BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00026923
         (751 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002865418.1| SNF2 domain-containing protein [Arabidopsis ...    61   3e-07
ref|NP_199166.1| Helicase protein with RING/U-box domain [Arabid...    58   2e-06

>ref|XP_002865418.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
           gi|297311253|gb|EFH41677.1| SNF2 domain-containing
           protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1305

 Score = 60.8 bits (146), Expect = 3e-07
 Identities = 65/249 (26%), Positives = 104/249 (41%), Gaps = 25/249 (10%)
 Frame = +2

Query: 77  VESDLGFEARGMVEEEPAGLEQCEPALPE--KEGEQFKGLKVESGLGLEKEGTVKKEP-- 244
           VE +L  E    V+EE   ++    ++ E    G   K + V+          VK+EP  
Sbjct: 214 VEPELCVETLVSVKEEDMSVDSIMESVVETVSRGSDNKCVDVK----------VKEEPDL 263

Query: 245 -VSLEKCQPVLPRKKSESFEALKVDSDLGSEKKSLVMEEPM-----------DIDQHQAM 388
              LE+   VL +K     E +KV  D  SE   L+ E              D D   A 
Sbjct: 264 DTKLEEDSVVLEKKD----EVIKVQEDQPSEINGLLQENKKVDQEIVLFSSGDSDGASAK 319

Query: 389 KRRKDSYLSDGVTLESDLNLEKKGRV-KEEPVDVDQYQPKRQKKESESVSCDDLTGLGNN 565
           +R+ +   S  + ++S +      RV K E +D  +      +K    V  + +  +   
Sbjct: 320 RRKIEMESSVPIGVQSCILAPTPLRVVKPEKLDTPEVIDLESEKSYTHVKMEPVEEIKAE 379

Query: 566 YFS--------SYNHQSKPIYAKKQDTTKEKIPGLSEVEDGEFPDEPDWRLVGRGTVVGL 721
                       ++ + KP++ KK+    +K+    +VEDG+FP E DW LVGR  V   
Sbjct: 380 AVKMSSQVKEMKFSREQKPVFVKKEPVEAKKV----KVEDGDFPVEKDWYLVGRSLVTAT 435

Query: 722 STCRGKKLD 748
           ST +G+KL+
Sbjct: 436 STSKGRKLE 444


>ref|NP_199166.1| Helicase protein with RING/U-box domain [Arabidopsis thaliana]
           gi|60390960|sp|Q9FIY7.1|SM3L3_ARATH RecName:
           Full=Putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 3; Short=SMARCA3-like protein 3
           gi|10178192|dbj|BAB11616.1| DNA repair protein-like
           [Arabidopsis thaliana] gi|332007595|gb|AED94978.1|
           Helicase protein with RING/U-box domain [Arabidopsis
           thaliana]
          Length = 1277

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 60/205 (29%), Positives = 87/205 (42%), Gaps = 32/205 (15%)
 Frame = +2

Query: 230 VKKEP---VSLEKCQPVLPRKKSESFEALKVDSDLGSEKKSLVMEEPMDI-----DQHQA 385
           VK+EP     LE+   V P    +  E +KV  D  SE    + +E  D+         +
Sbjct: 231 VKEEPDLGTKLEE-DSVFPNVLEKKDEVIKVLEDQPSEINKKLEQENDDLFSSGDSDGTS 289

Query: 386 MKRRK---DSYLSDGVT----------------LES----DLNLEKK-GRVKEEPVDVDQ 493
            KRRK   +SY   GV                 L++    DL  EK    VK EPV+  +
Sbjct: 290 AKRRKMEMESYAPVGVESCILAPTPLRVVKPEKLDTPEVIDLESEKSYTHVKMEPVEEIK 349

Query: 494 YQPKRQKKESESVSCDDLTGLGNNYFSSYNHQSKPIYAKKQDTTKEKIPGLSEVEDGEFP 673
            +  +   + E V               ++ + K +Y KK+     K+    +VEDG+FP
Sbjct: 350 VEAVKMSSQVEDVK--------------FSREQKSVYVKKEPVGARKV----KVEDGDFP 391

Query: 674 DEPDWRLVGRGTVVGLSTCRGKKLD 748
            E DW LVGR  V   ST +G+KL+
Sbjct: 392 VEKDWYLVGRSLVTATSTSKGRKLE 416