BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00026446
         (396 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    66   3e-09
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    65   6e-09
gb|AAC28197.1| contains similarity to reverse transcriptases [Ar...    65   6e-09
gb|ABA97563.1| retrotransposon protein, putative, unclassified [...    64   1e-08
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...    63   2e-08

>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
           gi|7267666|emb|CAB78094.1| RNA-directed DNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 35/111 (31%), Positives = 61/111 (54%)
 Frame = +3

Query: 6   FFNASTICRRKTNSITCLKNEANIWVHTRKEINQTVVSLFSNLLSPGVIDTLDLPPNLVS 185
           +F+A+T  RR  N+++ +++ +    H  ++I  T+ S F N+ +      L +    +S
Sbjct: 295 YFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNNSDLQVVQEALS 354

Query: 186 KVISSEDNTSLHCLPHTEEIKNAFFSIRSL*APGPDGFPSLYFTHSWNLVQ 338
            +ISS  N  L  +    EIK A FSI +  APGPDGF + +F   W++++
Sbjct: 355 PIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIE 405


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 45/128 (35%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
 Frame = +3

Query: 3   KFFNASTICRRKTNSITCLKNEANIWVHTRKEINQTVVSLFSNLLSPGVIDTLDLPPNLV 182
           KFF+A T  RR  N IT L +E  IW     +I    VS F NL +       D     V
Sbjct: 137 KFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYFQNLFTTANPQVFDEALGEV 196

Query: 183 SKVISSEDNTSLHCLPHTEEIKNAFFSIRSL*APGPDGFPSLYFTHSWNLVQLIILP*EN 362
             +I+   N  L       E++ A F I    APGPDG  +L+F  SW +++  +L   N
Sbjct: 197 QVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMTALFFQKSWAIIKSDLLSLVN 256

Query: 363 S--EDGVF 380
           S  ++GVF
Sbjct: 257 SFLQEGVF 264


>gb|AAC28197.1| contains similarity to reverse transcriptases [Arabidopsis
           thaliana] gi|7267156|emb|CAB77868.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 1077

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 37/110 (33%), Positives = 59/110 (53%)
 Frame = +3

Query: 6   FFNASTICRRKTNSITCLKNEANIWVHTRKEINQTVVSLFSNLLSPGVIDTLDLPPNLVS 185
           FF+A+T  RR  N+I+ ++N A   V+   EI +T+   F ++ +    D   +    +S
Sbjct: 330 FFHAATNSRRAINTISVIENSAGTSVYEDSEIIETISDYFQDIFTSQEGDRTSVVAEALS 389

Query: 186 KVISSEDNTSLHCLPHTEEIKNAFFSIRSL*APGPDGFPSLYFTHSWNLV 335
             I+++ N +L  LP   EIK A  SI    APG DGF + +F  +W+ V
Sbjct: 390 PCITTDMNNTLISLPTVAEIKQACLSIHPDKAPGRDGFSASFFQSNWSTV 439


>gb|ABA97563.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 839

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 34/102 (33%), Positives = 54/102 (52%)
 Frame = +3

Query: 30  RRKTNSITCLKNEANIWVHTRKEINQTVVSLFSNLLSPGVIDTLDLPPNLVSKVISSEDN 209
           RR+ N I  LKN+  +WV   +E    +   F  L S    +  D   ++V + ++ + N
Sbjct: 240 RRRRNKIGRLKNDEGVWVENEEEKRGMIAQYFKTLFSSNRGNNSDQLLDVVERKVTEDMN 299

Query: 210 TSLHCLPHTEEIKNAFFSIRSL*APGPDGFPSLYFTHSWNLV 335
             L     +EEIK A  SI  L APGPDG P++++ + W+L+
Sbjct: 300 ELLTSAYISEEIKEALDSIGDLKAPGPDGMPAVFYKNFWDLM 341


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 31/110 (28%), Positives = 58/110 (52%)
 Frame = +3

Query: 6   FFNASTICRRKTNSITCLKNEANIWVHTRKEINQTVVSLFSNLLSPGVIDTLDLPPNLVS 185
           +F+A T  RR  N +T +++   +  H   +I+Q +   F  + +        +    + 
Sbjct: 249 YFHAVTRNRRTQNRLTVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIE 308

Query: 186 KVISSEDNTSLHCLPHTEEIKNAFFSIRSL*APGPDGFPSLYFTHSWNLV 335
            ++S  DN  L  +P+ EE+K+A FSI +  APGPDGF + ++   W+++
Sbjct: 309 PMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHII 358