BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00027671
         (402 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containi...   125   5e-27
ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containi...   119   3e-25
ref|XP_003602633.1| Pentatricopeptide repeat-containing protein ...   100   1e-19
ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containi...    99   3e-19
ref|XP_002516308.1| pentatricopeptide repeat-containing protein,...    94   9e-18

>ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  125 bits (313), Expect = 5e-27
 Identities = 58/99 (58%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
 Frame = -1

Query: 294 SAIDPIH-HYAFLVEKCISTKHLKFGKLLHSHLIKTALNLNIFLTNRLIDMYAKCNSLQC 118
           S++DP H HY+ L+ KCI+T+HLK GKLLHSH IKTAL    FL NRLID Y+KC+S+Q 
Sbjct: 8   SSLDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQS 67

Query: 117 AQNAFADLPTKNTHTWNTIISAFSQLGSFHKARHLFEEM 1
           A   F  LP KNTH+WN IISA+S+ G F++A +L ++M
Sbjct: 68  AHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQM 106



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
 Frame = -1

Query: 270 YAFLVEKCISTKHLKFGKLLHSHLIKTALN---LNIFLTNRLIDMYAKCNSLQCAQNAFA 100
           +A ++  C     +  GK +H H+I++       NIF+ N LIDMY KC  ++ A   F 
Sbjct: 283 FASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFK 342

Query: 99  DLPTKNTHTWNTIISAFSQLGSFHKARHLFEEM 1
            +  K+  +WN++I+ F+Q G   ++  +FE M
Sbjct: 343 GMHEKDIVSWNSLITGFAQNGHGEESLAVFERM 375


>ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
           gi|449526377|ref|XP_004170190.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 577

 Score =  119 bits (297), Expect = 3e-25
 Identities = 54/91 (59%), Positives = 71/91 (78%)
 Frame = -1

Query: 273 HYAFLVEKCISTKHLKFGKLLHSHLIKTALNLNIFLTNRLIDMYAKCNSLQCAQNAFADL 94
           H A L  KCI  KHL+ G  LHSHLIKTAL+ ++FL NRLIDMY+KCNS++ AQ AF DL
Sbjct: 13  HCARLFSKCIQHKHLRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDL 72

Query: 93  PTKNTHTWNTIISAFSQLGSFHKARHLFEEM 1
           P +N H+WNTI++++S+ G F +AR +F+EM
Sbjct: 73  PIRNIHSWNTILASYSRAGFFSQARKVFDEM 103


>ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491681|gb|AES72884.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  100 bits (249), Expect = 1e-19
 Identities = 51/106 (48%), Positives = 67/106 (63%)
 Frame = -1

Query: 318 IMFTTTITSAIDPIHHYAFLVEKCISTKHLKFGKLLHSHLIKTALNLNIFLTNRLIDMYA 139
           +MF T   S+   I  ++ L+  C+S K LK GK LHS LIKTAL    FL N LID+Y+
Sbjct: 67  VMFHTNDFSST--IEKFSSLISNCVSAKSLKHGKALHSQLIKTALFFETFLANGLIDLYS 124

Query: 138 KCNSLQCAQNAFADLPTKNTHTWNTIISAFSQLGSFHKARHLFEEM 1
           KC   +    AF DLP K T TWNT++S +S+ G F++A  LF+EM
Sbjct: 125 KCGCKESIHKAFDDLPNKTTRTWNTLLSFYSKKGVFNQAYKLFDEM 170



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
 Frame = -1

Query: 270 YAFLVEKCISTKHLKFGKLLHSHLIK--TALNL-NIFLTNRLIDMYAKCNSLQCAQNAF- 103
           +  +++ C S   +  GK +H  +I+  ++ NL N+++ N L+DMYAKC  ++ A+N F 
Sbjct: 347 FVSVLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFE 406

Query: 102 ADLPTKNTHTWNTIISAFSQLGSFHKARHLFEEM 1
             +  K+  +WNT+I+ F+Q G    +  +F+ M
Sbjct: 407 MMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRM 440


>ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 44/96 (45%), Positives = 62/96 (64%)
 Frame = -1

Query: 288 IDPIHHYAFLVEKCISTKHLKFGKLLHSHLIKTALNLNIFLTNRLIDMYAKCNSLQCAQN 109
           I  +  Y+FL+ KCI+ + +K    +H HLIKTAL  + FL N LID Y+KC   + A  
Sbjct: 7   ISSVEKYSFLISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHK 66

Query: 108 AFADLPTKNTHTWNTIISAFSQLGSFHKARHLFEEM 1
            F DLP K T +WNT+IS +S+ G F +A +LF++M
Sbjct: 67  TFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKM 102



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
 Frame = -1

Query: 270 YAFLVEKCISTKHLKFGKLLHSHLI---KTALNLNIFLTNRLIDMYAKCNSLQCAQNAFA 100
           +  +++ C     +  GK +H  +I   K+    N+++ N LIDMYAKC  ++ A+N F 
Sbjct: 237 FVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFE 296

Query: 99  DLPTKNTHTWNTIISAFSQLGSFHKARHLFEEM 1
             P ++  TWNT+I+ F+Q G   ++  +F  M
Sbjct: 297 MAPMRDVVTWNTLITGFAQNGHGEESLAVFRRM 329


>ref|XP_002516308.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544538|gb|EEF46055.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 599

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 44/87 (50%), Positives = 61/87 (70%)
 Frame = -1

Query: 261 LVEKCISTKHLKFGKLLHSHLIKTALNLNIFLTNRLIDMYAKCNSLQCAQNAFADLPTKN 82
           L  KCIST++LK G  LHS LIKTAL  + F +NR++D+Y+K N +  AQ  F D P KN
Sbjct: 13  LFSKCISTRNLKLGLTLHSFLIKTALICSPFFSNRVMDLYSKFNVIDSAQKVFDDNPIKN 72

Query: 81  THTWNTIISAFSQLGSFHKARHLFEEM 1
            H+WNT+I  ++++G F  AR LF++M
Sbjct: 73  IHSWNTMIGGYARVGLFDNARDLFDKM 99



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
 Frame = -1

Query: 249 CISTKHLKFGKLLHSHLIKTALN---LNIFLTNRLIDMYAKCNSLQCAQNAFADLPTKNT 79
           C     ++ GK +H H+I+++      N+++ N LIDMY KC  ++ +++ F  +  K+ 
Sbjct: 241 CADLALIERGKQIHGHIIRSSGRTDLFNMYVYNALIDMYCKCGDMKSSKSLFEGMSEKDI 300

Query: 78  HTWNTIISAFSQLGSFHKARHLFEEM 1
            +WN++I+  +Q G   ++  LF +M
Sbjct: 301 VSWNSLITGLAQNGHAEESLDLFRKM 326