BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00027870
         (331 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD15368.1| putative retroelement pol polyprotein [Arabidopsi...    68   2e-11
gb|AAF69161.1|AC007915_13 F27F5.19 [Arabidopsis thaliana]              64   4e-11
emb|CAN74230.1| hypothetical protein VITISV_000585 [Vitis vinifera]    59   2e-10
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi...    65   3e-10
emb|CAN63908.1| hypothetical protein VITISV_044218 [Vitis vinifera]    60   5e-10

>gb|AAD15368.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
           gi|17065314|gb|AAL32811.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|21387147|gb|AAM47977.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
          Length = 411

 Score = 67.8 bits (164), Expect(2) = 2e-11
 Identities = 32/50 (64%), Positives = 36/50 (72%)
 Frame = -1

Query: 214 NLWSRAMSTTLNAKNKL*FVDGSKPMPSSDTSDLKIWKRCNDMVKSWLLN 65
           N WS AM  +L+AKNKL FVDGS   PS D S  +IW RCN MVKSW+LN
Sbjct: 90  NSWSIAMRISLDAKNKLGFVDGSLLRPSVDDSTFRIWSRCNSMVKSWILN 139



 Score = 25.8 bits (55), Expect(2) = 2e-11
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 302 NGNHHKISTQFLKPFFLYHSDKLGLSLVTQPLE 204
           NG++ K+      P  L+ SD  GLS+V   L+
Sbjct: 53  NGSNPKVPDNVDNPLILHSSDHPGLSIVAHVLD 85


>gb|AAF69161.1|AC007915_13 F27F5.19 [Arabidopsis thaliana]
          Length = 1309

 Score = 64.3 bits (155), Expect(2) = 4e-11
 Identities = 30/50 (60%), Positives = 34/50 (68%)
 Frame = -1

Query: 214 NLWSRAMSTTLNAKNKL*FVDGSKPMPSSDTSDLKIWKRCNDMVKSWLLN 65
           N WS AM  +L+AKNKL FVDGS P P       +IW RCN MVK+WLLN
Sbjct: 91  NNWSIAMRMSLDAKNKLSFVDGSLPRPDVSDRMFRIWSRCNSMVKTWLLN 140



 Score = 28.1 bits (61), Expect(2) = 4e-11
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 263 PFFLYHSDKLGLSLVTQPLESRYEHN 186
           PFFL+ SD LGL++V+  L+    +N
Sbjct: 67  PFFLHSSDHLGLNIVSHVLDGTSYNN 92


>emb|CAN74230.1| hypothetical protein VITISV_000585 [Vitis vinifera]
          Length = 334

 Score = 59.3 bits (142), Expect(2) = 2e-10
 Identities = 28/48 (58%), Positives = 33/48 (68%)
 Frame = -1

Query: 208 WSRAMSTTLNAKNKL*FVDGSKPMPSSDTSDLKIWKRCNDMVKSWLLN 65
           WSRAM  +L+AK+K+ FV GS   PSS       W+RCNDMV SWLLN
Sbjct: 46  WSRAMRISLSAKDKIGFVTGSIKPPSSTDDSFPSWQRCNDMVISWLLN 93



 Score = 30.4 bits (67), Expect(2) = 2e-10
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 287 KISTQFLKPFFLYHSDKLGLSLVTQPLE 204
           K +T+ L PF L+HSD  G+ LV++ LE
Sbjct: 12  KATTEALDPFSLHHSDHPGMVLVSKVLE 39


>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1461

 Score = 65.1 bits (157), Expect(2) = 3e-10
 Identities = 29/48 (60%), Positives = 34/48 (70%)
 Frame = -1

Query: 208 WSRAMSTTLNAKNKL*FVDGSKPMPSSDTSDLKIWKRCNDMVKSWLLN 65
           WS AM  +L+AKNKL FVDGS P P     + ++W RCN MVKSWLLN
Sbjct: 91  WSVAMRISLDAKNKLGFVDGSLPRPLESDPNFRLWSRCNSMVKSWLLN 138



 Score = 24.3 bits (51), Expect(2) = 3e-10
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 263 PFFLYHSDKLGLSLVTQPLE 204
           PFFL+ +D  GLS+++  L+
Sbjct: 65  PFFLHSADHPGLSIISHRLD 84


>emb|CAN63908.1| hypothetical protein VITISV_044218 [Vitis vinifera]
          Length = 1236

 Score = 60.1 bits (144), Expect(2) = 5e-10
 Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
 Frame = -1

Query: 208 WSRAMSTTLNAKNKL*FVDGSKPMPSS--DTSDLKIWKRCNDMVKSWLLN 65
           W RAM+ +LNAK+KL F+DG+  MPS+     +  +WK+CNDM+ SW+LN
Sbjct: 43  WCRAMTISLNAKSKLGFIDGTTTMPSATDKPDEHALWKKCNDMILSWILN 92



 Score = 28.5 bits (62), Expect(2) = 5e-10
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -3

Query: 263 PFFLYHSDKLGLSLVTQPL 207
           P+FL+HSD  G+ L+++PL
Sbjct: 17  PYFLHHSDHPGIVLISKPL 35