BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00027624
         (467 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004148880.1| PREDICTED: U3 small nucleolar RNA-associated...    48   2e-10
ref|XP_003518943.1| PREDICTED: U3 small nucleolar RNA-associated...    51   2e-09
ref|XP_003591585.1| U3 small nucleolar RNA-associated protein-li...    48   2e-09
ref|XP_003637374.1| U3 small nucleolar RNA-associated protein-li...    48   2e-09
ref|XP_002321043.1| predicted protein [Populus trichocarpa] gi|2...    50   3e-09

>ref|XP_004148880.1| PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog
           [Cucumis sativus] gi|449528790|ref|XP_004171386.1|
           PREDICTED: U3 small nucleolar RNA-associated protein 15
           homolog [Cucumis sativus]
          Length = 528

 Score = 48.1 bits (113), Expect(2) = 2e-10
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = -2

Query: 463 GLIATSGGISVKIRNVSGDGKAVHTLESHNMTVKSIC 353
           GL+AT+GG SVKI +V G GK V ++ESHN TV S+C
Sbjct: 230 GLVATAGGNSVKIWDVIGGGKMVCSMESHNKTVTSLC 266



 Score = 41.6 bits (96), Expect(2) = 2e-10
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -1

Query: 374 HDS*INLFC*VKK---DGGEDSDEFWL*VCLLMDI*KFFIIQHLKLTPSTRFPALLLTVE 204
           H+  +   C  KK   D GE+SD+F +    L    K F    +K+T S RFP  L++V 
Sbjct: 258 HNKTVTSLCVGKKLGQDSGEESDQFRILSVALDGYMKVFDYSKMKVTHSMRFPTPLMSVG 317

Query: 203 LSPDC 189
            SPDC
Sbjct: 318 FSPDC 322


>ref|XP_003518943.1| PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog
           [Glycine max]
          Length = 531

 Score = 51.2 bits (121), Expect(2) = 2e-09
 Identities = 24/43 (55%), Positives = 33/43 (76%)
 Frame = -2

Query: 463 GLIATSGGISVKIRNVSGDGKAVHTLESHNMTVKSICFVRLRK 335
           G++AT+GG SVKI ++ G GK V+++ESHN TV SIC  R+ K
Sbjct: 227 GMVATAGGNSVKIWDLIGGGKLVYSMESHNKTVTSICVGRIGK 269



 Score = 35.8 bits (81), Expect(2) = 2e-09
 Identities = 23/51 (45%), Positives = 28/51 (54%)
 Frame = -1

Query: 341 KKDGGEDSDEFWL*VCLLMDI*KFFIIQHLKLTPSTRFPALLLTVELSPDC 189
           K  G E S++F +    L    K F    LK+T S RFPA LL+V  SPDC
Sbjct: 269 KDYGEESSNQFRIMSVGLDGYLKVFDYGSLKVTHSMRFPAPLLSVAYSPDC 319


>ref|XP_003591585.1| U3 small nucleolar RNA-associated protein-like protein [Medicago
           truncatula] gi|357442643|ref|XP_003591599.1| U3 small
           nucleolar RNA-associated protein-like protein [Medicago
           truncatula] gi|355480633|gb|AES61836.1| U3 small
           nucleolar RNA-associated protein-like protein [Medicago
           truncatula] gi|355480647|gb|AES61850.1| U3 small
           nucleolar RNA-associated protein-like protein [Medicago
           truncatula]
          Length = 530

 Score = 47.8 bits (112), Expect(2) = 2e-09
 Identities = 22/43 (51%), Positives = 32/43 (74%)
 Frame = -2

Query: 463 GLIATSGGISVKIRNVSGDGKAVHTLESHNMTVKSICFVRLRK 335
           G+IAT+GG +VKI ++ G G+ V+++ESHN TV  IC  R+ K
Sbjct: 228 GMIATAGGNAVKIWDLIGGGRLVYSMESHNKTVTKICVGRIGK 270



 Score = 39.3 bits (90), Expect(2) = 2e-09
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = -1

Query: 344 VKKDGGEDSDEFWL*VCLLMDI*KFFIIQHLKLTPSTRFPALLLTVELSPDC 189
           + KD G++SD++ +    L    K F   ++K+T S R+PA LL+V  SPDC
Sbjct: 268 IGKDSGDESDQYRIMSVGLDGYFKVFDYGNMKVTYSMRYPAPLLSVGYSPDC 319


>ref|XP_003637374.1| U3 small nucleolar RNA-associated protein-like protein, partial
           [Medicago truncatula] gi|355503309|gb|AES84512.1| U3
           small nucleolar RNA-associated protein-like protein,
           partial [Medicago truncatula]
          Length = 452

 Score = 47.8 bits (112), Expect(2) = 2e-09
 Identities = 22/43 (51%), Positives = 32/43 (74%)
 Frame = -2

Query: 463 GLIATSGGISVKIRNVSGDGKAVHTLESHNMTVKSICFVRLRK 335
           G+IAT+GG +VKI ++ G G+ V+++ESHN TV  IC  R+ K
Sbjct: 150 GMIATAGGNAVKIWDLIGGGRLVYSMESHNKTVTKICVGRIGK 192



 Score = 39.3 bits (90), Expect(2) = 2e-09
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = -1

Query: 344 VKKDGGEDSDEFWL*VCLLMDI*KFFIIQHLKLTPSTRFPALLLTVELSPDC 189
           + KD G++SD++ +    L    K F   ++K+T S R+PA LL+V  SPDC
Sbjct: 190 IGKDSGDESDQYRIMSVGLDGYFKVFDYGNMKVTYSMRYPAPLLSVGYSPDC 241


>ref|XP_002321043.1| predicted protein [Populus trichocarpa] gi|222861816|gb|EEE99358.1|
           predicted protein [Populus trichocarpa]
          Length = 534

 Score = 49.7 bits (117), Expect(2) = 3e-09
 Identities = 23/43 (53%), Positives = 33/43 (76%)
 Frame = -2

Query: 463 GLIATSGGISVKIRNVSGDGKAVHTLESHNMTVKSICFVRLRK 335
           G++AT+GG SVKI ++ G GK V+++ESHN TV SIC  ++ K
Sbjct: 235 GMVATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSICVGKVGK 277



 Score = 36.6 bits (83), Expect(2) = 3e-09
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = -1

Query: 344 VKKDGGEDSDEFWL*VCLLMDI*KFFIIQHLKLTPSTRFPALLLTVELSPDCL 186
           V K+ GE++ ++ +    L    K F    +K+T S RFPA L+++  SPDC+
Sbjct: 275 VGKESGEEALQYRIFSVALDGYMKVFDYAKMKVTHSMRFPAPLMSIGFSPDCM 327