BLASTX nr result

ID: Cimicifuga21_contig00027552 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00027552
         (369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529003.1| separase, putative [Ricinus communis] gi|223...   105   4e-21
ref|XP_002273874.2| PREDICTED: uncharacterized protein LOC100259...    96   3e-18
emb|CBI23880.3| unnamed protein product [Vitis vinifera]               96   3e-18
ref|XP_002303175.1| predicted protein [Populus trichocarpa] gi|2...    94   1e-17
ref|XP_003633590.1| PREDICTED: uncharacterized protein LOC100260...    91   1e-16

>ref|XP_002529003.1| separase, putative [Ricinus communis] gi|223531543|gb|EEF33373.1|
            separase, putative [Ricinus communis]
          Length = 2153

 Score =  105 bits (262), Expect = 4e-21
 Identities = 61/125 (48%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
 Frame = -2

Query: 365  PSRFSSMAWMLLSRLNSDNEPIIMLLPSDAIPEDMDDDVKYST----FYEGNKSNKKWIC 198
            PSR    AWMLLSRLNS + PI+MLLP D I E+  DD   +     F E N  +K W C
Sbjct: 1625 PSRVC--AWMLLSRLNSKSHPIMMLLPVDLISEETSDDDAPNPGSEEFPESNDLDKHWHC 1682

Query: 197  PWGYTVVDEVAPEFKLILEENYLSSSVSSPVXXXXXXXXXXXXXXXXXXXLSKFLRTAEE 18
            PWG+TV+DEV+P FKLILEENYLSSS+                       L K LR  E+
Sbjct: 1683 PWGFTVIDEVSPAFKLILEENYLSSSIFPLEDTKENRTLWWMRRKKLDFQLGKLLRKMED 1742

Query: 17   SWLGP 3
             WLGP
Sbjct: 1743 LWLGP 1747


>ref|XP_002273874.2| PREDICTED: uncharacterized protein LOC100259948 [Vitis vinifera]
          Length = 2197

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 52/117 (44%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
 Frame = -2

Query: 344  AWMLLSRLNSDNEPIIMLLPSDAIPEDMDDDVKYST---FYEGNKSNKKWICPWGYTVVD 174
            AW+LLSRLN  ++P+++LLP D++ E++ DD   S     YE    +K+W CPWG TVVD
Sbjct: 1674 AWVLLSRLNMKSQPVVILLPVDSVLEEVSDDDASSESGIHYEHKDLDKQWHCPWGSTVVD 1733

Query: 173  EVAPEFKLILEENYLSSSVSSPVXXXXXXXXXXXXXXXXXXXLSKFLRTAEESWLGP 3
            +V P FK ILEENYLSSS                        L K LR  E+ WLGP
Sbjct: 1734 DVTPAFKTILEENYLSSSTFPLDDTKENRLQWWTQRKKLDHRLGKLLRDLEDLWLGP 1790


>emb|CBI23880.3| unnamed protein product [Vitis vinifera]
          Length = 2158

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 52/117 (44%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
 Frame = -2

Query: 344  AWMLLSRLNSDNEPIIMLLPSDAIPEDMDDDVKYST---FYEGNKSNKKWICPWGYTVVD 174
            AW+LLSRLN  ++P+++LLP D++ E++ DD   S     YE    +K+W CPWG TVVD
Sbjct: 1621 AWVLLSRLNMKSQPVVILLPVDSVLEEVSDDDASSESGIHYEHKDLDKQWHCPWGSTVVD 1680

Query: 173  EVAPEFKLILEENYLSSSVSSPVXXXXXXXXXXXXXXXXXXXLSKFLRTAEESWLGP 3
            +V P FK ILEENYLSSS                        L K LR  E+ WLGP
Sbjct: 1681 DVTPAFKTILEENYLSSSTFPLDDTKENRLQWWTQRKKLDHRLGKLLRDLEDLWLGP 1737


>ref|XP_002303175.1| predicted protein [Populus trichocarpa] gi|222840607|gb|EEE78154.1|
           predicted protein [Populus trichocarpa]
          Length = 713

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 55/118 (46%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
 Frame = -2

Query: 344 AWMLLSRLNSDNEPIIMLLPSDAIPEDM-DDDVKYST---FYEGNKSNKKWICPWGYTVV 177
           AWMLLSRL   ++PI+MLLP + + E+  DDD   S    F   N  +K W CPWG TVV
Sbjct: 188 AWMLLSRLKFKSQPIMMLLPVNKVLEETSDDDCAMSCTGEFLVSNNLDKHWHCPWGSTVV 247

Query: 176 DEVAPEFKLILEENYLSSSVSSPVXXXXXXXXXXXXXXXXXXXLSKFLRTAEESWLGP 3
           D+VAP F+ ILEENYLSSS                        L K LR  E+SWLGP
Sbjct: 248 DDVAPTFRFILEENYLSSSKFPLEDTKENRNLWWTKRKELDHRLGKLLRKIEDSWLGP 305


>ref|XP_003633590.1| PREDICTED: uncharacterized protein LOC100260134 [Vitis vinifera]
          Length = 318

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 43/78 (55%), Positives = 57/78 (73%), Gaps = 3/78 (3%)
 Frame = -2

Query: 344 AWMLLSRLNSDNEPIIMLLPSDAIPEDMDDDVKYST---FYEGNKSNKKWICPWGYTVVD 174
           AW+LLS LN  ++P+++LLP D++ E++ DD   S     YE    +K+W CPWG TVVD
Sbjct: 73  AWVLLSHLNMKSQPVVILLPVDSVLEEVSDDDASSESGIHYEHKDLDKQWHCPWGSTVVD 132

Query: 173 EVAPEFKLILEENYLSSS 120
           +VAP FK+ILEENYLSSS
Sbjct: 133 DVAPAFKMILEENYLSSS 150


Top