+IILHHL K R++K+A+SVF++M E GC P+L+TY +M+
Sbjct: 384 AYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMI 443
Query: 353 SMFCDEERVDKALNVWSQMKAKGILPSMHMFSSLINGLCQDNRLDDACKYFQEMLDVGLR 174
MFC+EERVD A+ +W +MKAKG+LP MH+FS+LIN LC +++L+DAC YFQEMLDVG+R
Sbjct: 444 RMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIR 503
Query: 173 PPGQLYGNLKQALLDAGKKDMAISLGLKLDKIRKTP 66
PP ++ NLKQALLD G+KD A+ + K+ K+RK P
Sbjct: 504 PPATMFSNLKQALLDDGRKDTALLMAEKIKKLRKAP 539
Score = 111 bits (277), Expect = 4e-22
Identities = 72/288 (25%), Positives = 150/288 (52%), Gaps = 15/288 (5%)
Frame = -3
Query: 887 LLEGWGEERSIVMVKEVLREM---------------EDEGFEPDVVTYSIVINAYCKSRK 753
LL+G E S ++ EVL+++ + +GF+ +Y+++I A K ++
Sbjct: 112 LLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQ 171
Query: 752 YDEALTVVREMEAKKYRLSPHIYCTLINGLGAAKRLREALEFFAMSKQCGFAPEIPTYNA 573
++ +V +M+ +K LS + + A++++EA+E F ++ GF + +N
Sbjct: 172 FNVIWNLVSDMK-RKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNR 230
Query: 572 VVGSYCWSMQFEDAFKVIEEMKQCGVAPNSRTYEIILHHLTKNRRTKDAHSVFEKMESEY 393
++ + C S + A +V ++MK P+ ++Y I+L +++ + V+ +M E
Sbjct: 231 LLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDE- 289
Query: 392 GCMPSLNTYTMMVSMFCDEERVDKALNVWSQMKAKGILPSMHMFSSLINGLCQDNRLDDA 213
G P + T+ ++++ C + D+A+ ++ +M+AK I PS H+F +LINGL + RL +A
Sbjct: 290 GFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEA 349
Query: 212 CKYFQEMLDVGLRPPGQLYGNLKQALLDAGKKDMAISLGLKLDKIRKT 69
++F+++ G P Y + A + K A + +D++RK+
Sbjct: 350 LEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRM---VDEMRKS 394
>ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial [Vitis vinifera]
Length = 531
Score = 464 bits (1193), Expect = e-128
Identities = 214/335 (63%), Positives = 274/335 (81%)
Frame = -3
Query: 1073 RKTKEALETFKKMEKFGMNLETSDFNRLIDTLSKSRHVKMAQEVFDEMKKKRFSPNIKTY 894
RK KEA+ETF+KMEKFG+ SDFNRL+D L KSRHV+ AQEVFD+MK ++F P+IK+Y
Sbjct: 193 RKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSY 252
Query: 893 SILLEGWGEERSIVMVKEVLREMEDEGFEPDVVTYSIVINAYCKSRKYDEALTVVREMEA 714
+ILLEGWG+E++++ + EV REM+DEGFEPD VTY I+INA+CK+R+YD A+ + +MEA
Sbjct: 253 TILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEA 312
Query: 713 KKYRLSPHIYCTLINGLGAAKRLREALEFFAMSKQCGFAPEIPTYNAVVGSYCWSMQFED 534
K +PHIYCTLINGLG+ +RL EAL+FF SK GF PE PTYNAVVGSYC SM+ +D
Sbjct: 313 NKCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDD 372
Query: 533 AFKVIEEMKQCGVAPNSRTYEIILHHLTKNRRTKDAHSVFEKMESEYGCMPSLNTYTMMV 354
A+++++EM++CGV P +RTY+IILHHL K RRTK+A+ VF+ M SE GC PS++TY ++V
Sbjct: 373 AYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVV 432
Query: 353 SMFCDEERVDKALNVWSQMKAKGILPSMHMFSSLINGLCQDNRLDDACKYFQEMLDVGLR 174
MFC+EERVD AL VW +MKAKG+LP MHMFS+LIN LC +N+LD+ACKYF EMLD+G+R
Sbjct: 433 RMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGIR 492
Query: 173 PPGQLYGNLKQALLDAGKKDMAISLGLKLDKIRKT 69
PP ++ NLKQ LLD GK+DM + L KLDKIR T
Sbjct: 493 PPAAMFSNLKQTLLDEGKQDMVLILAQKLDKIRTT 527
Score = 126 bits (317), Expect = 8e-27
Identities = 80/320 (25%), Positives = 152/320 (47%), Gaps = 2/320 (0%)
Frame = -3
Query: 1058 ALETFKKMEKF-GMNLETSDFNRLIDTLSKSRHVKMAQEVFDEMKKKRFSPNIKTYSILL 882
AL F+ EK G T ++N LI+ L K + KM + ++M+ K +T++++
Sbjct: 128 ALSFFRWAEKQKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGLLTQ-ETFALIS 186
Query: 881 EGWGEERSIVMVKEVLREMEDEGFEPDVVTYSIVINAYCKSRKYDEALTVVREMEAKKYR 702
+ R + E +ME G +P + ++ +++A CKSR + A V +M+ +K+R
Sbjct: 187 RRYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFR 246
Query: 701 LSPHIYCTLINGLGAAKRLREALEFFAMSKQCGFAPEIPTYNAVVGSYCWSMQFEDAFKV 522
Y L+ G G + L E + K GF P+ TY ++ ++C + +++ A ++
Sbjct: 247 PDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVEL 306
Query: 521 IEEMKQCGVAPNSRTYEIILHHLTKNRRTKDAHSVFEKMESEYGCMPSLNTYTMMVSMFC 342
+M+ P Y +++ L RR +A FE+ ++ G P TY +V +C
Sbjct: 307 FHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKAS-GFTPEAPTYNAVVGSYC 365
Query: 341 DEERVDKALNVWSQMKAKGILPSMHMFSSLINGLCQDNRLDDACKYFQEM-LDVGLRPPG 165
R+D A + +M+ G+ P + +++ L + R +A + FQ M + G P
Sbjct: 366 QSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSV 425
Query: 164 QLYGNLKQALLDAGKKDMAI 105
Y + + + + DMA+
Sbjct: 426 STYEIVVRMFCNEERVDMAL 445
>ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223529358|gb|EEF31324.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 533
Score = 460 bits (1184), Expect = e-127
Identities = 211/336 (62%), Positives = 276/336 (82%)
Frame = -3
Query: 1070 KTKEALETFKKMEKFGMNLETSDFNRLIDTLSKSRHVKMAQEVFDEMKKKRFSPNIKTYS 891
K KEA+ TF+KMEKFG+ +E++DFNRL+DTL KSR V AQ VFD+MK +RF P+IK+Y+
Sbjct: 196 KVKEAMNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYT 255
Query: 890 ILLEGWGEERSIVMVKEVLREMEDEGFEPDVVTYSIVINAYCKSRKYDEALTVVREMEAK 711
ILLEGWG+E++++ + EV REM+DEGFEPDVVTY I+INAYCK RKYD+A+ + REME+K
Sbjct: 256 ILLEGWGQEKNLLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESK 315
Query: 710 KYRLSPHIYCTLINGLGAAKRLREALEFFAMSKQCGFAPEIPTYNAVVGSYCWSMQFEDA 531
+ SPHI+CTLINGLG+ +RL EALEFF SK GFAPE PTYNAVVG+YCWSM+ +DA
Sbjct: 316 NCQPSPHIFCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDA 375
Query: 530 FKVIEEMKQCGVAPNSRTYEIILHHLTKNRRTKDAHSVFEKMESEYGCMPSLNTYTMMVS 351
+++++EM++ GV PNSRTY+IILHHL K +T +A SVFEKM SE C P+++TY ++V
Sbjct: 376 YRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVR 435
Query: 350 MFCDEERVDKALNVWSQMKAKGILPSMHMFSSLINGLCQDNRLDDACKYFQEMLDVGLRP 171
MFC+ ++V+ A+ VW +MKAKG+ P MHMFS LIN LC +N+LD ACKYFQEMLDVG+RP
Sbjct: 436 MFCNMDKVESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRP 495
Query: 170 PGQLYGNLKQALLDAGKKDMAISLGLKLDKIRKTPF 63
P L+ +LKQAL++ G+KD + L K+DK+RKTP+
Sbjct: 496 PAALFSHLKQALIEDGRKDTVVLLAQKIDKLRKTPY 531
Score = 112 bits (281), Expect = 1e-22
Identities = 69/290 (23%), Positives = 137/290 (47%), Gaps = 1/290 (0%)
Frame = -3
Query: 1058 ALETFKKMEKF-GMNLETSDFNRLIDTLSKSRHVKMAQEVFDEMKKKRFSPNIKTYSILL 882
AL FK EK G T +N LID+L K + M + ++MK+K +T++++
Sbjct: 130 ALSFFKWAEKQKGFMYNTESYNALIDSLGKIKQFNMIWNLVNDMKRKGVLTK-ETFALIS 188
Query: 881 EGWGEERSIVMVKEVLREMEDEGFEPDVVTYSIVINAYCKSRKYDEALTVVREMEAKKYR 702
+ + +ME G + + ++ +++ KSR+ A V +M+ +++
Sbjct: 189 RRYARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFV 248
Query: 701 LSPHIYCTLINGLGAAKRLREALEFFAMSKQCGFAPEIPTYNAVVGSYCWSMQFEDAFKV 522
Y L+ G G K L + E + K GF P++ TY ++ +YC +++DA ++
Sbjct: 249 PDIKSYTILLEGWGQEKNLLKLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIEL 308
Query: 521 IEEMKQCGVAPNSRTYEIILHHLTKNRRTKDAHSVFEKMESEYGCMPSLNTYTMMVSMFC 342
EM+ P+ + +++ L RR +A F + ++ G P TY +V +C
Sbjct: 309 FREMESKNCQPSPHIFCTLINGLGSVRRLSEALEFFRRSKAS-GFAPETPTYNAVVGAYC 367
Query: 341 DEERVDKALNVWSQMKAKGILPSMHMFSSLINGLCQDNRLDDACKYFQEM 192
R+D A + +M+ G+ P+ + +++ L + + +A F++M
Sbjct: 368 WSMRIDDAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKM 417
>gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463006|gb|ACP39955.1| pentatricopeptide repeat
protein [Gossypium hirsutum]
Length = 547
Score = 452 bits (1164), Expect = e-125
Identities = 207/336 (61%), Positives = 271/336 (80%)
Frame = -3
Query: 1073 RKTKEALETFKKMEKFGMNLETSDFNRLIDTLSKSRHVKMAQEVFDEMKKKRFSPNIKTY 894
RK +EA+E F++ME+FG LETSDFNRL+DTL KSRHV+ A +VFD+MKK+RF P+IK+Y
Sbjct: 205 RKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSY 264
Query: 893 SILLEGWGEERSIVMVKEVLREMEDEGFEPDVVTYSIVINAYCKSRKYDEALTVVREMEA 714
+ILLEGWG+E +++ + EV EM+ +GFEPDVVTY I+I+AYCK++KYD A+ + EMEA
Sbjct: 265 TILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEMEA 324
Query: 713 KKYRLSPHIYCTLINGLGAAKRLREALEFFAMSKQCGFAPEIPTYNAVVGSYCWSMQFED 534
K + +PH+YCTLINGLG+ KRL EALEFF K CGF PE PTYN++VG+YCWSM+ +D
Sbjct: 325 KNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDD 384
Query: 533 AFKVIEEMKQCGVAPNSRTYEIILHHLTKNRRTKDAHSVFEKMESEYGCMPSLNTYTMMV 354
AF+VI+EM++ PNSRTY+IILHHL K RRT +A+ F+KM +E GC P+++TY ++V
Sbjct: 385 AFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIV 444
Query: 353 SMFCDEERVDKALNVWSQMKAKGILPSMHMFSSLINGLCQDNRLDDACKYFQEMLDVGLR 174
MFC+E+RVD A VW QMKAKG+LP MHM+S LI LC N+L +ACKYFQEMLD G+R
Sbjct: 445 RMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIR 504
Query: 173 PPGQLYGNLKQALLDAGKKDMAISLGLKLDKIRKTP 66
PP +++ NLKQALLD GK D A++L K++K+R TP
Sbjct: 505 PPAKMFSNLKQALLDEGKNDEALNLARKINKLRGTP 540