BLASTX nr result
ID: Cimicifuga21_contig00026415
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00026415
(296 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002314675.1| predicted protein [Populus trichocarpa] gi|2... 151 5e-35
ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containi... 144 6e-33
ref|XP_003610748.1| Pentatricopeptide repeat-containing protein ... 142 4e-32
ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containi... 138 5e-31
ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana] ... 124 8e-27
>ref|XP_002314675.1| predicted protein [Populus trichocarpa] gi|222863715|gb|EEF00846.1|
predicted protein [Populus trichocarpa]
Length = 845
Score = 151 bits (382), Expect = 5e-35
Identities = 71/98 (72%), Positives = 84/98 (85%)
Frame = +3
Query: 3 CRVFNLMSNKTTVSWNTILAGYIRNHDMESACRFFDSMPEKDLVSWNTMIGALVQESSFE 182
CRVF+ M NKT VSWN+++AG++RN DMESA + F +MP+ DLVSWNTMIGALVQES F+
Sbjct: 396 CRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFK 455
Query: 183 EAIELFRTMQNEGVKGDKVTMVSVASACGYLGAVDFAK 296
EAIELFR MQ+EG+ DKVTMV VASACGYLGA+D AK
Sbjct: 456 EAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAK 493
Score = 57.4 bits (137), Expect = 1e-06
Identities = 27/76 (35%), Positives = 45/76 (59%)
Frame = +3
Query: 48 NTILAGYIRNHDMESACRFFDSMPEKDLVSWNTMIGALVQESSFEEAIELFRTMQNEGVK 227
N+++ Y +++ R FD M E+++VSW ++IG + ++EA+ LF M G++
Sbjct: 178 NSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIR 237
Query: 228 GDKVTMVSVASACGYL 275
+ VTMV V SAC L
Sbjct: 238 PNSVTMVGVISACAKL 253
>ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 144 bits (364), Expect = 6e-33
Identities = 68/98 (69%), Positives = 81/98 (82%)
Frame = +3
Query: 3 CRVFNLMSNKTTVSWNTILAGYIRNHDMESACRFFDSMPEKDLVSWNTMIGALVQESSFE 182
C+VF M NKT V+WN+++AG +R+ DME A R FD M E+DLVSWNTMIGALVQ S FE
Sbjct: 387 CKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFE 446
Query: 183 EAIELFRTMQNEGVKGDKVTMVSVASACGYLGAVDFAK 296
EAIELFR MQN+G+ GD+VTMV +ASACGYLGA+D AK
Sbjct: 447 EAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAK 484
Score = 55.5 bits (132), Expect = 5e-06
Identities = 28/74 (37%), Positives = 41/74 (55%)
Frame = +3
Query: 66 YIRNHDMESACRFFDSMPEKDLVSWNTMIGALVQESSFEEAIELFRTMQNEGVKGDKVTM 245
+ R D SA F M ++D+ +W IG + E + E AIELF M + VK D V
Sbjct: 509 FSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVF 568
Query: 246 VSVASACGYLGAVD 287
V++ +AC + G+VD
Sbjct: 569 VALLTACSHGGSVD 582
>ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 828
Score = 142 bits (357), Expect = 4e-32
Identities = 64/98 (65%), Positives = 82/98 (83%)
Frame = +3
Query: 3 CRVFNLMSNKTTVSWNTILAGYIRNHDMESACRFFDSMPEKDLVSWNTMIGALVQESSFE 182
C+VF+ MSNKT V+WN+++AG +R+ ++E A R F MPE +LVSWNTMIGA+VQ S FE
Sbjct: 379 CKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFE 438
Query: 183 EAIELFRTMQNEGVKGDKVTMVSVASACGYLGAVDFAK 296
EAI+L R MQN+G+KGD+VTMV +ASACGYLGA+D AK
Sbjct: 439 EAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAK 476
Score = 55.5 bits (132), Expect = 5e-06
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Frame = +3
Query: 6 RVFNLMSN----KTTVSWNTILAGYIRNHDMESACRFFDSMPEKDLVSWNTMIGALVQES 173
+V NLM+ T+ N +L Y++ DM + FD +K+LV +NT++ VQ
Sbjct: 244 KVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHG 303
Query: 174 SFEEAIELFRTMQNEGVKGDKVTMVSVASACGYLGAVDFAK 296
E + + M +G + DKVTM+S +AC LG + K
Sbjct: 304 LAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGK 344
>ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 138 bits (347), Expect = 5e-31
Identities = 64/98 (65%), Positives = 80/98 (81%)
Frame = +3
Query: 3 CRVFNLMSNKTTVSWNTILAGYIRNHDMESACRFFDSMPEKDLVSWNTMIGALVQESSFE 182
CRVF+LMSNKT VSWN++ AG+IRN D+ESA F+ +PE++ V WNTMI LVQ+S FE
Sbjct: 388 CRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFE 447
Query: 183 EAIELFRTMQNEGVKGDKVTMVSVASACGYLGAVDFAK 296
+AIELFR MQ EG+K D+VTM+ +ASACGYLGA + AK
Sbjct: 448 DAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAK 485
Score = 54.7 bits (130), Expect = 8e-06
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 48 NTILAG-YIRNHDMESACRFFDSMPEKDLVSWNTMIGALVQESSFEEAIELFRTMQNEGV 224
NT L + R D +SA + F+ M E+D+ +W IG + E + E A LF M +GV
Sbjct: 503 NTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGV 562
Query: 225 KGDKVTMVSVASACGYLGAVD 287
K D V V V +AC + G V+
Sbjct: 563 KPDVVLFVQVLTACSHGGQVE 583
>ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein
[Arabidopsis thaliana]
Length = 938
Score = 124 bits (311), Expect = 8e-27
Identities = 59/98 (60%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Frame = +3
Query: 6 RVFNLMSNKTTVSWNTILAGYIRNHDMESACRFFDSMPEKDLVSWNTMIGALVQESSFEE 185
R+F+ MSNKT V+WN+I+AGY+ N ++++A F++MPEK++VSWNT+I LVQ S FEE
Sbjct: 393 RIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEE 452
Query: 186 AIELFRTMQN-EGVKGDKVTMVSVASACGYLGAVDFAK 296
AIE+F +MQ+ EGV D VTM+S+ASACG+LGA+D AK
Sbjct: 453 AIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAK 490
Score = 57.0 bits (136), Expect = 2e-06
Identities = 30/82 (36%), Positives = 44/82 (53%)
Frame = +3
Query: 51 TILAGYIRNHDMESACRFFDSMPEKDLVSWNTMIGALVQESSFEEAIELFRTMQNEGVKG 230
T++ + R D ESA F+S+ +D+ +W IGA+ + E AIELF M +G+K
Sbjct: 510 TLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKP 569
Query: 231 DKVTMVSVASACGYLGAVDFAK 296
D V V +AC + G V K
Sbjct: 570 DGVAFVGALTACSHGGLVQQGK 591