BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00027635
         (498 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]   144   1e-32
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   137   9e-31
emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera]   130   8e-29
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]              129   2e-28
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]   128   4e-28

>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score =  144 bits (362), Expect = 1e-32
 Identities = 71/164 (43%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
 Frame = +3

Query: 9   NRPICQICNKAGHYAIDCFDRMNHAFHGRIPPQKLQAMVAERNPGSFSSNTPWIADTGAT 188
           NRP+CQIC K+GH AIDCF R ++++ GR PPQ L AMVAE N  +   +  W  D+GA 
Sbjct: 271 NRPVCQICGKSGHTAIDCFHRFDYSYQGRFPPQDLAAMVAETN--ATFDHQVWYMDSGAN 328

Query: 189 HHLTNDLENLNISTPYTGSDQILVGDGQLLHIENKGNGILPTPRKSFLLKEILHVPNISN 368
            H+T+D  NL    P+  S+ + VG+G  L + N G+      + +F L +ILH P  + 
Sbjct: 329 AHITSDATNLTHQQPFCESETVTVGNGSGLQVLNTGSTTFNFGQSNFHLNKILHCPQAAT 388

Query: 369 NLLSVQQFTEDNNCSITFTSTHFYVKDKV-GMMLFQGPINDGLY 497
           NL+S+ QF  DNNC    T+  F VK+ + G +L QG + +GLY
Sbjct: 389 NLISINQFCLDNNCYFILTANGFVVKENLTGRILLQGVVENGLY 432


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  137 bits (345), Expect = 9e-31
 Identities = 68/164 (41%), Positives = 99/164 (60%), Gaps = 1/164 (0%)
 Frame = +3

Query: 9   NRPICQICNKAGHYAIDCFDRMNHAFHGRIPPQKLQAMVAERNPGSFSSNTPWIADTGAT 188
           +RP CQ+C++ GH A++C+ R +  +   +P Q+     A +N     SN PW  DTGAT
Sbjct: 278 SRPRCQVCSRVGHTALNCWYRFDENY---VPDQRSANSAAHQN----GSNVPWYTDTGAT 330

Query: 189 HHLTNDLENLNISTPYTGSDQILVGDGQLLHIENKGNGILPTPRKSFLLKEILHVPNISN 368
            H+T DL+ L +   YTG+DQI+  +G  + I N GN I+PT  +S  L+ +LHVP+   
Sbjct: 331 DHITGDLDRLTMHDKYTGTDQIIAANGTGMTISNIGNAIVPTSSRSLHLRSVLHVPSTHK 390

Query: 369 NLLSVQQFTEDNNCSITFTSTHFYVKDK-VGMMLFQGPINDGLY 497
           NL+SV + T DN+  I F S+HF +KD+    +L  G   DGLY
Sbjct: 391 NLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLY 434


>emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera]
          Length = 1131

 Score =  130 bits (328), Expect = 8e-29
 Identities = 69/163 (42%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
 Frame = +3

Query: 12  RPICQICNKAGHYAIDCFDRMNHAFHGRIPPQKLQAMVAERNPGSFSSNTPWIADTGATH 191
           +P CQ+C K GH AI+C+ R +  +   +    L AMVA   P +    + W  DTGATH
Sbjct: 253 KPQCQVCGKYGHIAINCYHRFDQTYQPTMN-NHLAAMVA--TPSTVGDES-WYMDTGATH 308

Query: 192 HLTNDLENLNISTPYTGSDQILVGDGQLLHIENKGNGILPTPRKSFLLKEILHVPNISNN 371
           HLT +L  LN  TP+ GSD+++VG+G  L+I N G+  + +  +S  LK ILHVP ++ N
Sbjct: 309 HLTPNLNKLNSHTPFAGSDKVMVGNGNRLNISNIGHSTISSVSRSLNLKNILHVPQLTTN 368

Query: 372 LLSVQQFTEDNNCSITFTSTHFYVKDKVG-MMLFQGPINDGLY 497
           L+SV +   DNN ++ F +  F VKD+     L QG +N GLY
Sbjct: 369 LISVNRLCTDNNVTVEFFTNGFVVKDQASKKALLQGNLNYGLY 411


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score =  129 bits (325), Expect = 2e-28
 Identities = 69/161 (42%), Positives = 96/161 (59%), Gaps = 2/161 (1%)
 Frame = +3

Query: 21  CQICNKAGHYAIDCFDRMNHAFHGRIPPQKLQAMVAERNPGSFSSNTPWIADTGATHHLT 200
           CQIC++ GH AIDCF+R+N ++ GR+P  +L AM A  +P    S   W+ DTGA  H+T
Sbjct: 304 CQICSRPGHSAIDCFNRLNLSYEGRVPSSRLNAMTAHHSP----SEETWLTDTGANSHVT 359

Query: 201 NDLENLNISTPYTGSDQI-LVGDGQLLHIENKGNGILPTPRKSFLLKEILHVPNISNNLL 377
            +L N++    Y G D +  +     L I++ G+  L +   SF L +ILH P+ S NLL
Sbjct: 360 PNLGNIDSPKSYKGLDNLGGINSDSGLSIKHIGSSKLNSSSSSFHLNDILHCPSASTNLL 419

Query: 378 SVQQFTEDNNCSITFTSTHFYVKD-KVGMMLFQGPINDGLY 497
           SV +FT DN+C   F   +F VKD K G ML+ G   +GLY
Sbjct: 420 SVYKFTIDNHCYFIFYPNYFCVKDLKTGKMLYHGKSENGLY 460


>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
          Length = 1449

 Score =  128 bits (322), Expect = 4e-28
 Identities = 69/176 (39%), Positives = 102/176 (57%), Gaps = 13/176 (7%)
 Frame = +3

Query: 9   NRPICQICNKAGHYAIDCFDRMNHAFHGRIP------------PQKLQAMVAERNPGSFS 152
           +RP CQ+C K GH  + C+ R +  F G  P              ++QAM+A  +P + S
Sbjct: 317 HRPQCQLCGKFGHTVVRCYHRFDINFQGYNPNMDTVQTNKPNAKNQVQAMMA--SPSTIS 374

Query: 153 SNTPWIADTGATHHLTNDLENLNISTPYTGSDQILVGDGQLLHIENKGNGILPTPRKSFL 332
               W  DTGATHHL+  ++ L+   PY G+D+++VG+G+ L I + G    P+  K+F 
Sbjct: 375 DEA-WFFDTGATHHLSQSIDPLSDVQPYMGNDKVIVGNGKHLRILHTGTTFFPSSSKTFQ 433

Query: 333 LKEILHVPNISNNLLSVQQFTEDNNCSITFTSTHFYVKDKV-GMMLFQGPINDGLY 497
           L+++LHVP+I+ NL+SV QF  DNN    F    F+VKD+V   +L QG +  GLY
Sbjct: 434 LRQVLHVPDIATNLISVSQFCADNNTFFEFHPRFFFVKDQVTKKILLQGSLEHGLY 489