BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00026518
         (284 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB84340.1| putative non-LTR retroelement reverse transcripta...    98   8e-19
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    95   5e-18
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    95   5e-18
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    95   5e-18
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta...    95   5e-18

>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1094

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 47/81 (58%), Positives = 60/81 (74%)
 Frame = -3

Query: 243 EHLNHTNLVLIPKCKSPKAPSDYRPISLCNVVYKIISKILSSRMKSIMNKIISPLQCAFV 64
           E  NHT+L LIPK   P   +D RPISLC+V+YKIISKILS+R+K  +  I+SP Q AFV
Sbjct: 211 EDWNHTHLCLIPKITKPARMADIRPISLCSVMYKIISKILSARLKKYLPVIVSPTQSAFV 270

Query: 63  NHMQISDNIVIAHEILHTIRT 1
               +SDNI++AHEI+H +RT
Sbjct: 271 AERLVSDNIILAHEIVHNLRT 291


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 43/81 (53%), Positives = 63/81 (77%)
 Frame = -3

Query: 246  LEHLNHTNLVLIPKCKSPKAPSDYRPISLCNVVYKIISKILSSRMKSIMNKIISPLQCAF 67
            L+ +N T+L LIPK K+P  PS YRPI+LCN  YKI++KI++SR++  M+++IS  Q AF
Sbjct: 1090 LQVMNRTHLALIPKVKAPTHPSHYRPIALCNFSYKILTKIIASRLQPFMSELISDNQSAF 1149

Query: 66   VNHMQISDNIVIAHEILHTIR 4
            V++ QI DN++IAHEI H ++
Sbjct: 1150 VSNRQIQDNVIIAHEIYHHLK 1170


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1524

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 41/78 (52%), Positives = 61/78 (78%)
 Frame = -3

Query: 237 LNHTNLVLIPKCKSPKAPSDYRPISLCNVVYKIISKILSSRMKSIMNKIISPLQCAFVNH 58
           +NHTN+ +IPK  +P   SDYRPI+LCNV+YK+ISK L +R+KS +N I+S  Q AF+  
Sbjct: 640 INHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPG 699

Query: 57  MQISDNIVIAHEILHTIR 4
             I+DN++IAHE++H+++
Sbjct: 700 RIINDNVMIAHEVMHSLK 717


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 41/78 (52%), Positives = 61/78 (78%)
 Frame = -3

Query: 237  LNHTNLVLIPKCKSPKAPSDYRPISLCNVVYKIISKILSSRMKSIMNKIISPLQCAFVNH 58
            +NHTN+ +IPK  +P   SDYRPI+LCNV+YK+ISK L +R+KS +N I+S  Q AF+  
Sbjct: 866  INHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPG 925

Query: 57   MQISDNIVIAHEILHTIR 4
              I+DN++IAHE++H+++
Sbjct: 926  RIINDNVMIAHEVMHSLK 943


>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1319

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 47/78 (60%), Positives = 60/78 (76%)
 Frame = -3

Query: 234 NHTNLVLIPKCKSPKAPSDYRPISLCNVVYKIISKILSSRMKSIMNKIISPLQCAFVNHM 55
           NHT+L LIPK  +P+  SD RPISLC+V+YKIISKILS ++K  +  I+SP Q AF    
Sbjct: 437 NHTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKILSFKLKKHLPSIVSPSQSAFFAER 496

Query: 54  QISDNIVIAHEILHTIRT 1
            ISDNI+IAHEI+H++RT
Sbjct: 497 LISDNILIAHEIVHSLRT 514